Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030974.1

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Forward (+)

13377 .. 14663

Gene Structure 1287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030974.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

atgggcagtggaacttcccgagatggccgtaaagatatatcgaaactgtatggaagactctatattcctcaaggtaccaattgtgagacattatggccaattgaagtgaaaaaatcagctcatggtggccgaatgtggttgcacaagggatggcaagagtttgccaacttttactcactagagcaaggatacttggtatttgtgagttataaaggcgagcattctcatttccaaggacgcattttccattggaatgatgtggaaatcgagtaccctattcgcggatcaggaggaactgatggcataccaaaaaggaaaagaacaagagctcatggaggcatgcctaatgcttatttaaaagcagctagagccatttcaaattcctccggatcctcgggtaatgaacaccagaatgttctttccacagctaacagtttcaaatctgacaagccattcattatgatcaaaatgacagcttattacttgcgtagagaaatgtttataagtgcatcttttgccacaaaacatctctgtcgagcaggcgcttcttgtgacttgtccctacagactccagatatgagaacttggattgctgaattgattgtgtatgaaaccactgagtcaagagtatttgcaaagattaaaggtgctggttggaaagcatttaaggaggaaaatcatctcgaagaaggtgatgtctgtgtgcttgagttgatagaggaatgtaaattcaaagtttcgatattccgagcaagagtgaagattaacgagttaagtgaagctggaaggccaagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

265

Amino Acids

30.07

Weight (kDa)

9.35

Isoelectric Point (pI)

