B3 domain-containing
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 587 |
| Acc16I | TGCGCA | 1 cut(s) | 1014 |
| Acc36I | ACCTGC | 1 cut(s) | 466 |
| AccI | GTMKAC | 2 cut(s) | 400, 1051 |
| AccIII | TCCGGA | 2 cut(s) | 466, 899 |
| AciI | CCGC | 1 cut(s) | 885 |
| AclWI | GGATC | 2 cut(s) | 897, 910 |
| AcoI | YGGCCR | 1 cut(s) | 646 |
| AcsI | RAATTY | 4 cut(s) | 59, 71, 1155, 1374 |
| AcvI | CACGTG | 1 cut(s) | 419 |
| AfaI | GTAC | 5 cut(s) | 354, 409, 557, 756, 1243 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 200, 800, 1328 |
| AflIII | ACRYGT | 1 cut(s) | 757 |
| AgsI | TTSAA | 5 cut(s) | 188, 891, 952, 1249, 1372 |
| AjiI | CACGTC | 1 cut(s) | 17 |
| AjnI | CCWGG | 1 cut(s) | 1054 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 294, 326, 342, 374 |
| Alw21I | GWGCWC | 1 cut(s) | 1118 |
| Alw26I | GTCTC | 1 cut(s) | 131 |
| Alw44I | GTGCAC | 1 cut(s) | 1114 |
| AlwI | GGATC | 2 cut(s) | 897, 910 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1166 |
| Ama87I | CYCGRG | 1 cut(s) | 587 |
| Aor13HI | TCCGGA | 2 cut(s) | 466, 899 |
| AoxI | GGCC | 1 cut(s) | 646 |
| ApaLI | GTGCAC | 1 cut(s) | 1114 |
| ApeKI | GCWGC | 4 cut(s) | 306, 708, 938, 941 |
| ApoI | RAATTY | 4 cut(s) | 59, 71, 1155, 1374 |
| AseI | ATTAAT | 1 cut(s) | 1281 |
| AspLEI | GCGC | 1 cut(s) | 1015 |
| AspS9I | GGNCC | 1 cut(s) | 455 |
| AsuHPI | GGTGA | 1 cut(s) | 1103 |
| AvaI | CYCGRG | 1 cut(s) | 587 |
| AvaII | GGWCC | 1 cut(s) | 455 |
| BaeGI | GKGCMC | 1 cut(s) | 1118 |
| BamHI | GGATCC | 1 cut(s) | 902 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 345, 377 |
| BauI | CACGAG | 1 cut(s) | 639 |
| BbrPI | CACGTG | 1 cut(s) | 419 |
| Bbv12I | GWGCWC | 1 cut(s) | 1118 |
| BbvI | GCAGC | 4 cut(s) | 293, 695, 928, 950 |
| BccI | CCATC | 7 cut(s) | 113, 261, 440, 515, 663, 809, 1164 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 917, 951, 1004, 1038 |
| BciT130I | CCWGG | 1 cut(s) | 1056 |
| BclI | TGATCA | 1 cut(s) | 172 |
| BcoDI | GTCTC | 1 cut(s) | 131 |
| BfaI | CTAG | 4 cut(s) | 296, 698, 879, 1152 |
| BfmI | CTRYAG | 3 cut(s) | 936, 1048, 1079 |
| BfuAI | ACCTGC | 1 cut(s) | 466 |
| BisI | GCNGC | 5 cut(s) | 307, 709, 885, 939, 942 |
| BlpI | GCTNAGC | 1 cut(s) | 712 |
| BlsI | GCNGC | 5 cut(s) | 308, 710, 886, 940, 943 |
| Bme1390I | CCNGG | 1 cut(s) | 1056 |
| Bme18I | GGWCC | 1 cut(s) | 455 |
| BmeT110I | CYCGRG | 1 cut(s) | 587 |
| BmgBI | CACGTC | 1 cut(s) | 17 |
| BmgT120I | GGNCC | 1 cut(s) | 455 |
| BmiI | GGNNCC | 2 cut(s) | 594, 904 |
| BmrFI | CCNGG | 1 cut(s) | 1056 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 712 |
| Bsa29I | ATCGAT | 1 cut(s) | 1024 |
| BsaAI | YACGTR | 2 cut(s) | 419, 758 |
