Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Reverse (-)

57811571 .. 57812822

Gene Structure 1252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0447800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGATGGCCACCTGTATTGTCTCGCCACTTCGTTTCACTCTCCCCCTTTCTCATCTCTCAAGCACCCGAGTTGGATTCGGGCCAAAACCTTCACCCACCGCCCCGAGTCGACTCGGATTCAACTCAATGTCTCAACCGGCCTCGGAAGCCAATCCGGACTCCTCGAAACCCGAGACCCCCGACGTCCTCGTTCAGTACGTGGTGCTCCGGCGAGACCTAATCGACACGTGGCCGCTGGGCAGTGTGGTAACACAGGGCTGCCATGCCTCCGTCTCCGCCATCTGGTCCCACAAAGACGACCCACACACGCTCCAGTATTGTAGCCCTGAAAATATCGATTCTATGCATAAGGTTACTCTTGAGGTGAAGGGAGAACCTCAAATATTGAACTTGTCTGAGAAGCTCAAAGCTGGTGGCATAGAGCACAAACTGTGGATTGAGCAACCTGAGAATTTCCCAACTTGTCTCGCTACGAAACCTTACCCCAAATCCATCGTATCTTCGTATTTTAAAAAGTTGAAGCTCTGTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

177

Amino Acids

19.56

Weight (kDa)

8.58

Isoelectric Point (pI)

