Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8485709.1

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Reverse (-)

1519 .. 2282

Gene Structure 764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8485709.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atggaaatagattaccctattcatggaggaggaattgatgtaacaccaaaagggaaaaagccaggagctaatcaagatgtgcctcctgcccacttagaagctagagccaattcagtttcttctggatcctcagctgatgaagaccaaaataatcttctcacaactactagtttcaaatctgacaagccaatttttatgctcaatatgacagctgcatacatgcgcctctctcttgcgcacataagtgcatcatttgctgctgaacatctatgcaaaccaggcatttcttgcaatgtgatcctacagaattcagaggagagagtttggactgctcagtgttttgtcagtgaacacagcgatcaccgagtgcaagcaagtctctcagggcctggttggaaagcatttaagcaggacaatcatctggtattaggtgatgtttgtgtttttgagttgatagatgaacgtaaactaaaagtttccatattccaaggtaaagtgaagattattaggcaaaatgaggaaaatgaagccaggcacatttctcagtttgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

184

Amino Acids

20.33

Weight (kDa)

6.05

Isoelectric Point (pI)

30.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	237
AclWI	GGATC	3 cut(s)	120, 133, 292
AcsI	RAATTY	1 cut(s)	307
AdeI	CACNNNGTG	1 cut(s)	367
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	175
AhlI	ACTAGT	1 cut(s)	167
AjnI	CCWGG	4 cut(s)	61, 277, 388, 530
AjuI	GAANNNNNNNTTGG	2 cut(s)	138, 170
AleI	CACNNNNGTG	1 cut(s)	243
AluBI	AGCT	4 cut(s)	68, 101, 134, 212
AluI	AGCT	4 cut(s)	68, 101, 134, 212
Alw26I	GTCTC	1 cut(s)	383
AlwI	GGATC	3 cut(s)	120, 133, 292
AlwNI	CAGNNNCTG	1 cut(s)	389
AoxI	GGCC	1 cut(s)	386
ApeKI	GCWGC	2 cut(s)	212, 257
ApoI	RAATTY	1 cut(s)	307
AspLEI	GCGC	2 cut(s)	225, 238
AspS9I	GGNCC	1 cut(s)	386
AsuHPI	GGTGA	2 cut(s)	353, 443
BamHI	GGATCC	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	147
BbvCI	CCTCAGC	1 cut(s)	130
BbvI	GCAGC	2 cut(s)	199, 244
BciT130I	CCWGG	4 cut(s)	63, 279, 390, 532
BcoDI	GTCTC	1 cut(s)	383
BcuI	ACTAGT	1 cut(s)	167
BfaI	CTAG	2 cut(s)	102, 168
BfmI	CTRYAG	1 cut(s)	302
BisI	GCNGC	2 cut(s)	213, 258
BlsI	GCNGC	2 cut(s)	214, 259
Bme1390I	CCNGG	4 cut(s)	63, 279, 390, 532
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	4 cut(s)	63, 279, 390, 532
BmsI	GCATC	1 cut(s)	257
BpiI	GAAGAC	1 cut(s)	147
Bpu10I	CCTNAGC	1 cut(s)	130
BsaJI	CCNNGG	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse3DI	GCAATG	1 cut(s)	298
BseBI	CCWGG	4 cut(s)	63, 279, 390, 532
BseDI	CCNNGG	1 cut(s)	487
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMI	GCAATG	1 cut(s)	298
BseMII	CTCAG	3 cut(s)	144, 347, 396
BseRI	GAGGAG	2 cut(s)	42, 329
BseXI	GCAGC	2 cut(s)	199, 244
BshFI	GGCC	1 cut(s)	388
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	383
BsnI	GGCC	1 cut(s)	388
Bsp143I	GATC	3 cut(s)	125, 297, 358
BspANI	GGCC	1 cut(s)	388
BspCNI	CTCAG	3 cut(s)	143, 346, 395
BspLI	GGNNCC	1 cut(s)	127
BspPI	GGATC	3 cut(s)	120, 133, 292
BsrDI	GCAATG	1 cut(s)	298
BssECI	CCNNGG	1 cut(s)	487
BssMI	GATC	3 cut(s)	125, 297, 358
BssT1I	CCWWGG	1 cut(s)	487
Bst2UI	CCWGG	4 cut(s)	63, 279, 390, 532
BstAPI	GCANNNNNTGC	2 cut(s)	254, 288
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	5 cut(s)	94, 130, 333, 382, 543
BstHHI	GCGC	2 cut(s)	225, 238
BstKTI	GATC	3 cut(s)	128, 300, 361
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	3 cut(s)	125, 297, 358
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 279, 288
BstNI	CCWGG	4 cut(s)	63, 279, 390, 532
BstNSI	RCATGY	1 cut(s)	223
BstSCI	CCNGG	4 cut(s)	61, 277, 388, 530
BstSFI	CTRYAG	1 cut(s)	302
BstV1I	GCAGC	2 cut(s)	199, 244
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
