Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Forward (+)

67066062 .. 67068986

Gene Structure 2925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60507

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCTTCTTCCAGCTCCCTTGCTGGAAAGGGAAAACGACATGCCGTTCAGGAGAACTCTCCAGCCTTCTGCTTGAGGATTTTCAGTCGTGAAGATCTCAAAGACGGGAAGAAGGAACTTCCGCCGGCAGCTGTGAGGGAGTATGGACATCATTTGGCAGACCATATATACCTTAAGGTTCCAAATTGTGGAAAACATTGGAAAATAGAGTTGAGAACATCACCTCGTCGTGACCGAATGTGGTTAGAGAAGGGATGGGAAGAGTTTGCCAACTTTTACTTACTAGACCAAGGCGACATGGCAACTTTCAGCTCTGAAGGCGAAAATTCCCATTTCCAAGTAAGCATCTATAGTTGGGATGATATGGAAATAGAATACCCTATTCGCATTGGAGCTGATGTCAGCACACCAGATAGAAAAGAAATAGGAGCTGAAGCTCTAGCTGTAGCCATGTCGGTTTCCCCCAGATCCTCTGCTGATGAACGTGGAAGTGCTAAGGTCAGAAGACGAAGAAGGAGAGTAACAGGATCTGAAGCTGAAGCTAGAGCCATTTCAATTTCCCCAAGATCATCCGCTGATGAACACGAATATGATGTGAGCAGTTTCAGGTCGGACAAGCCATTTCTTGATATCAGAATTCCAGCCAAAACCTTGGCCTTTCGTGTGTTTATAAATCAAGCTTTTGCCTCAGAACATTTCTATAAAGCAGACACTTGTTGTGACTTGACGCTACAGAATAATCAAGGTGACAAAGTTTGGACAATTCAGTGTTGTTCATACAAAAGAAGTAACGGAAGAATACAAGCAATAATTTCAGGTGCTGGTTGGAAAGCATTTAGGCAGGACAATCACCTGGAAGAAGGTGATGTCTGTGTCCTAGAGGTGATAGAGGAACGTAAGTGCAGAGTTTCGATATTCCGAGCTAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

310

Amino Acids

35.29

Weight (kDa)

8.55

Isoelectric Point (pI)