58.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTH2	PF01981	64 - 176	1.5e-24	Peptidyl-tRNA hydrolase PTH2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	186
AccI	GTMKAC	1 cut(s)	109
AccIII	TCCGGA	1 cut(s)	154
AciI	CCGC	3 cut(s)	99, 233, 276
AcoI	YGGCCR	2 cut(s)	6, 230
AcsI	RAATTY	1 cut(s)	451
AcvI	CACGTG	1 cut(s)	228
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	282
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	3 cut(s)	121, 388, 520
AluBI	AGCT	3 cut(s)	403, 410, 523
AluI	AGCT	3 cut(s)	403, 410, 523
Alw21I	GWGCWC	2 cut(s)	207, 426
Alw26I	GTCTC	6 cut(s)	25, 135, 167, 207, 277, 470
Ama87I	CYCGRG	3 cut(s)	66, 103, 170
Aor13HI	TCCGGA	1 cut(s)	154
AoxI	GGCC	4 cut(s)	6, 80, 138, 230
ApeKI	GCWGC	1 cut(s)	258
ApoI	RAATTY	1 cut(s)	451
AspS9I	GGNCC	2 cut(s)	80, 285
AsuHPI	GGTGA	2 cut(s)	84, 376
AvaI	CYCGRG	3 cut(s)	66, 103, 170
AvaII	GGWCC	1 cut(s)	285
BalI	TGGCCA	1 cut(s)	8
BbrPI	CACGTG	1 cut(s)	228
Bbv12I	GWGCWC	2 cut(s)	207, 426
BbvI	GCAGC	1 cut(s)	245
BccI	CCATC	2 cut(s)	287, 500
BcoDI	GTCTC	6 cut(s)	25, 135, 167, 207, 277, 470
BisI	GCNGC	2 cut(s)	233, 259
BlsI	GCNGC	2 cut(s)	234, 260
Bme18I	GGWCC	1 cut(s)	285
BmeT110I	CYCGRG	3 cut(s)	66, 103, 170
BmgT120I	GGNCC	2 cut(s)	80, 285
BmiI	GGNNCC	1 cut(s)	287
BpmI	CTGGAG	1 cut(s)	296
BpuEI	CTTGAG	2 cut(s)	43, 380
Bsa29I	ATCGAT	1 cut(s)	336
BsaAI	YACGTR	2 cut(s)	199, 228
BsaHI	GRCGYC	1 cut(s)	183
BsaI	GGTCTC	2 cut(s)	167, 207
BsaJI	CCNNGG	1 cut(s)	141
BsaWI	WCCGGW	1 cut(s)	154
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse118I	RCCGGY	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	313
BseAI	TCCGGA	1 cut(s)	154
BseCI	ATCGAT	1 cut(s)	336
BseDI	CCNNGG	1 cut(s)	141
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMII	CTCAG	2 cut(s)	387, 438
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	1 cut(s)	151
BseXI	GCAGC	1 cut(s)	245
BseYI	CCCAGC	1 cut(s)	235
BshFI	GGCC	4 cut(s)	8, 82, 140, 232
BshVI	ATCGAT	1 cut(s)	336
BsiHKAI	GWGCWC	2 cut(s)	207, 426
BsiHKCI	CYCGRG	3 cut(s)	66, 103, 170
BsiSI	CCGG	3 cut(s)	137, 155, 208
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	6 cut(s)	25, 135, 167, 207, 277, 470
BsmBI	CGTCTC	1 cut(s)	277
BsmFI	GGGAC	1 cut(s)	271
BsnI	GGCC	4 cut(s)	8, 82, 140, 232
Bso31I	GGTCTC	2 cut(s)	167, 207
BsoBI	CYCGRG	3 cut(s)	66, 103, 170
Bsp1286I	GDGCHC	2 cut(s)	207, 426
Bsp13I	TCCGGA	1 cut(s)	154
BspACI	CCGC	3 cut(s)	99, 233, 276
BspANI	GGCC	4 cut(s)	8, 82, 140, 232
BspCNI	CTCAG	2 cut(s)	388, 439
BspDI	ATCGAT	1 cut(s)	336
BspEI	TCCGGA	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	287
BspTNI	GGTCTC	2 cut(s)	167, 207
BsrFI	RCCGGY	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	313
BssAI	RCCGGY	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	141
BssNI	GRCGYC	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	432
BstACI	GRCGYC	1 cut(s)	183
BstBAI	YACGTR	2 cut(s)	199, 228
BstDEI	CTNAG	2 cut(s)	396, 447
BstMAI	GTCTC	6 cut(s)	25, 135, 167, 207, 277, 470
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstV1I	GCAGC	1 cut(s)	245
Bsu15I	ATCGAT	1 cut(s)	336
BsuRI	GGCC	4 cut(s)	8, 82, 140, 232
BsuTUI	ATCGAT	1 cut(s)	336
BtsI	GCAGTG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	247
Cfr10I	RCCGGY	1 cut(s)	136
Cfr13I	GGNCC	2 cut(s)	80, 285
ClaI	ATCGAT	1 cut(s)	336
Csp6I	GTAC	1 cut(s)	196
CspCI	CAANNNNNGTGG	3 cut(s)	33, 394, 429
CviAII	CATG	1 cut(s)	263
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	2 cut(s)	396, 447