| BsaBI | GATNNNNATC | 2 cut(s) | 510, 907 |
| BsaJI | CCNNGG | 4 cut(s) | 209, 301, 611, 1035 |
| BsaWI | WCCGGW | 2 cut(s) | 466, 899 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 795, 825 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 200, 800, 1328 |
| Bse1I | ACTGG | 2 cut(s) | 314, 945 |
| Bse3DI | GCAATG | 1 cut(s) | 1075 |
| Bse8I | GATNNNNATC | 2 cut(s) | 510, 907 |
| BseAI | TCCGGA | 2 cut(s) | 466, 899 |
| BseBI | CCWGG | 1 cut(s) | 1056 |
| BseCI | ATCGAT | 1 cut(s) | 1024 |
| BseDI | CCNNGG | 4 cut(s) | 209, 301, 611, 1035 |
| BseGI | GGATG | 3 cut(s) | 272, 674, 1175 |
| BseJI | GATNNNNATC | 2 cut(s) | 510, 907 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 200, 800, 1328 |
| BseMI | GCAATG | 1 cut(s) | 1075 |
| BseMII | CTCAG | 3 cut(s) | 127, 238, 1284 |
| BseNI | ACTGG | 2 cut(s) | 314, 945 |
| BseRI | GAGGAG | 4 cut(s) | 819, 822, 1250, 1347 |
| BseSI | GKGCMC | 1 cut(s) | 1118 |
| BseXI | GCAGC | 4 cut(s) | 293, 695, 928, 950 |
| BshFI | GGCC | 1 cut(s) | 648 |
| BshVI | ATCGAT | 1 cut(s) | 1024 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1118 |
| BsiHKCI | CYCGRG | 1 cut(s) | 587 |
| BsiSI | CCGG | 3 cut(s) | 435, 467, 900 |
| BslFI | GGGAC | 1 cut(s) | 325 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 200, 800, 1328 |
| BsmAI | GTCTC | 1 cut(s) | 131 |
| BsmFI | GGGAC | 1 cut(s) | 325 |
| BsmI | GAATGC | 1 cut(s) | 357 |
| BsnI | GGCC | 1 cut(s) | 648 |
| BsoBI | CYCGRG | 1 cut(s) | 587 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1118 |
| Bsp13I | TCCGGA | 2 cut(s) | 466, 899 |
| Bsp143I | GATC | 7 cut(s) | 172, 511, 574, 902, 928, 1025, 1135 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 712 |
| Bsp19I | CCATGG | 2 cut(s) | 209, 611 |
| BspACI | CCGC | 1 cut(s) | 885 |
| BspANI | GGCC | 1 cut(s) | 648 |
| BspCNI | CTCAG | 3 cut(s) | 126, 237, 1285 |
| BspDI | ATCGAT | 1 cut(s) | 1024 |
| BspEI | TCCGGA | 2 cut(s) | 466, 899 |
| BspLI | GGNNCC | 2 cut(s) | 594, 904 |
| BspMAI | CTGCAG | 2 cut(s) | 940, 1083 |
| BspMI | ACCTGC | 1 cut(s) | 466 |
| BspPI | GGATC | 2 cut(s) | 897, 910 |
| BsrDI | GCAATG | 1 cut(s) | 1075 |
| BsrI | ACTGG | 2 cut(s) | 314, 945 |
| BssECI | CCNNGG | 4 cut(s) | 209, 301, 611, 1035 |
| BssMI | GATC | 7 cut(s) | 172, 511, 574, 902, 928, 1025, 1135 |
| BssSI | CACGAG | 1 cut(s) | 639 |
| BssT1I | CCWWGG | 4 cut(s) | 209, 301, 611, 1035 |
| Bst2BI | CACGAG | 1 cut(s) | 639 |
| Bst2UI | CCWGG | 1 cut(s) | 1056 |
| Bst4CI | ACNGT | 2 cut(s) | 200, 339 |
| Bst6I | CTCTTC | 1 cut(s) | 1393 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1065 |
| BstBAI | YACGTR | 2 cut(s) | 419, 758 |
| BstC8I | GCNNGC | 1 cut(s) | 543 |
| BstDEI | CTNAG | 4 cut(s) | 113, 224, 712, 1293 |
