Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030974.1

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Forward (+)

15333 .. 17072

Gene Structure 1740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030974.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atggctacatttccacgtcctatggcttctccaagcttttgtctgaagattgtcactgctaacgatctccgagatggcaaggaacttcctgagacagccgtaaagaagtatggacattgtatggcagagtccatattcctcaaggctccaaattgtgggacatggtggccaattgaagtgaaaaggtcagttcgtggtggccggatgtggttacacaagggatggcaagactttgcaaacttttactcgctggaccagggctactttgcattgttcacctatgaaggcgaacattcccatttcctagtacgcctttttcactggaatgatatggaaatagactaccctattcatggaggaggagtgccaaaaaggaaaagaacaggagctaatcgaaacacccctcctgcctatttagaggctagaaccagtccaacttcctctggatcctcgactgatgaaaaccaaaatgatctttccacagctactagtttcaaatctgacaagccacttcttatgctcagaatgacagctacatatatacgctgctctggcgcctatattagtccatcttttgccaaggaacatgtctgcagaccaggcacttcatgcaatgtgaccctacaaatttcaaaggagaaagtttggactgctcaatgcactgttggtgaaaacagtgagcacaaactatatgcaagagtttcaggtgctggttggaaggcatttaaggaggacaatcatctggaagtacatgatgtctgtgtgtttgagttgattgaggagcgtacattcaaagtttccataatccgagctaaagtgaagatcaataaggaagatgaggaaagtgaagacaagctcatgttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

288

Amino Acids

32.73

Weight (kDa)

