FvH4_7g32750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000407
Physical Location & Seq
Forward (+)
23485329 .. 23486811
1483 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g32750.t1

Sequence Viewer

Length: 267 bp
ATGGACGAAATGTCCTCTCGACCTCGGCCAGCCACCGACTCCTCACCTGATTCTGAAGATAGGGTAAGAAGACGAAGAAGGAGACAAATAGGATTTGAAGCTGAAGCTAGAGCCATTTCAGTTTCCCCCAGATGCTTAGCTGATGAACACGAATATGATACTTCCCAAATGAGCAGTTTCAGGTCGGACAAGCCATTTCTTGATATCAGAATTCCAGCCAAAATCATGTCCTTTAGTGTGTATTATTTGCAAATTTGCAGTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.25

Weight (kDa)

7.81

Isoelectric Point (pI)

104.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000407)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 265
AcoI YGGCCR 1 cut(s) 26
AcsI RAATTY 2 cut(s) 210, 252
AcuI CTGAAG 2 cut(s) 75, 123
AgsI TTSAA 1 cut(s) 98
AhdI GACNNNNNGTC 1 cut(s) 10
AluBI AGCT 3 cut(s) 101, 107, 140
AluI AGCT 3 cut(s) 101, 107, 140
Alw26I GTCTC 1 cut(s) 76
AoxI GGCC 1 cut(s) 26
ApoI RAATTY 2 cut(s) 210, 252
AsuHPI GGTGA 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 76
BfaI CTAG 1 cut(s) 108
BlpI GCTNAGC 1 cut(s) 136
BmeRI GACNNNNNGTC 1 cut(s) 10
BmsI GCATC 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 76
Bpu1102I GCTNAGC 1 cut(s) 136
BsaJI CCNNGG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 23
BseRI GAGGAG 1 cut(s) 31
BshFI GGCC 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 76
BsnI GGCC 1 cut(s) 28
Bsp1720I GCTNAGC 1 cut(s) 136
BspANI GGCC 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 76
BstV2I GAAGAC 1 cut(s) 76
BsuRI GGCC 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 30
CviAII CATG 1 cut(s) 226
CviJI RGCY 8 cut(s) 28, 32, 101, 107, 113, 140, 193, 218
CviKI_1 RGCY 8 cut(s) 28, 32, 101, 107, 113, 140, 193, 218
DdeI CTNAG 1 cut(s) 136
DriI GACNNNNNGTC 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 26
Eam1105I GACNNNNNGTC 1 cut(s) 10
Eco32I GATATC 1 cut(s) 205
Eco57I CTGAAG 2 cut(s) 75, 123
EcoRI GAATTC 1 cut(s) 210
EcoRV GATATC 1 cut(s) 205
FaeI CATG 1 cut(s) 229
FaiI YATR 3 cut(s) 156, 227, 265
FatI CATG 1 cut(s) 225
FspBI CTAG 1 cut(s) 108
HaeIII GGCC 1 cut(s) 28
Hin1II CATG 1 cut(s) 229
HinfI GANTC 2 cut(s) 38, 50
HphI GGTGA 1 cut(s) 36
Hpy188I TCNGA 3 cut(s) 55, 187, 209
Hpy188III TCNNGA 2 cut(s) 18, 200
HpyAV CCTTC 1 cut(s) 72
HpyCH4V TGCA 2 cut(s) 250, 258
HpyF3I CTNAG 1 cut(s) 136
Hsp92II CATG 1 cut(s) 229
LpnPI CCDG 5 cut(s) 42, 60, 142, 166, 228
LweI GCATC 1 cut(s) 122
MaeI CTAG 1 cut(s) 108
MboII GAAGA 3 cut(s) 68, 81, 87
MluCI AATT 2 cut(s) 210, 252
MlyI GAGTC 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 3 cut(s) 25, 33, 52
MslI CAYNNNNRTG 1 cut(s) 153
NlaIII CATG 1 cut(s) 229
NmeAIII GCCGAG 1 cut(s) 4
PfeI GAWTC 1 cut(s) 50
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
PsiI TTATAA 1 cut(s) 265
RseI CAYNNNNRTG 1 cut(s) 153
SchI GAGTC 1 cut(s) 32
SetI ASST 6 cut(s) 25, 49, 103, 109, 142, 185
SfaNI GCATC 1 cut(s) 122
SmiMI CAYNNNNRTG 1 cut(s) 153
Sse9I AATT 2 cut(s) 210, 252
SspMI CTAG 1 cut(s) 108
TaqI TCGA 1 cut(s) 19
TasI AATT 2 cut(s) 210, 252
TfiI GAWTC 1 cut(s) 50
TspDTI ATGAA 1 cut(s) 159
XapI RAATTY 2 cut(s) 210, 252
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.