DraI	TTTAAA	1 cut(s)	511
EaeI	YGGCCR	2 cut(s)	6, 230
EciI	GGCGGA	1 cut(s)	265
Eco31I	GGTCTC	2 cut(s)	167, 207
Eco47I	GGWCC	1 cut(s)	285
Eco72I	CACGTG	1 cut(s)	228
Eco88I	CYCGRG	3 cut(s)	66, 103, 170
EcoT22I	ATGCAT	1 cut(s)	348
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	1 cut(s)	266
FaiI	YATR	4 cut(s)	264, 344, 348, 419
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	1 cut(s)	262
FblI	GTMKAC	1 cut(s)	109
Fnu4HI	GCNGC	2 cut(s)	233, 259
Fsp4HI	GCNGC	2 cut(s)	233, 259
GluI	GCNGC	2 cut(s)	233, 259
GsaI	CCCAGC	1 cut(s)	239
GsuI	CTGGAG	1 cut(s)	296
HaeIII	GGCC	4 cut(s)	8, 82, 140, 232
HapII	CCGG	3 cut(s)	137, 155, 208
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	1 cut(s)	266
HincII	GTYRAC	1 cut(s)	110
HindII	GTYRAC	1 cut(s)	110
HinfI	GANTC	6 cut(s)	75, 106, 111, 117, 158, 338
HpaII	CCGG	3 cut(s)	137, 155, 208
HphI	GGTGA	2 cut(s)	84, 376
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	3 cut(s)	116, 145, 397
Hpy188III	TCNNGA	2 cut(s)	155, 359
Hpy8I	GTNNAC	1 cut(s)	110
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	2 cut(s)	99, 361
HpyCH4III	ACNGT	1 cut(s)	432
HpyCH4IV	ACGT	3 cut(s)	183, 198, 227
HpyCH4V	TGCA	1 cut(s)	346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	2 cut(s)	396, 447
HpySE526I	ACGT	3 cut(s)	183, 198, 227
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	266
Kpn2I	TCCGGA	1 cut(s)	154
LmnI	GCTCC	2 cut(s)	210, 315
Lsp1109I	GCAGC	1 cut(s)	245
MaeII	ACGT	3 cut(s)	183, 198, 227
MaeIII	GTNAC	2 cut(s)	247, 352
MboII	GAAGA	1 cut(s)	492
MhlI	GDGCHC	2 cut(s)	207, 426
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	1 cut(s)	451
MluNI	TGGCCA	1 cut(s)	8
MlyI	GAGTC	3 cut(s)	105, 115, 152
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	6 cut(s)	151, 172, 197, 277, 355, 387
Mox20I	TGGCCA	1 cut(s)	8
Mph1103I	ATGCAT	1 cut(s)	348
MroI	TCCGGA	1 cut(s)	154
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	1 cut(s)	510
Msp20I	TGGCCA	1 cut(s)	8
MspA1I	CMGCKG	1 cut(s)	235
MspI	CCGG	3 cut(s)	137, 155, 208
MwoI	GCNNNNNNNGC	1 cut(s)	146
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	1 cut(s)	287
NsiI	ATGCAT	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PfeI	GAWTC	3 cut(s)	75, 117, 338
PkrI	GCNGC	2 cut(s)	234, 260
PleI	GAGTC	3 cut(s)	105, 114, 152
PmaCI	CACGTG	1 cut(s)	228
PmlI	CACGTG	1 cut(s)	228
PpsI	GAGTC	3 cut(s)	105, 114, 152
Ppu21I	YACGTR	2 cut(s)	199, 228
PspCI	CACGTG	1 cut(s)	228
PspFI	CCCAGC	1 cut(s)	235
PspN4I	GGNNCC	1 cut(s)	287
PspPI	GGNCC	2 cut(s)	80, 285
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SalI	GTCGAC	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	510
SatI	GCNGC	2 cut(s)	233, 259
Sau96I	GGNCC	2 cut(s)	80, 285
SchI	GAGTC	3 cut(s)	105, 115, 152
SduI	GDGCHC	2 cut(s)	207, 426
SinI	GGWCC	1 cut(s)	285
SmlI	CTYRAG	2 cut(s)	58, 359
SmoI	CTYRAG	2 cut(s)	58, 359
Sse9I	AATT	1 cut(s)	451
SsiI	CCGC	3 cut(s)	99, 233, 276
SspI	AATATT	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	432
TaiI	ACGT	3 cut(s)	186, 201, 230
TaqI	TCGA	4 cut(s)	109, 164, 222, 336
TasI	AATT	1 cut(s)	451
TauI	GCSGC	1 cut(s)	235
TfiI	GAWTC	3 cut(s)	75, 117, 338
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TscAI	CASTG	1 cut(s)	247
TseI	GCWGC	1 cut(s)	258
TspGWI	ACGGA	1 cut(s)	259
TspRI	CASTG	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	285
XapI	RAATTY	1 cut(s)	451
XmiI	GTMKAC	1 cut(s)	109
ZraI	GACGTC	1 cut(s)	184
Zsp2I	ATGCAT	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.