Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034215.1

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Reverse (-)

14591 .. 15911

Gene Structure 1321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034215.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

atgcctcctgctcatttagaaactagagccgcttcaatttcctccggatcctcagctgatgaacaccaaaacgatcttactgcaactgccagtttcaaatctaacaagccattttttatgcttaacatctgtgcttcatacatacaactcggtttcgcgcacataaatcgatcttttgccaaggaacatctctgtagaccaggcacttcttgcgatgtgaccctgcagatttcaggtgagagagtttggactgctgtgtgcactgccaccgaacatagagatcagaaaatatatactagattttcaggtgctggatggaaagcatttcagcaggacaatcatctggtaaaaggtaatatctgtgtgttcgagctgatagaggagcgtacattcaaagtttccatattccgaactaaagtgaagattaataggcaagctgaggaaaaggatatggaaatagattaccctattcatggaggaggaattgatgtaacaccaaaagggaaaaagccaggagctaatcaagatgtgcctcctgcccacttagaagctagagccaattcagtttcttctggatcctcagctgatgaagaccaaaataatcttctcacaactactagtttcaaatctgacaagccaatttttatgctcaatatgacagctgcatacatgcgcctctctcttgcgcacataagtgcatcatttgctgctgaacatctatgcaaaccaggcatttcttgcaatgtgatcctacagaattcagaggagagagtttggactgctcagtgttttgtcagtgaacacagcgatcaccgagtgcaagcaagtctctcagggcctggttggaaagcatttaagcaggacaatcatctggtattaggtgatgtttgtgtttttgagttgatagatgaacgtaaactaaaagtttccatattccaaggtaaagtgaagattattaggcaaaatgaggaaaatgaagccaggcacatttctcagtttgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

334

Amino Acids

37.23

Weight (kDa)

