Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Reverse (-)

1112510 .. 1119916

Gene Structure 7407 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026188

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGAGAAATGGGTAGGGTCAGACGACTCTTATATTGTATTGGATCTGGGAGATAAGAGAAAAGGAAGAAATTACATGTTTTTTAGTTCGCGCTCTTGTGAAAGGAGTCAAGGTCGACGTCCTCAAAAGACTCTTGCTGTGGGGAAGCATGGAGATAAAATAGCAGAACATATCTTCCTCAGGATTCCAAATTGTGGAAGGCCTTGGGAAATCCAATTGAGAAAATCAACTTATGATCATGCCAACTGTTACAGACTAGACCAAGGCTGTCTGGCAATCTTTCGCTACAAAGGAGAACATTCCCGTTTCCAAGTACGCATCTTTGGTTGGAATGATATTGAAATAGAATACCCTATTCGTGGAGGAACAGAGAAAGTGAATACAAAGGAGAGAAAAGGAGAAATAGAACAATTGAGGGAGTTTATAAATCAAGCTTTTGCCTCGGAACATTTCTATAAAGCAGACACTTGTTGTGACTTGGTGCTACAGAATATTCAAGGTGACAAAGTTTGGACAATTCAGTGTTGTTCATACAAAAGAAGTAATGGAAGAATACAAGCAATAATTTCAGGTGCTGGTTGGAAAGCATTTAGGCAGGACAATCATCTGGAAGAAGGTGATGTCTGTGTGCTAGAGGTGATAGAGGAACGTAAGTGCAGAGTTTCGATATTCCGAGCTAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

229

Amino Acids

26.65

Weight (kDa)

9.06

Isoelectric Point (pI)