32.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	210, 503
Acc65I	GGTACC	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	74
AccII	CGCG	1 cut(s)	282
AccIII	TCCGGA	1 cut(s)	386
AciI	CCGC	1 cut(s)	282
AclWI	GGATC	3 cut(s)	292, 384, 397
AcoI	YGGCCR	3 cut(s)	25, 95, 127
AcsI	RAATTY	2 cut(s)	379, 728
AfaI	GTAC	2 cut(s)	76, 272
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgsI	TTSAA	4 cut(s)	104, 378, 439, 733
AluBI	AGCT	6 cut(s)	119, 329, 365, 428, 476, 782
AluI	AGCT	6 cut(s)	119, 329, 365, 428, 476, 782
Alw21I	GWGCWC	1 cut(s)	331
Alw26I	GTCTC	1 cut(s)	80
AlwI	GGATC	3 cut(s)	292, 384, 397
Ama87I	CYCGRG	2 cut(s)	18, 394
Aor13HI	TCCGGA	1 cut(s)	386
AoxI	GGCC	4 cut(s)	25, 95, 127, 788
ApeKI	GCWGC	1 cut(s)	362
ApoI	RAATTY	2 cut(s)	379, 728
Asp718I	GGTACC	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	545
AsuHPI	GGTGA	1 cut(s)	704
AvaI	CYCGRG	2 cut(s)	18, 394
BalI	TGGCCA	1 cut(s)	97
BamHI	GGATCC	1 cut(s)	389
BanI	GGYRCC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	331
BbsI	GAAGAC	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	331
BbvI	GCAGC	1 cut(s)	374
BccI	CCATC	3 cut(s)	17, 144, 293
BceAI	ACGGC	1 cut(s)	12
BciVI	GTATCC	1 cut(s)	182
BclI	TGATCA	1 cut(s)	462
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	2 cut(s)	179, 366
BfmI	CTRYAG	1 cut(s)	563
BfoI	RGCGCY	1 cut(s)	546
BfuI	GTATCC	1 cut(s)	182
BisI	GCNGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	364
BmeT110I	CYCGRG	2 cut(s)	18, 394
BmiI	GGNNCC	2 cut(s)	76, 391
BmsI	GCATC	1 cut(s)	518
BpiI	GAAGAC	1 cut(s)	61
BpmI	CTGGAG	1 cut(s)	555
BpuEI	CTTGAG	2 cut(s)	54, 728
BsaJI	CCNNGG	2 cut(s)	232, 393
BsaWI	WCCGGW	1 cut(s)	386
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
BseAI	TCCGGA	1 cut(s)	386
BseDI	CCNNGG	2 cut(s)	232, 393
BseGI	GGATG	1 cut(s)	155
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMII	CTCAG	1 cut(s)	609
BseXI	GCAGC	1 cut(s)	374
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	4 cut(s)	27, 97, 129, 790
BshNI	GGYRCC	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	331
BsiHKCI	CYCGRG	2 cut(s)	18, 394
BsiSI	CCGG	1 cut(s)	387
BslFI	GGGAC	1 cut(s)	544
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	544
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	4 cut(s)	27, 97, 129, 790
BsoBI	CYCGRG	2 cut(s)	18, 394
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp13I	TCCGGA	1 cut(s)	386
Bsp143I	GATC	3 cut(s)	284, 389, 462
BspACI	CCGC	1 cut(s)	282
BspANI	GGCC	4 cut(s)	27, 97, 129, 790
BspCNI	CTCAG	1 cut(s)	610
BspEI	TCCGGA	1 cut(s)	386
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	2 cut(s)	76, 391
BspPI	GGATC	3 cut(s)	292, 384, 397
BspT107I	GGYRCC	1 cut(s)	74
BssECI	CCNNGG	2 cut(s)	232, 393
BssMI	GATC	3 cut(s)	284, 389, 462
BssT1I	CCWWGG	1 cut(s)	232
Bst4CI	ACNGT	2 cut(s)	48, 434
BstAPI	GCANNNNNTGC	1 cut(s)	515
BstC8I	GCNNGC	3 cut(s)	218, 341, 541
BstDEI	CTNAG	1 cut(s)	618
BstF5I	GGATG	1 cut(s)	155
BstFNI	CGCG	1 cut(s)	282
BstH2I	RGCGCY	1 cut(s)	546
BstHHI	GCGC	1 cut(s)	545
BstKTI	GATC	3 cut(s)	287, 392, 465
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	3 cut(s)	284, 389, 462
BstMWI	GCNNNNNNNGC	2 cut(s)	368, 515
BstNSI	RCATGY	1 cut(s)	343
BstSFI	CTRYAG	1 cut(s)	563
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	1 cut(s)	374
BstV2I	GAAGAC	1 cut(s)	61
BstX2I	RGATCY	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	389
BsuI	GTATCC	1 cut(s)	182
BsuRI	GGCC	4 cut(s)	27, 97, 129, 790
BtsCI	GGATG	1 cut(s)	155
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	2 cut(s)	13, 615
Cac8I	GCNNGC	3 cut(s)	218, 341, 541
CfoI	GCGC	1 cut(s)	545
CseI	GACGC	1 cut(s)	246
Csp6I	GTAC	2 cut(s)	75, 271
CviAII	CATG	3 cut(s)	122, 332, 340
CviQI	GTAC	2 cut(s)	75, 271
DdeI	CTNAG	1 cut(s)	618
DpnI	GATC	3 cut(s)	286, 391, 464
DpnII	GATC	3 cut(s)	284, 389, 462
DraI	TTTAAA	1 cut(s)	357