6.92

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	687
AccI	GTMKAC	1 cut(s)	196
AccII	CGCG	1 cut(s)	158
AccIII	TCCGGA	1 cut(s)	44
AciI	CCGC	1 cut(s)	30
AclWI	GGATC	5 cut(s)	42, 55, 570, 583, 742
AcsI	RAATTY	1 cut(s)	757
AdeI	CACNNNGTG	1 cut(s)	817
AfaI	GTAC	1 cut(s)	388
AfiI	CCNNNNNNNGG	1 cut(s)	473
AgsI	TTSAA	4 cut(s)	36, 97, 394, 625
AhlI	ACTAGT	1 cut(s)	617
AjnI	CCWGG	5 cut(s)	199, 511, 727, 838, 980
AjuI	GAANNNNNNNTTGG	2 cut(s)	588, 620
AleI	CACNNNNGTG	1 cut(s)	693
AluBI	AGCT	7 cut(s)	56, 373, 437, 518, 551, 584, 662
AluI	AGCT	7 cut(s)	56, 373, 437, 518, 551, 584, 662
Alw21I	GWGCWC	1 cut(s)	263
Alw26I	GTCTC	1 cut(s)	833
Alw44I	GTGCAC	1 cut(s)	259
AlwI	GGATC	5 cut(s)	42, 55, 570, 583, 742
AlwNI	CAGNNNCTG	2 cut(s)	311, 839
Aor13HI	TCCGGA	1 cut(s)	44
AoxI	GGCC	1 cut(s)	836
ApaLI	GTGCAC	1 cut(s)	259
ApeKI	GCWGC	2 cut(s)	662, 707
ApoI	RAATTY	1 cut(s)	757
AseI	ATTAAT	1 cut(s)	426
AspLEI	GCGC	3 cut(s)	160, 675, 688
AspS9I	GGNCC	1 cut(s)	836
AsuHPI	GGTGA	3 cut(s)	248, 803, 893
BaeGI	GKGCMC	1 cut(s)	263
BamHI	GGATCC	2 cut(s)	47, 575
BbsI	GAAGAC	1 cut(s)	597
Bbv12I	GWGCWC	1 cut(s)	263
BbvCI	CCTCAGC	3 cut(s)	52, 438, 580
BbvI	GCAGC	2 cut(s)	649, 694
BccI	CCATC	1 cut(s)	309
BcgI	CGANNNNNNTGC	4 cut(s)	62, 96, 149, 183
BciT130I	CCWGG	5 cut(s)	201, 513, 729, 840, 982
BcoDI	GTCTC	1 cut(s)	833
BcuI	ACTAGT	1 cut(s)	617
BfaI	CTAG	4 cut(s)	24, 297, 552, 618
BfmI	CTRYAG	3 cut(s)	193, 224, 752
BisI	GCNGC	3 cut(s)	30, 663, 708
BlsI	GCNGC	3 cut(s)	31, 664, 709
Bme1390I	CCNGG	5 cut(s)	201, 513, 729, 840, 982
BmgT120I	GGNCC	1 cut(s)	836
BmiI	GGNNCC	2 cut(s)	49, 577
BmrFI	CCNGG	5 cut(s)	201, 513, 729, 840, 982
BmsI	GCATC	1 cut(s)	707
BpiI	GAAGAC	1 cut(s)	597
Bpu10I	CCTNAGC	3 cut(s)	52, 438, 580
Bsa29I	ATCGAT	1 cut(s)	169
BsaJI	CCNNGG	2 cut(s)	180, 937
BsaWI	WCCGGW	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	1 cut(s)	473
Bse1I	ACTGG	1 cut(s)	90
Bse3DI	GCAATG	1 cut(s)	748
BseAI	TCCGGA	1 cut(s)	44
BseBI	CCWGG	5 cut(s)	201, 513, 729, 840, 982
BseCI	ATCGAT	1 cut(s)	169
BseDI	CCNNGG	2 cut(s)	180, 937
BseGI	GGATG	1 cut(s)	320
BseLI	CCNNNNNNNGG	1 cut(s)	473
BseMI	GCAATG	1 cut(s)	748
BseMII	CTCAG	5 cut(s)	66, 429, 594, 797, 846
BseNI	ACTGG	1 cut(s)	90
BseRI	GAGGAG	3 cut(s)	395, 492, 779
BseSI	GKGCMC	1 cut(s)	263
BseXI	GCAGC	2 cut(s)	649, 694
Bsh1236I	CGCG	1 cut(s)	158
BshFI	GGCC	1 cut(s)	838
BshVI	ATCGAT	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	473
BsmAI	GTCTC	1 cut(s)	833
BsnI	GGCC	1 cut(s)	838
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp13I	TCCGGA	1 cut(s)	44
Bsp143I	GATC	7 cut(s)	47, 73, 170, 280, 575, 747, 808
BspACI	CCGC	1 cut(s)	30
BspANI	GGCC	1 cut(s)	838
BspCNI	CTCAG	5 cut(s)	65, 430, 593, 796, 845
BspDI	ATCGAT	1 cut(s)	169
BspEI	TCCGGA	1 cut(s)	44
BspFNI	CGCG	1 cut(s)	158
BspLI	GGNNCC	2 cut(s)	49, 577