55.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	32 - 117	2.8e-10	B3 DNA binding domain
B3	PF02362	220 - 308	1.4e-13	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	671
AccB7I	CCANNNNNTGG	1 cut(s)	188
AciI	CCGC	2 cut(s)	122, 573
AclWI	GGATC	2 cut(s)	462, 535
AcsI	RAATTY	2 cut(s)	325, 636
AcuI	CTGAAG	4 cut(s)	336, 453, 552, 558
AfiI	CCNNNNNNNGG	1 cut(s)	188
AflII	CTTAAG	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	555
AjnI	CCWGG	1 cut(s)	852
AlwI	GGATC	2 cut(s)	462, 535
AlwNI	CAGNNNCTG	2 cut(s)	530, 821
AoxI	GGCC	1 cut(s)	654
ApeKI	GCWGC	1 cut(s)	128
ApoI	RAATTY	2 cut(s)	325, 636
AsuHPI	GGTGA	5 cut(s)	213, 758, 842, 875, 895
BbsI	GAAGAC	1 cut(s)	511
BbvI	GCAGC	1 cut(s)	140
BccI	CCATC	1 cut(s)	249
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	854
BfaI	CTAG	4 cut(s)	284, 440, 543, 878
BfmI	CTRYAG	3 cut(s)	349, 444, 731
BfrI	CTTAAG	1 cut(s)	173
BglII	AGATCT	1 cut(s)	94
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
Bme1390I	CCNGG	1 cut(s)	854
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	1 cut(s)	854
BmsI	GCATC	1 cut(s)	354
BpiI	GAAGAC	1 cut(s)	511
BpmI	CTGGAG	1 cut(s)	45
Bpu10I	CCTNAGC	1 cut(s)	495
BpuEI	CTTGAG	1 cut(s)	94
BsaJI	CCNNGG	2 cut(s)	289, 651
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse118I	RCCGGY	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	854
BseDI	CCNNGG	2 cut(s)	289, 651
BseGI	GGATG	3 cut(s)	260, 364, 569
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMII	CTCAG	1 cut(s)	702
BseXI	GCAGC	1 cut(s)	140
BsgI	GTGCAG	1 cut(s)	922
BshFI	GGCC	1 cut(s)	656
BsiSI	CCGG	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	188
BsnI	GGCC	1 cut(s)	656
Bsp143I	GATC	4 cut(s)	94, 467, 527, 566
BspACI	CCGC	2 cut(s)	122, 573
BspANI	GGCC	1 cut(s)	656
BspCNI	CTCAG	1 cut(s)	701
BspLI	GGNNCC	1 cut(s)	180
BspPI	GGATC	2 cut(s)	462, 535
BspTI	CTTAAG	1 cut(s)	173
BsrFI	RCCGGY	1 cut(s)	124
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	2 cut(s)	289, 651
BssMI	GATC	4 cut(s)	94, 467, 527, 566
BssT1I	CCWWGG	2 cut(s)	289, 651
Bst2UI	CCWGG	1 cut(s)	854
Bst6I	CTCTTC	1 cut(s)	255
BstAFI	CTTAAG	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	2 cut(s)	495, 688
BstF5I	GGATG	3 cut(s)	260, 364, 569
BstKTI	GATC	4 cut(s)	97, 470, 530, 569
BstMBI	GATC	4 cut(s)	94, 467, 527, 566
BstMWI	GCNNNNNNNGC	1 cut(s)	318
BstNI	CCWGG	1 cut(s)	854
BstNSI	RCATGY	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	852
BstSFI	CTRYAG	3 cut(s)	349, 444, 731
BstV1I	GCAGC	1 cut(s)	140
BstV2I	GAAGAC	1 cut(s)	511
BstX2I	RGATCY	3 cut(s)	94, 467, 527
BstXI	CCANNNNNNTGG	1 cut(s)	652
BstYI	RGATCY	3 cut(s)	94, 467, 527
BsuRI	GGCC	1 cut(s)	656
BtsCI	GGATG	3 cut(s)	260, 364, 569
BtsIMutI	CAGTG	1 cut(s)	773
Cac8I	GCNNGC	1 cut(s)	126
CaiI	CAGNNNCTG	2 cut(s)	530, 821
Cfr10I	RCCGGY	1 cut(s)	124
CseI	GACGC	1 cut(s)	736
CviAII	CATG	3 cut(s)	41, 298, 451
DdeI	CTNAG	2 cut(s)	495, 688
DpnI	GATC	4 cut(s)	96, 469, 529, 568
DpnII	GATC	4 cut(s)	94, 467, 527, 566
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
EciI	GGCGGA	1 cut(s)	111
Eco130I	CCWWGG	2 cut(s)	289, 651
Eco32I	GATATC	1 cut(s)	631
Eco57I	CTGAAG	4 cut(s)	336, 453, 552, 558
EcoRI	GAATTC	1 cut(s)	636
EcoRII	CCWGG	1 cut(s)	852
EcoRV	GATATC	1 cut(s)	631
EcoT14I	CCWWGG	2 cut(s)	289, 651
ErhI	CCWWGG	2 cut(s)	289, 651
