Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000110.1

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Forward (+)

7568 .. 9138

Gene Structure 1571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000110.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atgggggagaggaaccgaaatggaaaacgaccagccgtttgtgaggagtctcaggggttctgcttgaggattcagagtcgtgaggatctcaaagatgggaagaaggaacttccgccggcagctgtgaggaagtatggagatcaaatggcagaccatatattcctgaagaaaagggatgggaagagtttgctagcttttatttactggaccaaggcgacttggcaaccttcagctctgaagatgaacatgcccatttccaaatacgaagctgaagctgaagctgaagctgaagctgaagctgaagctgaagctagagccatttcaatttcccccagatcctctgctgatgaacaccaatatgatatttccaaagtgagcagtttcagatctgacaagccatgtcttaatgtccaaatcacagctacatccttaaccaatcgtgtgttcataaatccagaatttgcgttggaacatttctgtaaagaaggctcttgttgtgacttgtcgttacagaatactctaggtgacaggatttggacggttcagtgcatttcttacacaataagtgatggaagaatgcgaacagtaatatcaggagctggttggaaatcctttaggcaggacaatcatctagaagagggtgacgtcctagtgttggagttgatagaggaacgtaggtgcagagtttcgataatccgggctcaaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

236

Amino Acids

26.75

Weight (kDa)

6.9

Isoelectric Point (pI)