BspMAI	CTGCAG	1 cut(s)	228
BspPI	GGATC	5 cut(s)	42, 55, 570, 583, 742
BsrDI	GCAATG	1 cut(s)	748
BsrI	ACTGG	1 cut(s)	90
BssECI	CCNNGG	2 cut(s)	180, 937
BssMI	GATC	7 cut(s)	47, 73, 170, 280, 575, 747, 808
BssT1I	CCWWGG	2 cut(s)	180, 937
Bst2UI	CCWGG	5 cut(s)	201, 513, 729, 840, 982
BstAPI	GCANNNNNTGC	3 cut(s)	210, 704, 738
BstC8I	GCNNGC	2 cut(s)	435, 822
BstDEI	CTNAG	7 cut(s)	52, 438, 544, 580, 783, 832, 993
BstF5I	GGATG	1 cut(s)	320
BstFNI	CGCG	1 cut(s)	158
BstHHI	GCGC	3 cut(s)	160, 675, 688
BstKTI	GATC	7 cut(s)	50, 76, 173, 283, 578, 750, 811
BstMAI	GTCTC	1 cut(s)	833
BstMBI	GATC	7 cut(s)	47, 73, 170, 280, 575, 747, 808
BstMWI	GCNNNNNNNGC	4 cut(s)	210, 704, 729, 738
BstNI	CCWGG	5 cut(s)	201, 513, 729, 840, 982
BstNSI	RCATGY	1 cut(s)	673
BstSCI	CCNGG	5 cut(s)	199, 511, 727, 838, 980
BstSFI	CTRYAG	3 cut(s)	193, 224, 752
BstSLI	GKGCMC	1 cut(s)	263
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	2 cut(s)	649, 694
BstV2I	GAAGAC	1 cut(s)	597
BstX2I	RGATCY	2 cut(s)	47, 575
BstYI	RGATCY	2 cut(s)	47, 575
Bsu15I	ATCGAT	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	838
BsuTUI	ATCGAT	1 cut(s)	169
BtgZI	GCGATG	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	320
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	3 cut(s)	261, 791, 802
Cac8I	GCNNGC	2 cut(s)	435, 822
CaiI	CAGNNNCTG	2 cut(s)	311, 839
CfoI	GCGC	3 cut(s)	160, 675, 688
Cfr13I	GGNCC	1 cut(s)	836
ClaI	ATCGAT	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	387
CviAII	CATG	2 cut(s)	473, 670
CviQI	GTAC	1 cut(s)	387
DdeI	CTNAG	7 cut(s)	52, 438, 544, 580, 783, 832, 993
DpnI	GATC	7 cut(s)	49, 75, 172, 282, 577, 749, 810
DpnII	GATC	7 cut(s)	47, 73, 170, 280, 575, 747, 808
DraIII	CACNNNGTG	1 cut(s)	817
Eco130I	CCWWGG	2 cut(s)	180, 937
EcoO109I	RGGNCCY	1 cut(s)	836
EcoRI	GAATTC	1 cut(s)	757
EcoRII	CCWGG	5 cut(s)	199, 511, 727, 838, 980
EcoT14I	CCWWGG	2 cut(s)	180, 937
ErhI	CCWWGG	2 cut(s)	180, 937
FaeI	CATG	2 cut(s)	476, 673
FatI	CATG	2 cut(s)	472, 669
FblI	GTMKAC	1 cut(s)	196
Fnu4HI	GCNGC	3 cut(s)	30, 663, 708
FokI	GGATG	1 cut(s)	327
Fsp4HI	GCNGC	3 cut(s)	30, 663, 708
FspBI	CTAG	4 cut(s)	24, 297, 552, 618
FspI	TGCGCA	1 cut(s)	687
GlaI	GCGC	3 cut(s)	159, 674, 687
GluI	GCNGC	3 cut(s)	30, 663, 708
HaeIII	GGCC	1 cut(s)	838
HapII	CCGG	1 cut(s)	45
HhaI	GCGC	3 cut(s)	160, 675, 688
Hin1II	CATG	2 cut(s)	476, 673
Hin6I	GCGC	3 cut(s)	158, 673, 686
HinP1I	GCGC	3 cut(s)	158, 673, 686
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	3 cut(s)	248, 803, 893
Hpy166II	GTNNAC	4 cut(s)	197, 261, 800, 917
Hpy188I	TCNGA	4 cut(s)	285, 410, 631, 763
Hpy188III	TCNNGA	3 cut(s)	45, 524, 573
Hpy8I	GTNNAC	4 cut(s)	197, 261, 800, 917
HpyCH4IV	ACGT	1 cut(s)	913
HpyCH4V	TGCA	8 cut(s)	83, 226, 261, 665, 698, 723, 741, 820
HpyF10VI	GCNNNNNNNGC	4 cut(s)	210, 704, 729, 738