8.34

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	554
AccB7I	CCANNNNNTGG	1 cut(s)	155
AclWI	GGATC	2 cut(s)	441, 454
AcoI	YGGCCR	2 cut(s)	167, 199
AcsI	RAATTY	1 cut(s)	627
AcuI	CTGAAG	1 cut(s)	65
AcyI	GRCGYC	1 cut(s)	555
AfaI	GTAC	3 cut(s)	309, 750, 787
AfiI	CCNNNNNNNGG	2 cut(s)	155, 353
AflIII	ACRYGT	1 cut(s)	586
AgsI	TTSAA	4 cut(s)	176, 496, 633, 793
AhlI	ACTAGT	1 cut(s)	488
AjiI	CACGTC	1 cut(s)	17
AjnI	CCWGG	2 cut(s)	255, 598
AluBI	AGCT	6 cut(s)	36, 389, 485, 533, 812, 856
AluI	AGCT	6 cut(s)	36, 389, 485, 533, 812, 856
Alw21I	GWGCWC	1 cut(s)	684
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	2 cut(s)	441, 454
AlwNI	CAGNNNCTG	1 cut(s)	710
AoxI	GGCC	2 cut(s)	167, 199
ApeKI	GCWGC	1 cut(s)	546
ApoI	RAATTY	1 cut(s)	627
AspLEI	GCGC	1 cut(s)	557
AspS9I	GGNCC	1 cut(s)	253
AsuHPI	GGTGA	2 cut(s)	268, 680
AvaII	GGWCC	1 cut(s)	253
BalI	TGGCCA	1 cut(s)	169
BamHI	GGATCC	1 cut(s)	446
BanI	GGYRCC	1 cut(s)	554
BbsI	GAAGAC	1 cut(s)	855
Bbv12I	GWGCWC	1 cut(s)	684
BbvI	GCAGC	1 cut(s)	533
BccI	CCATC	3 cut(s)	68, 216, 577
BceAI	ACGGC	1 cut(s)	83
BciT130I	CCWGG	2 cut(s)	257, 600
BcoDI	GTCTC	1 cut(s)	86
BcuI	ACTAGT	1 cut(s)	488
BfaI	CTAG	3 cut(s)	305, 423, 489
BfmI	CTRYAG	1 cut(s)	592
BfoI	RGCGCY	1 cut(s)	558
BisI	GCNGC	1 cut(s)	547
BlsI	GCNGC	1 cut(s)	548
Bme1390I	CCNGG	2 cut(s)	257, 600
Bme18I	GGWCC	1 cut(s)	253
BmgBI	CACGTC	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	3 cut(s)	147, 448, 556
BmrFI	CCNGG	2 cut(s)	257, 600
BpiI	GAAGAC	1 cut(s)	855
BpuEI	CTTGAG	1 cut(s)	125
BsaHI	GRCGYC	1 cut(s)	555
BsaJI	CCNNGG	2 cut(s)	256, 579
BsaXI	ACNNNNNCTCC	2 cut(s)	348, 378
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 353
Bse1I	ACTGG	2 cut(s)	326, 429
Bse3DI	GCAATG	1 cut(s)	619
BseBI	CCWGG	2 cut(s)	257, 600
BseDI	CCNNGG	2 cut(s)	256, 579
BseGI	GGATG	2 cut(s)	210, 227
BseLI	CCNNNNNNNGG	2 cut(s)	155, 353
BseMI	GCAATG	1 cut(s)	619
BseMII	CTCAG	2 cut(s)	81, 535
BseNI	ACTGG	2 cut(s)	326, 429
BseRI	GAGGAG	3 cut(s)	372, 375, 794
BseXI	GCAGC	1 cut(s)	533
BshFI	GGCC	2 cut(s)	169, 201
BshNI	GGYRCC	1 cut(s)	554
BsiHKAI	GWGCWC	1 cut(s)	684
BsiSI	CCGG	1 cut(s)	202
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	2 cut(s)	155, 353
BsmAI	GTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	172
BsnI	GGCC	2 cut(s)	169, 201
Bsp1286I	GDGCHC	1 cut(s)	684
Bsp143I	GATC	4 cut(s)	64, 446, 472, 822
BspANI	GGCC	2 cut(s)	169, 201
BspCNI	CTCAG	2 cut(s)	82, 534
BspLI	GGNNCC	3 cut(s)	147, 448, 556
BspMAI	CTGCAG	1 cut(s)	596
BspPI	GGATC	2 cut(s)	441, 454
BspT107I	GGYRCC	1 cut(s)	554
BsrDI	GCAATG	1 cut(s)	619
BsrI	ACTGG	2 cut(s)	326, 429
BssECI	CCNNGG	2 cut(s)	256, 579
BssMI	GATC	4 cut(s)	64, 446, 472, 822
BssNI	GRCGYC	1 cut(s)	555
BssT1I	CCWWGG	1 cut(s)	579
Bst2UI	CCWGG	2 cut(s)	257, 600
Bst4CI	ACNGT	2 cut(s)	664, 677
BstACI	GRCGYC	1 cut(s)	555
BstAPI	GCANNNNNTGC	1 cut(s)	609
BstDEI	CTNAG	2 cut(s)	90, 521
BstF5I	GGATG	2 cut(s)	210, 227
BstH2I	RGCGCY	1 cut(s)	558
BstHHI	GCGC	1 cut(s)	557
BstKTI	GATC	4 cut(s)	67, 449, 475, 825