BsuRI	GGCC	1 cut(s)	388
BtsIMutI	CAGTG	2 cut(s)	341, 352
Cac8I	GCNNGC	1 cut(s)	372
CaiI	CAGNNNCTG	1 cut(s)	389
CfoI	GCGC	2 cut(s)	225, 238
Cfr13I	GGNCC	1 cut(s)	386
CviAII	CATG	2 cut(s)	23, 220
CviJI	RGCY	9 cut(s)	61, 68, 101, 107, 134, 187, 212, 388, 530
CviKI_1	RGCY	9 cut(s)	61, 68, 101, 107, 134, 187, 212, 388, 530
DdeI	CTNAG	5 cut(s)	94, 130, 333, 382, 543
DpnI	GATC	3 cut(s)	127, 299, 360
DpnII	GATC	3 cut(s)	125, 297, 358
DraIII	CACNNNGTG	1 cut(s)	367
Eco130I	CCWWGG	1 cut(s)	487
EcoO109I	RGGNCCY	1 cut(s)	386
EcoRI	GAATTC	1 cut(s)	307
EcoRII	CCWGG	4 cut(s)	61, 277, 388, 530
EcoT14I	CCWWGG	1 cut(s)	487
ErhI	CCWWGG	1 cut(s)	487
FaeI	CATG	2 cut(s)	26, 223
FaiI	YATR	8 cut(s)	24, 197, 206, 217, 221, 242, 271, 482
FatI	CATG	2 cut(s)	22, 219
Fnu4HI	GCNGC	2 cut(s)	213, 258
Fsp4HI	GCNGC	2 cut(s)	213, 258
FspBI	CTAG	2 cut(s)	102, 168
FspI	TGCGCA	1 cut(s)	237
GlaI	GCGC	2 cut(s)	224, 237
GluI	GCNGC	2 cut(s)	213, 258
HaeIII	GGCC	1 cut(s)	388
HhaI	GCGC	2 cut(s)	225, 238
Hin1II	CATG	2 cut(s)	26, 223
Hin6I	GCGC	2 cut(s)	223, 236
HinP1I	GCGC	2 cut(s)	223, 236
HphI	GGTGA	2 cut(s)	353, 443
Hpy166II	GTNNAC	2 cut(s)	350, 467
Hpy188I	TCNGA	2 cut(s)	181, 313
Hpy188III	TCNNGA	2 cut(s)	74, 123
Hpy8I	GTNNAC	2 cut(s)	350, 467
HpyCH4IV	ACGT	1 cut(s)	463
HpyCH4V	TGCA	5 cut(s)	215, 248, 273, 291, 370
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 279, 288
HpyF3I	CTNAG	5 cut(s)	94, 130, 333, 382, 543
HpySE526I	ACGT	1 cut(s)	463
Hsp92II	CATG	2 cut(s)	26, 223
HspAI	GCGC	2 cut(s)	223, 236
Kzo9I	GATC	3 cut(s)	125, 297, 358
LmnI	GCTCC	1 cut(s)	65
Lsp1109I	GCAGC	2 cut(s)	199, 244
LweI	GCATC	1 cut(s)	257
MaeI	CTAG	2 cut(s)	102, 168
MaeII	ACGT	1 cut(s)	463
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	3 cut(s)	127, 299, 360
MboI	GATC	3 cut(s)	125, 297, 358
MboII	GAAGA	4 cut(s)	111, 146, 152, 511
MflI	RGATCY	1 cut(s)	125
MluCI	AATT	4 cut(s)	33, 109, 189, 307
MmeI	TCCRAC	1 cut(s)	374
MnlI	CCTC	7 cut(s)	20, 23, 93, 139, 236, 307, 511
MseI	TTAA	1 cut(s)	405
MslI	CAYNNNNRTG	1 cut(s)	243
MspA1I	CMGCKG	2 cut(s)	134, 212
MspR9I	CCNGG	4 cut(s)	63, 279, 390, 532
MvaI	CCWGG	4 cut(s)	63, 279, 390, 532
MwoI	GCNNNNNNNGC	3 cut(s)	254, 279, 288
NdeII	GATC	3 cut(s)	125, 297, 358
NlaIII	CATG	2 cut(s)	26, 223
NlaIV	GGNNCC	1 cut(s)	127
NsbI	TGCGCA	1 cut(s)	237
NspI	RCATGY	1 cut(s)	223
OliI	CACNNNNGTG	1 cut(s)	243
PkrI	GCNGC	2 cut(s)	214, 259
Psp6I	CCWGG	4 cut(s)	61, 277, 388, 530
PspGI	CCWGG	4 cut(s)	61, 277, 388, 530
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	386
PstNI	CAGNNNCTG	1 cut(s)	389
PsuI	RGATCY	1 cut(s)	125
PvuII	CAGCTG	2 cut(s)	134, 212
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	2 cut(s)	213, 258
Sau3AI	GATC	3 cut(s)	125, 297, 358
Sau96I	GGNCC	1 cut(s)	386
ScrFI	CCNGG	4 cut(s)	63, 279, 390, 532
SetI	ASST	7 cut(s)	70, 103, 136, 214, 433, 466, 493
SfaNI	GCATC	1 cut(s)	257
SfcI	CTRYAG	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	243
SpeI	ACTAGT	1 cut(s)	167
Sse9I	AATT	4 cut(s)	33, 109, 189, 307
SspMI	CTAG	2 cut(s)	102, 168
StyD4I	CCNGG	4 cut(s)	61, 277, 388, 530
StyI	CCWWGG	1 cut(s)	487
TaiI	ACGT	1 cut(s)	466
TasI	AATT	4 cut(s)	33, 109, 189, 307
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	2 cut(s)	341, 352
TseI	GCWGC	2 cut(s)	212, 257
TspDTI	ATGAA	4 cut(s)	11, 153, 474, 540
TspRI	CASTG	2 cut(s)	341, 352
XapI	RAATTY	1 cut(s)	307
XceI	RCATGY	1 cut(s)	223
XspI	CTAG	2 cut(s)	102, 168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.