| BstDSI | CCRYGG | 2 cut(s) | 209, 611 |
| BstF5I | GGATG | 3 cut(s) | 272, 674, 1175 |
| BstHHI | GCGC | 1 cut(s) | 1015 |
| BstKTI | GATC | 7 cut(s) | 175, 514, 577, 905, 931, 1028, 1138 |
| BstMAI | GTCTC | 1 cut(s) | 131 |
| BstMBI | GATC | 7 cut(s) | 172, 511, 574, 902, 928, 1025, 1135 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 732, 1065 |
| BstNI | CCWGG | 1 cut(s) | 1056 |
| BstNSI | RCATGY | 1 cut(s) | 859 |
| BstSCI | CCNGG | 1 cut(s) | 1054 |
| BstSFI | CTRYAG | 3 cut(s) | 936, 1048, 1079 |
| BstSLI | GKGCMC | 1 cut(s) | 1118 |
| BstV1I | GCAGC | 4 cut(s) | 293, 695, 928, 950 |
| BstX2I | RGATCY | 1 cut(s) | 902 |
| BstYI | RGATCY | 1 cut(s) | 902 |
| Bsu15I | ATCGAT | 1 cut(s) | 1024 |
| BsuRI | GGCC | 1 cut(s) | 648 |
| BsuTUI | ATCGAT | 1 cut(s) | 1024 |
| BtgI | CCRYGG | 2 cut(s) | 209, 611 |
| BtrI | CACGTC | 1 cut(s) | 17 |
| BtsCI | GGATG | 3 cut(s) | 272, 674, 1175 |
| BtsI | GCAGTG | 2 cut(s) | 723, 1116 |
| BtsIMutI | CAGTG | 4 cut(s) | 321, 723, 773, 1116 |
| BveI | ACCTGC | 1 cut(s) | 466 |
| Cac8I | GCNNGC | 1 cut(s) | 543 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1166 |
| CfoI | GCGC | 1 cut(s) | 1015 |
| Cfr13I | GGNCC | 1 cut(s) | 455 |
| ClaI | ATCGAT | 1 cut(s) | 1024 |
| Csp6I | GTAC | 5 cut(s) | 353, 408, 556, 755, 1242 |
| CviAII | CATG | 7 cut(s) | 210, 376, 568, 612, 800, 856, 1328 |
| CviQI | GTAC | 5 cut(s) | 353, 408, 556, 755, 1242 |
| DdeI | CTNAG | 4 cut(s) | 113, 224, 712, 1293 |
| DpnI | GATC | 7 cut(s) | 174, 513, 576, 904, 930, 1027, 1137 |
| DpnII | GATC | 7 cut(s) | 172, 511, 574, 902, 928, 1025, 1135 |
| EaeI | YGGCCR | 1 cut(s) | 646 |
| Eam1104I | CTCTTC | 1 cut(s) | 1393 |
| EarI | CTCTTC | 1 cut(s) | 1393 |
| Eco130I | CCWWGG | 4 cut(s) | 209, 301, 611, 1035 |
| Eco47I | GGWCC | 1 cut(s) | 455 |
| Eco72I | CACGTG | 1 cut(s) | 419 |
| Eco88I | CYCGRG | 1 cut(s) | 587 |
| EcoO109I | RGGNCCY | 1 cut(s) | 455 |
| EcoRII | CCWGG | 1 cut(s) | 1054 |
| EcoT14I | CCWWGG | 4 cut(s) | 209, 301, 611, 1035 |
| EcoT22I | ATGCAT | 1 cut(s) | 377 |
| ErhI | CCWWGG | 4 cut(s) | 209, 301, 611, 1035 |
| FaeI | CATG | 7 cut(s) | 213, 379, 571, 615, 803, 859, 1331 |
| FaqI | GGGAC | 1 cut(s) | 325 |
| FatI | CATG | 7 cut(s) | 209, 375, 567, 611, 799, 855, 1327 |
| FbaI | TGATCA | 1 cut(s) | 172 |
| FblI | GTMKAC | 2 cut(s) | 400, 1051 |
| Fnu4HI | GCNGC | 5 cut(s) | 307, 709, 885, 939, 942 |
| FokI | GGATG | 3 cut(s) | 279, 681, 1182 |
| Fsp4HI | GCNGC | 5 cut(s) | 307, 709, 885, 939, 942 |
| FspBI | CTAG | 4 cut(s) | 296, 698, 879, 1152 |
| FspI | TGCGCA | 1 cut(s) | 1014 |
| GlaI | GCGC | 1 cut(s) | 1014 |
| GluI | GCNGC | 5 cut(s) | 307, 709, 885, 939, 942 |