43.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	648
AciI	CCGC	1 cut(s)	113
AclWI	GGATC	2 cut(s)	93, 330
AcsI	RAATTY	1 cut(s)	458
AcyI	GRCGYC	1 cut(s)	645
AfiI	CCNNNNNNNGG	1 cut(s)	655
AgsI	TTSAA	1 cut(s)	324
AjuI	GAANNNNNNNTTGG	2 cut(s)	428, 460
Alw26I	GTCTC	1 cut(s)	54
AlwI	GGATC	2 cut(s)	93, 330
AlwNI	CAGNNNCTG	1 cut(s)	599
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	1 cut(s)	458
ArsI	GACNNNNNNTTYG	2 cut(s)	21, 53
AspS9I	GGNCC	1 cut(s)	207
AsuC2I	CCSGG	1 cut(s)	698
AsuHPI	GGTGA	2 cut(s)	536, 653
AsuNHI	GCTAGC	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	703
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	3 cut(s)	89, 170, 563
BceAI	ACGGC	1 cut(s)	20
BcnI	CCSGG	1 cut(s)	698
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	5 cut(s)	191, 312, 521, 632, 650
BglII	AGATCT	1 cut(s)	386
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	698
Bme18I	GGWCC	1 cut(s)	207
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	1 cut(s)	14
BmrFI	CCNGG	1 cut(s)	698
BmtI	GCTAGC	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	85
BpuMI	CCSGG	1 cut(s)	698
BsaHI	GRCGYC	1 cut(s)	645
BsaJI	CCNNGG	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	1 cut(s)	655
Bse118I	RCCGGY	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	2 cut(s)	181, 425
BseLI	CCNNNNNNNGG	1 cut(s)	655
BseMII	CTCAG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	131
BsgI	GTGCAG	1 cut(s)	700
BsiSI	CCGG	2 cut(s)	116, 697
BslI	CCNNNNNNNGG	1 cut(s)	655
BsmAI	GTCTC	1 cut(s)	54
BsmI	GAATGC	1 cut(s)	582
Bsp1286I	GDGCHC	1 cut(s)	703
Bsp143I	GATC	4 cut(s)	85, 139, 335, 386
BspACI	CCGC	1 cut(s)	113
BspCNI	CTCAG	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	14
BspOI	GCTAGC	1 cut(s)	194
BspPI	GGATC	2 cut(s)	93, 330
BsrFI	RCCGGY	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	4 cut(s)	85, 139, 335, 386
BssNI	GRCGYC	1 cut(s)	645
BssT1I	CCWWGG	1 cut(s)	210
Bst4CI	ACNGT	2 cut(s)	541, 586
Bst6I	CTCTTC	2 cut(s)	176, 630
BstACI	GRCGYC	1 cut(s)	645
BstC8I	GCNNGC	2 cut(s)	117, 192
BstDEI	CTNAG	1 cut(s)	51
BstF5I	GGATG	2 cut(s)	181, 425
BstKTI	GATC	4 cut(s)	88, 142, 338, 389
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	4 cut(s)	85, 139, 335, 386
BstNSI	RCATGY	1 cut(s)	250
BstSCI	CCNGG	1 cut(s)	696
BstV1I	GCAGC	1 cut(s)	131
BstX2I	RGATCY	3 cut(s)	85, 335, 386
BstYI	RGATCY	3 cut(s)	85, 335, 386
BtsCI	GGATG	2 cut(s)	181, 425
BtsIMutI	CAGTG	1 cut(s)	551
Cac8I	GCNNGC	2 cut(s)	117, 192
CaiI	CAGNNNCTG	1 cut(s)	599
Cfr10I	RCCGGY	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	207
CviAII	CATG	2 cut(s)	247, 399
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	4 cut(s)	87, 141, 337, 388
DpnII	GATC	4 cut(s)	85, 139, 335, 386
Eam1104I	CTCTTC	2 cut(s)	176, 630
EarI	CTCTTC	2 cut(s)	176, 630
EciI	GGCGGA	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	703
Eco47I	GGWCC	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	703
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	2 cut(s)	250, 402
FaiI	YATR	7 cut(s)	135, 156, 158, 248, 360, 400, 449
FatI	CATG	2 cut(s)	246, 398
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	2 cut(s)	188, 412
FriOI	GRGCYC	1 cut(s)	703
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	5 cut(s)	191, 312, 521, 632, 650
GluI	GCNGC	1 cut(s)	120
HapII	CCGG	2 cut(s)	116, 697
Hin1I	GRCGYC	1 cut(s)	645
Hin1II	CATG	2 cut(s)	250, 402
HinfI	GANTC	3 cut(s)	47, 70, 76
HpaII	CCGG	2 cut(s)	116, 697
HphI	GGTGA	2 cut(s)	536, 653
Hpy188I	TCNGA	4 cut(s)	75, 237, 386, 391
Hpy188III	TCNNGA	5 cut(s)	80, 163, 455, 594, 632
HpyAV	CCTTC	3 cut(s)	97, 237, 479
HpyCH4III	ACNGT	2 cut(s)	541, 586
HpyCH4IV	ACGT	2 cut(s)	645, 673
HpyCH4V	TGCA	2 cut(s)	549, 681
HpyF3I	CTNAG	1 cut(s)	51
HpySE526I	ACGT	2 cut(s)	645, 673
Hsp92I	GRCGYC	1 cut(s)	645
Hsp92II	CATG	2 cut(s)	250, 402
KroI	GCCGGC	1 cut(s)	115
KroNI	GCCGGC	1 cut(s)	117
Kzo9I	GATC	4 cut(s)	85, 139, 335, 386
LmnI	GCTCC	1 cut(s)	596
Lsp1109I	GCAGC	1 cut(s)	131
MaeI	CTAG	5 cut(s)	191, 312, 521, 632, 650
MaeII	ACGT	2 cut(s)	645, 673
MaeIII	GTNAC	4 cut(s)	497, 507, 524, 641
MalI	GATC	4 cut(s)	87, 141, 337, 388
MboI	GATC	4 cut(s)	85, 139, 335, 386
MboII	GAAGA	6 cut(s)	112, 178, 193, 250, 585, 647
MflI	RGATCY	3 cut(s)	85, 335, 386
MhlI	GDGCHC	1 cut(s)	703
MluCI	AATT	2 cut(s)	324, 458
MlyI	GAGTC	2 cut(s)	56, 85
MmeI	TCCRAC	3 cut(s)	447, 584, 636
MnlI	CCTC	8 cut(s)	3, 37, 60, 76, 120, 349, 631, 661
MroNI	GCCGGC	1 cut(s)	115
MseI	TTAA	2 cut(s)	405, 431
MslI	CAYNNNNRTG	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	2 cut(s)	116, 697
MspR9I	CCNGG	1 cut(s)	698
Mva1269I	GAATGC	1 cut(s)	582
NaeI	GCCGGC	1 cut(s)	117
NciI	CCSGG	1 cut(s)	698
NdeII	GATC	4 cut(s)	85, 139, 335, 386
NgoMIV	GCCGGC	1 cut(s)	115
NheI	GCTAGC	1 cut(s)	190
NlaIII	CATG	2 cut(s)	250, 402
NlaIV	GGNNCC	1 cut(s)	14
NmuCI	GTSAC	3 cut(s)	497, 524, 641
NspI	RCATGY	1 cut(s)	250
PctI	GAATGC	1 cut(s)	582
PdiI	GCCGGC	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	2 cut(s)	55, 84
PpsI	GAGTC	2 cut(s)	55, 84
PspN4I	GGNNCC	1 cut(s)	14
PspPI	GGNCC	1 cut(s)	207
PstNI	CAGNNNCTG	1 cut(s)	599
PsuI	RGATCY	3 cut(s)	85, 335, 386
PvuII	CAGCTG	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	2 cut(s)	405, 431
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	4 cut(s)	85, 139, 335, 386
Sau96I	GGNCC	1 cut(s)	207
SchI	GAGTC	2 cut(s)	56, 85
ScrFI	CCNGG	1 cut(s)	698
SduI	GDGCHC	1 cut(s)	703
SinI	GGWCC	1 cut(s)	207
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
Sse9I	AATT	2 cut(s)	324, 458
SsiI	CCGC	1 cut(s)	113
SspMI	CTAG	5 cut(s)	191, 312, 521, 632, 650
StyD4I	CCNGG	1 cut(s)	696
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	2 cut(s)	541, 586
TaiI	ACGT	2 cut(s)	648, 676
TaqI	TCGA	1 cut(s)	689
TasI	AATT	2 cut(s)	324, 458
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	2 cut(s)	405, 431
Tru9I	TTAA	2 cut(s)	405, 431
TscAI	CASTG	1 cut(s)	551
TseFI	GTSAC	3 cut(s)	497, 524, 641
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	3 cut(s)	497, 524, 641
TspDTI	ATGAA	3 cut(s)	257, 363, 436
TspRI	CASTG	1 cut(s)	551
VpaK11BI	GGWCC	1 cut(s)	207
XapI	RAATTY	1 cut(s)	458
XbaI	TCTAGA	1 cut(s)	631
XceI	RCATGY	1 cut(s)	250
XspI	CTAG	5 cut(s)	191, 312, 521, 632, 650
ZraI	GACGTC	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.