EaeI	YGGCCR	3 cut(s)	25, 95, 127
Ecl136II	GAGCTC	1 cut(s)	329
Eco130I	CCWWGG	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	331
Eco53kI	GAGCTC	1 cut(s)	329
Eco88I	CYCGRG	2 cut(s)	18, 394
EcoICRI	GAGCTC	1 cut(s)	329
EcoT14I	CCWWGG	1 cut(s)	232
EcoT38I	GRGCYC	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	232
FaeI	CATG	3 cut(s)	125, 335, 343
FalI	AAGNNNNNCTT	2 cut(s)	496, 528
FaqI	GGGAC	1 cut(s)	544
FatI	CATG	3 cut(s)	121, 331, 339
FbaI	TGATCA	1 cut(s)	462
Fnu4HI	GCNGC	1 cut(s)	363
FokI	GGATG	1 cut(s)	162
FriOI	GRGCYC	1 cut(s)	331
Fsp4HI	GCNGC	1 cut(s)	363
FspBI	CTAG	2 cut(s)	179, 366
GlaI	GCGC	1 cut(s)	544
GluI	GCNGC	1 cut(s)	363
GsuI	CTGGAG	1 cut(s)	555
HaeII	RGCGCY	1 cut(s)	546
HaeIII	GGCC	4 cut(s)	27, 97, 129, 790
HapII	CCGG	1 cut(s)	387
HgaI	GACGC	1 cut(s)	246
HhaI	GCGC	1 cut(s)	545
Hin1II	CATG	3 cut(s)	125, 335, 343
Hin6I	GCGC	1 cut(s)	543
HinP1I	GCGC	1 cut(s)	543
HinfI	GANTC	3 cut(s)	57, 568, 620
HpaII	CCGG	1 cut(s)	387
HphI	GGTGA	1 cut(s)	704
Hpy188I	TCNGA	2 cut(s)	445, 749
Hpy188III	TCNNGA	6 cut(s)	18, 288, 387, 572, 624, 683
HpyAV	CCTTC	2 cut(s)	683, 780
HpyCH4III	ACNGT	2 cut(s)	48, 434
HpyCH4V	TGCA	3 cut(s)	142, 509, 635
HpyF10VI	GCNNNNNNNGC	2 cut(s)	368, 515
HpyF3I	CTNAG	1 cut(s)	618
Hsp92II	CATG	3 cut(s)	125, 335, 343
HspAI	GCGC	1 cut(s)	543
Kpn2I	TCCGGA	1 cut(s)	386
KpnI	GGTACC	1 cut(s)	78
Ksp22I	TGATCA	1 cut(s)	462
Kzo9I	GATC	3 cut(s)	284, 389, 462
LpnPI	CCDG	7 cut(s)	273, 400, 422, 525, 585, 636, 768
Lsp1109I	GCAGC	1 cut(s)	374
LweI	GCATC	1 cut(s)	518
MaeI	CTAG	2 cut(s)	179, 366
MaeIII	GTNAC	1 cut(s)	551
MalI	GATC	3 cut(s)	286, 391, 464
MboI	GATC	3 cut(s)	284, 389, 462
MboII	GAAGA	3 cut(s)	66, 698, 772
MfeI	CAATTG	2 cut(s)	79, 99
MflI	RGATCY	1 cut(s)	389
MhlI	GDGCHC	1 cut(s)	331
MlsI	TGGCCA	1 cut(s)	97
MluCI	AATT	5 cut(s)	79, 99, 379, 596, 728
MluNI	TGGCCA	1 cut(s)	97
MlyI	GAGTC	3 cut(s)	51, 562, 629
MmeI	TCCRAC	1 cut(s)	635
MnlI	CCTC	7 cut(s)	78, 284, 329, 394, 403, 664, 712
Mox20I	TGGCCA	1 cut(s)	97
MroI	TCCGGA	1 cut(s)	386
MscI	TGGCCA	1 cut(s)	97
MseI	TTAA	5 cut(s)	356, 642, 666, 765, 773
MslI	CAYNNNNRTG	2 cut(s)	252, 411
Msp20I	TGGCCA	1 cut(s)	97
MspI	CCGG	1 cut(s)	387
MunI	CAATTG	2 cut(s)	79, 99
Mva1269I	GAATGC	1 cut(s)	220
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	2 cut(s)	368, 515
NdeII	GATC	3 cut(s)	284, 389, 462
NlaIII	CATG	3 cut(s)	125, 335, 343
NlaIV	GGNNCC	2 cut(s)	76, 391
NmuCI	GTSAC	1 cut(s)	551
NspI	RCATGY	1 cut(s)	343
PaeI	GCATGC	1 cut(s)	343
PctI	GAATGC	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	364
PleI	GAGTC	3 cut(s)	51, 562, 628
PpsI	GAGTC	3 cut(s)	51, 562, 628
PsiI	TTATAA	2 cut(s)	210, 503
Psp124BI	GAGCTC	1 cut(s)	331
PspN4I	GGNNCC	2 cut(s)	76, 391
PsuI	RGATCY	1 cut(s)	389
RsaI	GTAC	2 cut(s)	76, 272
RsaNI	GTAC	2 cut(s)	75, 271
RseI	CAYNNNNRTG	2 cut(s)	252, 411
SacI	GAGCTC	1 cut(s)	331
SaqAI	TTAA	5 cut(s)	356, 642, 666, 765, 773
SatI	GCNGC	1 cut(s)	363
Sau3AI	GATC	3 cut(s)	284, 389, 462
SchI	GAGTC	3 cut(s)	51, 562, 629
SduI	GDGCHC	1 cut(s)	331
SetI	ASST	9 cut(s)	76, 121, 331, 367, 430, 478, 649, 694, 784
SfaNI	GCATC	1 cut(s)	518
SfcI	CTRYAG	1 cut(s)	563
SmiMI	CAYNNNNRTG	2 cut(s)	252, 411
SmlI	CTYRAG	2 cut(s)	69, 707
SmoI	CTYRAG	2 cut(s)	69, 707
SphI	GCATGC	1 cut(s)	343
Sse9I	AATT	5 cut(s)	79, 99, 379, 596, 728
SsiI	CCGC	1 cut(s)	282
SspMI	CTAG	2 cut(s)	179, 366
SstI	GAGCTC	1 cut(s)	331
StyI	CCWWGG	1 cut(s)	232
TaaI	ACNGT	2 cut(s)	48, 434
TaqI	TCGA	5 cut(s)	41, 267, 535, 684, 740
TasI	AATT	5 cut(s)	79, 99, 379, 596, 728
Tru1I	TTAA	5 cut(s)	356, 642, 666, 765, 773
Tru9I	TTAA	5 cut(s)	356, 642, 666, 765, 773
TscAI	CASTG	2 cut(s)	13, 622
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	3 cut(s)	417, 445, 624
TspRI	CASTG	2 cut(s)	13, 622
XapI	RAATTY	2 cut(s)	379, 728
XceI	RCATGY	1 cut(s)	343
XspI	CTAG	2 cut(s)	179, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.