| HaeIII | GGCC | 1 cut(s) | 648 |
| HapII | CCGG | 3 cut(s) | 435, 467, 900 |
| HhaI | GCGC | 1 cut(s) | 1015 |
| Hin1II | CATG | 7 cut(s) | 213, 379, 571, 615, 803, 859, 1331 |
| Hin6I | GCGC | 1 cut(s) | 1013 |
| HinP1I | GCGC | 1 cut(s) | 1013 |
| HindIII | AAGCTT | 2 cut(s) | 79, 481 |
| HinfI | GANTC | 1 cut(s) | 1385 |
| HpaII | CCGG | 3 cut(s) | 435, 467, 900 |
| HphI | GGTGA | 1 cut(s) | 1103 |
| Hpy166II | GTNNAC | 4 cut(s) | 245, 401, 1052, 1116 |
| Hpy188I | TCNGA | 7 cut(s) | 116, 227, 518, 913, 1140, 1265, 1384 |
| Hpy188III | TCNNGA | 7 cut(s) | 65, 134, 467, 536, 851, 900, 1395 |
| Hpy8I | GTNNAC | 4 cut(s) | 245, 401, 1052, 1116 |
| HpyAV | CCTTC | 5 cut(s) | 118, 323, 520, 698, 725 |
| HpyCH4III | ACNGT | 2 cut(s) | 200, 339 |
| HpyCH4IV | ACGT | 3 cut(s) | 16, 418, 757 |
| HpyCH4V | TGCA | 8 cut(s) | 87, 375, 567, 603, 938, 1068, 1081, 1116 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 732, 1065 |
| HpyF3I | CTNAG | 4 cut(s) | 113, 224, 712, 1293 |
| HpySE526I | ACGT | 3 cut(s) | 16, 418, 757 |
| Hsp92II | CATG | 7 cut(s) | 213, 379, 571, 615, 803, 859, 1331 |
| HspAI | GCGC | 1 cut(s) | 1013 |
| Kpn2I | TCCGGA | 2 cut(s) | 466, 899 |
| Ksp22I | TGATCA | 1 cut(s) | 172 |
| Kzo9I | GATC | 7 cut(s) | 172, 511, 574, 902, 928, 1025, 1135 |
| LmnI | GCTCC | 2 cut(s) | 842, 1237 |
| Lsp1109I | GCAGC | 4 cut(s) | 293, 695, 928, 950 |
| MaeI | CTAG | 4 cut(s) | 296, 698, 879, 1152 |
| MaeII | ACGT | 3 cut(s) | 16, 418, 757 |
| MaeIII | GTNAC | 4 cut(s) | 97, 255, 499, 1072 |
| MalI | GATC | 7 cut(s) | 174, 513, 576, 904, 930, 1027, 1137 |
| MboI | GATC | 7 cut(s) | 172, 511, 574, 902, 928, 1025, 1135 |
| MboII | GAAGA | 6 cut(s) | 3, 353, 423, 478, 1288, 1380 |
| MflI | RGATCY | 1 cut(s) | 902 |
| MhlI | GDGCHC | 1 cut(s) | 1118 |
| MlyI | GAGTC | 1 cut(s) | 1379 |
| Mph1103I | ATGCAT | 1 cut(s) | 377 |
| MroI | TCCGGA | 2 cut(s) | 466, 899 |
| MseI | TTAA | 4 cut(s) | 491, 659, 978, 1281 |
| MslI | CAYNNNNRTG | 1 cut(s) | 380 |
| MspA1I | CMGCKG | 3 cut(s) | 143, 545, 941 |
| MspI | CCGG | 3 cut(s) | 435, 467, 900 |
| MspR9I | CCNGG | 1 cut(s) | 1056 |
| Mva1269I | GAATGC | 1 cut(s) | 357 |
| MvaI | CCWGG | 1 cut(s) | 1056 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 732, 1065 |
| NcoI | CCATGG | 2 cut(s) | 209, 611 |
| NdeII | GATC | 7 cut(s) | 172, 511, 574, 902, 928, 1025, 1135 |
| NlaIII | CATG | 7 cut(s) | 213, 379, 571, 615, 803, 859, 1331 |
| NlaIV | GGNNCC | 2 cut(s) | 594, 904 |
| NmuCI | GTSAC | 2 cut(s) | 97, 1072 |
| NsbI | TGCGCA | 1 cut(s) | 1014 |
| NsiI | ATGCAT | 1 cut(s) | 377 |
| NspI | RCATGY | 1 cut(s) | 859 |
| PaeR7I | CTCGAG | 1 cut(s) | 587 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 646 |