49.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	142 - 226	6.7e-13	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	425
AatII	GACGTC	1 cut(s)	121
AccB7I	CCANNNNNTGG	1 cut(s)	194
AccI	GTMKAC	1 cut(s)	115
AccII	CGCG	1 cut(s)	91
AclWI	GGATC	1 cut(s)	51
AcyI	GRCGYC	1 cut(s)	118
AfaI	GTAC	1 cut(s)	315
AfiI	CCNNNNNNNGG	2 cut(s)	194, 359
AflIII	ACRYGT	1 cut(s)	75
AgsI	TTSAA	2 cut(s)	341, 497
AloI	GAACNNNNNNTCC	2 cut(s)	159, 191
AluBI	AGCT	2 cut(s)	434, 677
AluI	AGCT	2 cut(s)	434, 677
AlwI	GGATC	1 cut(s)	51
AlwNI	CAGNNNCTG	1 cut(s)	575
AoxI	GGCC	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	93
AsuHPI	GGTGA	3 cut(s)	512, 629, 649
AxyI	CCTNAGG	1 cut(s)	179
BclI	TGATCA	1 cut(s)	235
BfaI	CTAG	2 cut(s)	257, 632
BfmI	CTRYAG	1 cut(s)	485
BmsI	GCATC	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	118
BsaJI	CCNNGG	3 cut(s)	203, 262, 441
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 359
Bse21I	CCTNAGG	1 cut(s)	179
BseDI	CCNNGG	3 cut(s)	203, 262, 441
BseLI	CCNNNNNNNGG	2 cut(s)	194, 359
BseMII	CTCAG	1 cut(s)	193
BsgI	GTGCAG	1 cut(s)	676
Bsh1236I	CGCG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	202
BslI	CCNNNNNNNGG	2 cut(s)	194, 359
BsnI	GGCC	1 cut(s)	202
Bsp143I	GATC	2 cut(s)	43, 235
BspANI	GGCC	1 cut(s)	202
BspCNI	CTCAG	1 cut(s)	192
BspFNI	CGCG	1 cut(s)	91
BspPI	GGATC	1 cut(s)	51
BssECI	CCNNGG	3 cut(s)	203, 262, 441
BssMI	GATC	2 cut(s)	43, 235
BssNI	GRCGYC	1 cut(s)	118
BssT1I	CCWWGG	2 cut(s)	203, 262
Bst4CI	ACNGT	1 cut(s)	248
BstACI	GRCGYC	1 cut(s)	118
BstDEI	CTNAG	1 cut(s)	179
BstFNI	CGCG	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	2 cut(s)	46, 238
BstMBI	GATC	2 cut(s)	43, 235
BstNSI	RCATGY	1 cut(s)	79
BstSFI	CTRYAG	1 cut(s)	485
BstUI	CGCG	1 cut(s)	91
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
Bsu36I	CCTNAGG	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	527
CaiI	CAGNNNCTG	1 cut(s)	575
CfoI	GCGC	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	314
CviAII	CATG	3 cut(s)	76, 149, 239
CviJI	RGCY	4 cut(s)	202, 267, 434, 677
CviKI_1	RGCY	4 cut(s)	202, 267, 434, 677
CviQI	GTAC	1 cut(s)	314
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	2 cut(s)	45, 237
DpnII	GATC	2 cut(s)	43, 235
Eco130I	CCWWGG	2 cut(s)	203, 262
Eco147I	AGGCCT	1 cut(s)	202
Eco81I	CCTNAGG	1 cut(s)	179
EcoT14I	CCWWGG	2 cut(s)	203, 262
ErhI	CCWWGG	2 cut(s)	203, 262
FaeI	CATG	3 cut(s)	79, 152, 242
FaiI	YATR	9 cut(s)	33, 77, 150, 171, 234, 240, 425, 456, 532
FatI	CATG	3 cut(s)	75, 148, 238
FbaI	TGATCA	1 cut(s)	235
FblI	GTMKAC	1 cut(s)	115
FspBI	CTAG	2 cut(s)	257, 632
GlaI	GCGC	1 cut(s)	92
HaeIII	GGCC	1 cut(s)	202
HhaI	GCGC	1 cut(s)	93
Hin1I	GRCGYC	1 cut(s)	118
Hin1II	CATG	3 cut(s)	79, 152, 242
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	116
HindII	GTYRAC	1 cut(s)	116
HindIII	AAGCTT	1 cut(s)	432
HinfI	GANTC	4 cut(s)	26, 106, 130, 184
HphI	GGTGA	3 cut(s)	512, 629, 649
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	3 cut(s)	22, 445, 674
Hpy188III	TCNNGA	2 cut(s)	181, 608
Hpy8I	GTNNAC	1 cut(s)	116
Hpy99I	CGWCG	1 cut(s)	120
HpyAV	CCTTC	2 cut(s)	192, 608
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4IV	ACGT	2 cut(s)	118, 649
HpyCH4V	TGCA	1 cut(s)	657
HpyF3I	CTNAG	1 cut(s)	179
HpySE526I	ACGT	2 cut(s)	118, 649
Hsp92I	GRCGYC	1 cut(s)	118
Hsp92II	CATG	3 cut(s)	79, 152, 242
HspAI	GCGC	1 cut(s)	91
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	43, 235
LpnPI	CCDG	7 cut(s)	32, 166, 257, 555, 561, 581, 593
LweI	GCATC	1 cut(s)	327
MaeI	CTAG	2 cut(s)	257, 632
MaeII	ACGT	2 cut(s)	118, 649
MaeIII	GTNAC	3 cut(s)	248, 473, 500
MalI	GATC	2 cut(s)	45, 237
MboI	GATC	2 cut(s)	43, 235
MboII	GAAGA	4 cut(s)	78, 166, 561, 623
MfeI	CAATTG	2 cut(s)	215, 410
MflI	RGATCY	1 cut(s)	43
MluCI	AATT	6 cut(s)	70, 190, 215, 410, 516, 564
MlyI	GAGTC	3 cut(s)	20, 115, 124
MmeI	TCCRAC	2 cut(s)	308, 560
MnlI	CCTC	7 cut(s)	132, 188, 356, 408, 451, 628, 637
MunI	CAATTG	2 cut(s)	215, 410
MvnI	CGCG	1 cut(s)	91
NdeII	GATC	2 cut(s)	43, 235
NlaIII	CATG	3 cut(s)	79, 152, 242
NmuCI	GTSAC	2 cut(s)	473, 500
NspI	RCATGY	1 cut(s)	79
PceI	AGGCCT	1 cut(s)	202
PciI	ACATGT	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	184
PflMI	CCANNNNNTGG	1 cut(s)	194
PleI	GAGTC	3 cut(s)	20, 114, 124
PpsI	GAGTC	3 cut(s)	20, 114, 124
PscI	ACATGT	1 cut(s)	75
PsiI	TTATAA	1 cut(s)	425
PstNI	CAGNNNCTG	1 cut(s)	575
PsuI	RGATCY	1 cut(s)	43
RsaI	GTAC	1 cut(s)	315
RsaNI	GTAC	1 cut(s)	314
SalI	GTCGAC	1 cut(s)	114
Sau3AI	GATC	2 cut(s)	43, 235
SchI	GAGTC	3 cut(s)	20, 115, 124
SetI	ASST	9 cut(s)	115, 121, 436, 502, 574, 619, 639, 652, 679
SfaNI	GCATC	1 cut(s)	327
SfcI	CTRYAG	1 cut(s)	485
Sse9I	AATT	6 cut(s)	70, 190, 215, 410, 516, 564
SseBI	AGGCCT	1 cut(s)	202
SspI	AATATT	1 cut(s)	493
SspMI	CTAG	2 cut(s)	257, 632
StuI	AGGCCT	1 cut(s)	202
StyI	CCWWGG	2 cut(s)	203, 262
TaaI	ACNGT	1 cut(s)	248
TaiI	ACGT	2 cut(s)	121, 652
TaqI	TCGA	2 cut(s)	115, 665
TasI	AATT	6 cut(s)	70, 190, 215, 410, 516, 564
TfiI	GAWTC	1 cut(s)	184
TscAI	CASTG	1 cut(s)	527
TseFI	GTSAC	2 cut(s)	473, 500
Tsp45I	GTSAC	2 cut(s)	473, 500
TspDTI	ATGAA	1 cut(s)	519
TspRI	CASTG	1 cut(s)	527
Van91I	CCANNNNNTGG	1 cut(s)	194
XceI	RCATGY	1 cut(s)	79
XmiI	GTMKAC	1 cut(s)	115
XspI	CTAG	2 cut(s)	257, 632
ZraI	GACGTC	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.