HpyF3I	CTNAG	7 cut(s)	52, 438, 544, 580, 783, 832, 993
HpySE526I	ACGT	1 cut(s)	913
Hsp92II	CATG	2 cut(s)	476, 673
HspAI	GCGC	3 cut(s)	158, 673, 686
Kpn2I	TCCGGA	1 cut(s)	44
Kzo9I	GATC	7 cut(s)	47, 73, 170, 280, 575, 747, 808
LmnI	GCTCC	2 cut(s)	382, 515
Lsp1109I	GCAGC	2 cut(s)	649, 694
LweI	GCATC	1 cut(s)	707
MaeI	CTAG	4 cut(s)	24, 297, 552, 618
MaeII	ACGT	1 cut(s)	913
MaeIII	GTNAC	2 cut(s)	217, 490
MalI	GATC	7 cut(s)	49, 75, 172, 282, 577, 749, 810
MboI	GATC	7 cut(s)	47, 73, 170, 280, 575, 747, 808
MboII	GAAGA	5 cut(s)	433, 561, 596, 602, 961
MflI	RGATCY	2 cut(s)	47, 575
MhlI	GDGCHC	1 cut(s)	263
MluCI	AATT	5 cut(s)	36, 483, 559, 639, 757
MmeI	TCCRAC	1 cut(s)	824
MroI	TCCGGA	1 cut(s)	44
MseI	TTAA	3 cut(s)	123, 426, 855
MslI	CAYNNNNRTG	1 cut(s)	693
MspA1I	CMGCKG	3 cut(s)	56, 584, 662
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	5 cut(s)	201, 513, 729, 840, 982
MvaI	CCWGG	5 cut(s)	201, 513, 729, 840, 982
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	4 cut(s)	210, 704, 729, 738
NdeII	GATC	7 cut(s)	47, 73, 170, 280, 575, 747, 808
NlaIII	CATG	2 cut(s)	476, 673
NlaIV	GGNNCC	2 cut(s)	49, 577
NmuCI	GTSAC	1 cut(s)	217
NsbI	TGCGCA	1 cut(s)	687
NspI	RCATGY	1 cut(s)	673
OliI	CACNNNNGTG	1 cut(s)	693
PkrI	GCNGC	3 cut(s)	31, 664, 709
PshBI	ATTAAT	1 cut(s)	426
Psp6I	CCWGG	5 cut(s)	199, 511, 727, 838, 980
PspGI	CCWGG	5 cut(s)	199, 511, 727, 838, 980
PspN4I	GGNNCC	2 cut(s)	49, 577
PspPI	GGNCC	1 cut(s)	836
PstI	CTGCAG	1 cut(s)	228
PstNI	CAGNNNCTG	2 cut(s)	311, 839
PsuI	RGATCY	2 cut(s)	47, 575
PvuII	CAGCTG	3 cut(s)	56, 584, 662
RsaI	GTAC	1 cut(s)	388
RsaNI	GTAC	1 cut(s)	387
RseI	CAYNNNNRTG	1 cut(s)	693
SaqAI	TTAA	3 cut(s)	123, 426, 855
SatI	GCNGC	3 cut(s)	30, 663, 708
Sau3AI	GATC	7 cut(s)	47, 73, 170, 280, 575, 747, 808
Sau96I	GGNCC	1 cut(s)	836
ScrFI	CCNGG	5 cut(s)	201, 513, 729, 840, 982
SduI	GDGCHC	1 cut(s)	263
SfaNI	GCATC	1 cut(s)	707
SfcI	CTRYAG	3 cut(s)	193, 224, 752
SmiMI	CAYNNNNRTG	1 cut(s)	693
SpeI	ACTAGT	1 cut(s)	617
Sse9I	AATT	5 cut(s)	36, 483, 559, 639, 757
SsiI	CCGC	1 cut(s)	30
SspMI	CTAG	4 cut(s)	24, 297, 552, 618
StyD4I	CCNGG	5 cut(s)	199, 511, 727, 838, 980
StyI	CCWWGG	2 cut(s)	180, 937
TaiI	ACGT	1 cut(s)	916
TaqI	TCGA	2 cut(s)	169, 369
TasI	AATT	5 cut(s)	36, 483, 559, 639, 757
TauI	GCSGC	1 cut(s)	32
Tru1I	TTAA	3 cut(s)	123, 426, 855
Tru9I	TTAA	3 cut(s)	123, 426, 855
TscAI	CASTG	3 cut(s)	268, 791, 802
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	2 cut(s)	662, 707
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	6 cut(s)	75, 126, 461, 603, 924, 990
TspRI	CASTG	3 cut(s)	268, 791, 802
VneI	GTGCAC	1 cut(s)	259
VspI	ATTAAT	1 cut(s)	426
XapI	RAATTY	1 cut(s)	757
XceI	RCATGY	1 cut(s)	673
XmiI	GTMKAC	1 cut(s)	196
XspI	CTAG	4 cut(s)	24, 297, 552, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.