FaeI	CATG	3 cut(s)	44, 301, 454
FatI	CATG	3 cut(s)	40, 297, 450
Fnu4HI	GCNGC	1 cut(s)	129
FokI	GGATG	3 cut(s)	267, 371, 556
Fsp4HI	GCNGC	1 cut(s)	129
FspBI	CTAG	4 cut(s)	284, 440, 543, 878
GluI	GCNGC	1 cut(s)	129
GsuI	CTGGAG	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	656
HapII	CCGG	1 cut(s)	125
HgaI	GACGC	1 cut(s)	736
Hin1II	CATG	3 cut(s)	44, 301, 454
HindIII	AAGCTT	1 cut(s)	678
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	5 cut(s)	213, 758, 842, 875, 895
Hpy188I	TCNGA	7 cut(s)	316, 503, 532, 613, 635, 691, 920
Hpy188III	TCNNGA	4 cut(s)	50, 89, 230, 626
Hpy99I	CGWCG	1 cut(s)	231
HpyAV	CCTTC	6 cut(s)	76, 106, 244, 311, 507, 854
HpyCH4IV	ACGT	2 cut(s)	484, 895
HpyCH4V	TGCA	1 cut(s)	903
HpyF10VI	GCNNNNNNNGC	1 cut(s)	318
HpyF3I	CTNAG	2 cut(s)	495, 688
HpySE526I	ACGT	2 cut(s)	484, 895
Hsp92II	CATG	3 cut(s)	44, 301, 454
KroI	GCCGGC	1 cut(s)	124
KroNI	GCCGGC	1 cut(s)	126
Kzo9I	GATC	4 cut(s)	94, 467, 527, 566
LmnI	GCTCC	3 cut(s)	20, 392, 428
Lsp1109I	GCAGC	1 cut(s)	140
LweI	GCATC	1 cut(s)	354
MaeI	CTAG	4 cut(s)	284, 440, 543, 878
MaeII	ACGT	2 cut(s)	484, 895
MaeIII	GTNAC	5 cut(s)	230, 520, 719, 746, 788
MalI	GATC	4 cut(s)	96, 469, 529, 568
MboI	GATC	4 cut(s)	94, 467, 527, 566
MboII	GAAGA	7 cut(s)	104, 121, 272, 516, 522, 807, 869
MflI	RGATCY	3 cut(s)	94, 467, 527
MluCI	AATT	6 cut(s)	184, 325, 555, 636, 762, 810
MmeI	TCCRAC	2 cut(s)	591, 806
MnlI	CCTC	7 cut(s)	69, 129, 234, 481, 697, 874, 883
MroNI	GCCGGC	1 cut(s)	124
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	1 cut(s)	588
MspA1I	CMGCKG	2 cut(s)	131, 575
MspCI	CTTAAG	1 cut(s)	173
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	854
MvaI	CCWGG	1 cut(s)	854
MwoI	GCNNNNNNNGC	1 cut(s)	318
NaeI	GCCGGC	1 cut(s)	126
NdeII	GATC	4 cut(s)	94, 467, 527, 566
NgoMIV	GCCGGC	1 cut(s)	124
NlaIII	CATG	3 cut(s)	44, 301, 454
NlaIV	GGNNCC	1 cut(s)	180
NmuCI	GTSAC	3 cut(s)	230, 719, 746
NspI	RCATGY	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	1 cut(s)	232
PdiI	GCCGGC	1 cut(s)	126
PflMI	CCANNNNNTGG	1 cut(s)	188
PkrI	GCNGC	1 cut(s)	130
PsiI	TTATAA	1 cut(s)	671
Psp6I	CCWGG	1 cut(s)	852
PspGI	CCWGG	1 cut(s)	852
PspN4I	GGNNCC	1 cut(s)	180
PstNI	CAGNNNCTG	2 cut(s)	530, 821
PsuI	RGATCY	3 cut(s)	94, 467, 527
PvuII	CAGCTG	1 cut(s)	131
RseI	CAYNNNNRTG	1 cut(s)	588
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	4 cut(s)	94, 467, 527, 566
ScrFI	CCNGG	1 cut(s)	854
SfaNI	GCATC	1 cut(s)	354
SfcI	CTRYAG	3 cut(s)	349, 444, 731
SmiMI	CAYNNNNRTG	1 cut(s)	588
SmlI	CTYRAG	2 cut(s)	73, 173
SmoI	CTYRAG	2 cut(s)	73, 173
Sse9I	AATT	6 cut(s)	184, 325, 555, 636, 762, 810
SsiI	CCGC	2 cut(s)	122, 573
SspMI	CTAG	4 cut(s)	284, 440, 543, 878
StyD4I	CCNGG	1 cut(s)	852
StyI	CCWWGG	2 cut(s)	289, 651
TaiI	ACGT	2 cut(s)	487, 898
TaqI	TCGA	1 cut(s)	911
TaqII	GACCGA	1 cut(s)	249
TasI	AATT	6 cut(s)	184, 325, 555, 636, 762, 810
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	1 cut(s)	773
TseFI	GTSAC	3 cut(s)	230, 719, 746
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	3 cut(s)	230, 719, 746
TspDTI	ATGAA	3 cut(s)	495, 594, 765
TspGWI	ACGGA	1 cut(s)	807
TspRI	CASTG	1 cut(s)	773
Van91I	CCANNNNNTGG	1 cut(s)	188
Vha464I	CTTAAG	1 cut(s)	173
XapI	RAATTY	2 cut(s)	325, 636
XceI	RCATGY	1 cut(s)	44
XspI	CTAG	4 cut(s)	284, 440, 543, 878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.