Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Forward (+)

65864866 .. 65867051

Gene Structure 2186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00274210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGCCACAATGTCACGCCCAATGGCTTCTCGGAGCAAGAGAGAGGGAAGAGGACATGCCTTCCCGGTGGACTCTCCAAGCTTCTGCTTGAAGATTGTTACTGCTGTGGATCTCCAAGATGGGAAGGAACTTCCAGAGCCAGCTGTGAGGAAGTATGGGAATTGTATGGCAGACTCCATATTCCTCAAGGTTCCCAATTGCGGAACATCATGGCCAGTAGAACTGAAAAAAAACGATTCGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

81

Amino Acids

8.99

Weight (kDa)

8.93

Isoelectric Point (pI)

64.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	1 cut(s)	117
AcoI	YGGCCR	2 cut(s)	3, 212
AfiI	CCNNNNNNNGG	1 cut(s)	200
AgsI	TTSAA	1 cut(s)	91
AluBI	AGCT	2 cut(s)	81, 143
AluI	AGCT	2 cut(s)	81, 143
AlwI	GGATC	1 cut(s)	117
AoxI	GGCC	2 cut(s)	3, 212
AsuC2I	CCSGG	1 cut(s)	65
BalI	TGGCCA	2 cut(s)	5, 214
BccI	CCATC	1 cut(s)	113
BcnI	CCSGG	1 cut(s)	65
Bme1390I	CCNGG	1 cut(s)	65
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	215
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseNI	ACTGG	1 cut(s)	215
BshFI	GGCC	2 cut(s)	5, 214
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	200
BsnI	GGCC	2 cut(s)	5, 214
Bsp143I	GATC	1 cut(s)	109
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	2 cut(s)	5, 214
BspLI	GGNNCC	1 cut(s)	192
BspPI	GGATC	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	215
BssMI	GATC	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	141
BstKTI	GATC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	109
BstNSI	RCATGY	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	5, 214
Cac8I	GCNNGC	1 cut(s)	141
CviAII	CATG	2 cut(s)	56, 210
CviJI	RGCY	6 cut(s)	5, 26, 81, 139, 143, 214
CviKI_1	RGCY	6 cut(s)	5, 26, 81, 139, 143, 214
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
EaeI	YGGCCR	2 cut(s)	3, 212
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
FaeI	CATG	2 cut(s)	59, 213
FaiI	YATR	5 cut(s)	57, 156, 167, 179, 211
FatI	CATG	2 cut(s)	55, 209
HaeIII	GGCC	2 cut(s)	5, 214
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	2 cut(s)	59, 213
HindIII	AAGCTT	1 cut(s)	79
HinfI	GANTC	3 cut(s)	71, 173, 236
HpaII	CCGG	1 cut(s)	65
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	1 cut(s)	33
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	1 cut(s)	70
HpyAV	CCTTC	2 cut(s)	70, 118
Hsp92II	CATG	2 cut(s)	59, 213
Kzo9I	GATC	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	4 cut(s)	78, 147, 153, 228
MaeIII	GTNAC	2 cut(s)	12, 97
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	2 cut(s)	60, 103
MfeI	CAATTG	1 cut(s)	196
MflI	RGATCY	1 cut(s)	109
MlsI	TGGCCA	2 cut(s)	5, 214
MluCI	AATT	2 cut(s)	160, 196
MluNI	TGGCCA	2 cut(s)	5, 214
MlyI	GAGTC	2 cut(s)	65, 167
MnlI	CCTC	4 cut(s)	37, 44, 141, 194
Mox20I	TGGCCA	2 cut(s)	5, 214
MscI	TGGCCA	2 cut(s)	5, 214
Msp20I	TGGCCA	2 cut(s)	5, 214
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	65
MunI	CAATTG	1 cut(s)	196
NciI	CCSGG	1 cut(s)	65
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	2 cut(s)	59, 213
NlaIV	GGNNCC	1 cut(s)	192
NmuCI	GTSAC	1 cut(s)	12
NspI	RCATGY	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	236
PleI	GAGTC	2 cut(s)	65, 167
PpsI	GAGTC	2 cut(s)	65, 167
PspN4I	GGNNCC	1 cut(s)	192
PsuI	RGATCY	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	143
Sau3AI	GATC	1 cut(s)	109
SchI	GAGTC	2 cut(s)	65, 167
ScrFI	CCNGG	1 cut(s)	65
SetI	ASST	3 cut(s)	83, 145, 192
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	2 cut(s)	160, 196
SsiI	CCGC	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	63
TasI	AATT	2 cut(s)	160, 196
TfiI	GAWTC	1 cut(s)	236
TseFI	GTSAC	1 cut(s)	12
Tsp45I	GTSAC	1 cut(s)	12
XceI	RCATGY	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.