| PctI | GAATGC | 1 cut(s) | 357 |
| PkrI | GCNGC | 5 cut(s) | 308, 710, 886, 940, 943 |
| PleI | GAGTC | 1 cut(s) | 1379 |
| PmaCI | CACGTG | 1 cut(s) | 419 |
| PmlI | CACGTG | 1 cut(s) | 419 |
| PpsI | GAGTC | 1 cut(s) | 1379 |
| Ppu21I | YACGTR | 2 cut(s) | 419, 758 |
| PpuMI | RGGWCCY | 1 cut(s) | 455 |
| PshBI | ATTAAT | 1 cut(s) | 1281 |
| Psp5II | RGGWCCY | 1 cut(s) | 455 |
| Psp6I | CCWGG | 1 cut(s) | 1054 |
| PspCI | CACGTG | 1 cut(s) | 419 |
| PspGI | CCWGG | 1 cut(s) | 1054 |
| PspN4I | GGNNCC | 2 cut(s) | 594, 904 |
| PspPI | GGNCC | 1 cut(s) | 455 |
| PspPPI | RGGWCCY | 1 cut(s) | 455 |
| PspXI | VCTCGAGB | 1 cut(s) | 587 |
| PstI | CTGCAG | 2 cut(s) | 940, 1083 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1166 |
| PsuI | RGATCY | 1 cut(s) | 902 |
| PvuII | CAGCTG | 3 cut(s) | 143, 545, 941 |
| RsaI | GTAC | 5 cut(s) | 354, 409, 557, 756, 1243 |
| RsaNI | GTAC | 5 cut(s) | 353, 408, 556, 755, 1242 |
| RseI | CAYNNNNRTG | 1 cut(s) | 380 |
| SaqAI | TTAA | 4 cut(s) | 491, 659, 978, 1281 |
| SatI | GCNGC | 5 cut(s) | 307, 709, 885, 939, 942 |
| Sau3AI | GATC | 7 cut(s) | 172, 511, 574, 902, 928, 1025, 1135 |
| Sau96I | GGNCC | 1 cut(s) | 455 |
| SchI | GAGTC | 1 cut(s) | 1379 |
| ScrFI | CCNGG | 1 cut(s) | 1056 |
| SduI | GDGCHC | 1 cut(s) | 1118 |
| SfcI | CTRYAG | 3 cut(s) | 936, 1048, 1079 |
| Sfr274I | CTCGAG | 1 cut(s) | 587 |
| SinI | GGWCC | 1 cut(s) | 455 |
| SlaI | CTCGAG | 1 cut(s) | 587 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 380 |
| SmlI | CTYRAG | 1 cut(s) | 587 |
| SmoI | CTYRAG | 1 cut(s) | 587 |
| SsiI | CCGC | 1 cut(s) | 885 |
| SspMI | CTAG | 4 cut(s) | 296, 698, 879, 1152 |
| StyD4I | CCNGG | 1 cut(s) | 1054 |
| StyI | CCWWGG | 4 cut(s) | 209, 301, 611, 1035 |
| TaaI | ACNGT | 2 cut(s) | 200, 339 |
| TaiI | ACGT | 3 cut(s) | 19, 421, 760 |
| TaqI | TCGA | 4 cut(s) | 219, 588, 1024, 1224 |
| TatI | WGTACW | 1 cut(s) | 555 |
| TauI | GCSGC | 1 cut(s) | 887 |
| Tru1I | TTAA | 4 cut(s) | 491, 659, 978, 1281 |
| Tru9I | TTAA | 4 cut(s) | 491, 659, 978, 1281 |
| TscAI | CASTG | 4 cut(s) | 321, 723, 773, 1123 |
| TseFI | GTSAC | 2 cut(s) | 97, 1072 |
| TseI | GCWGC | 4 cut(s) | 306, 708, 938, 941 |
| Tsp45I | GTSAC | 2 cut(s) | 97, 1072 |
| TspDTI | ATGAA | 7 cut(s) | 342, 353, 717, 744, 788, 981, 1316 |
| TspRI | CASTG | 4 cut(s) | 321, 723, 773, 1123 |
| VneI | GTGCAC | 1 cut(s) | 1114 |
| VpaK11BI | GGWCC | 1 cut(s) | 455 |
| VspI | ATTAAT | 1 cut(s) | 1281 |
| XapI | RAATTY | 4 cut(s) | 59, 71, 1155, 1374 |
| XceI | RCATGY | 1 cut(s) | 859 |
| XhoI | CTCGAG | 1 cut(s) | 587 |
| XmiI | GTMKAC | 2 cut(s) | 400, 1051 |
| XspI | CTAG | 4 cut(s) | 296, 698, 879, 1152 |
| Zsp2I | ATGCAT | 1 cut(s) | 377 |