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	4 cut(s)	64, 446, 472, 822
BstMWI	GCNNNNNNNGC	3 cut(s)	552, 600, 609
BstNI	CCWGG	2 cut(s)	257, 600
BstNSI	RCATGY	1 cut(s)	590
BstSCI	CCNGG	2 cut(s)	255, 598
BstSFI	CTRYAG	1 cut(s)	592
BstV1I	GCAGC	1 cut(s)	533
BstV2I	GAAGAC	1 cut(s)	855
BstX2I	RGATCY	1 cut(s)	446
BstYI	RGATCY	1 cut(s)	446
BsuRI	GGCC	2 cut(s)	169, 201
BtrI	CACGTC	1 cut(s)	17
BtsCI	GGATG	2 cut(s)	210, 227
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	4 cut(s)	54, 319, 660, 682
CaiI	CAGNNNCTG	1 cut(s)	710
CfoI	GCGC	1 cut(s)	557
Cfr13I	GGNCC	1 cut(s)	253
Csp6I	GTAC	3 cut(s)	308, 749, 786
CviAII	CATG	6 cut(s)	162, 353, 587, 609, 752, 859
CviQI	GTAC	3 cut(s)	308, 749, 786
DdeI	CTNAG	2 cut(s)	90, 521
DinI	GGCGCC	1 cut(s)	556
DpnI	GATC	4 cut(s)	66, 448, 474, 824
DpnII	GATC	4 cut(s)	64, 446, 472, 822
EaeI	YGGCCR	2 cut(s)	167, 199
Eco130I	CCWWGG	1 cut(s)	579
Eco47I	GGWCC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	65
EcoRII	CCWGG	2 cut(s)	255, 598
EcoT14I	CCWWGG	1 cut(s)	579
EgeI	GGCGCC	1 cut(s)	556
EheI	GGCGCC	1 cut(s)	556
ErhI	CCWWGG	1 cut(s)	579
FaeI	CATG	6 cut(s)	165, 356, 590, 612, 755, 862
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	6 cut(s)	161, 352, 586, 608, 751, 858
Fnu4HI	GCNGC	1 cut(s)	547
FokI	GGATG	2 cut(s)	217, 234
Fsp4HI	GCNGC	1 cut(s)	547
FspBI	CTAG	3 cut(s)	305, 423, 489
GlaI	GCGC	1 cut(s)	556
GluI	GCNGC	1 cut(s)	547
HaeII	RGCGCY	1 cut(s)	558
HaeIII	GGCC	2 cut(s)	169, 201
HapII	CCGG	1 cut(s)	202
HhaI	GCGC	1 cut(s)	557
Hin1I	GRCGYC	1 cut(s)	555
Hin1II	CATG	6 cut(s)	165, 356, 590, 612, 755, 862
Hin6I	GCGC	1 cut(s)	555
HinP1I	GCGC	1 cut(s)	555
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	1 cut(s)	202
HphI	GGTGA	2 cut(s)	268, 680
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188I	TCNGA	5 cut(s)	45, 71, 502, 524, 809
Hpy188III	TCNNGA	3 cut(s)	89, 444, 743
Hpy8I	GTNNAC	1 cut(s)	276
HpyAV	CCTTC	2 cut(s)	278, 712
HpyCH4III	ACNGT	2 cut(s)	664, 677
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	6 cut(s)	236, 269, 594, 612, 660, 695
HpyF10VI	GCNNNNNNNGC	3 cut(s)	552, 600, 609
HpyF3I	CTNAG	2 cut(s)	90, 521
HpySE526I	ACGT	1 cut(s)	16
Hsp92I	GRCGYC	1 cut(s)	555
Hsp92II	CATG	6 cut(s)	165, 356, 590, 612, 755, 862
HspAI	GCGC	1 cut(s)	555
KasI	GGCGCC	1 cut(s)	554
Kzo9I	GATC	4 cut(s)	64, 446, 472, 822
LmnI	GCTCC	3 cut(s)	151, 386, 781
Lsp1109I	GCAGC	1 cut(s)	533
MaeI	CTAG	3 cut(s)	305, 423, 489
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	3 cut(s)	52, 210, 616
MalI	GATC	4 cut(s)	66, 448, 474, 824
MboI	GATC	4 cut(s)	64, 446, 472, 822
MboII	GAAGA	4 cut(s)	58, 832, 845, 860
MfeI	CAATTG	1 cut(s)	171
MflI	RGATCY	1 cut(s)	446
MhlI	GDGCHC	1 cut(s)	684
MlsI	TGGCCA	1 cut(s)	169
MluCI	AATT	3 cut(s)	151, 171, 627
MluNI	TGGCCA	1 cut(s)	169
Mly113I	GGCGCC	1 cut(s)	555
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	2 cut(s)	458, 695
Mox20I	TGGCCA	1 cut(s)	169
MscI	TGGCCA	1 cut(s)	169
MseI	TTAA	1 cut(s)	726
MslI	CAYNNNNRTG	1 cut(s)	324
Msp20I	TGGCCA	1 cut(s)	169
MspI	CCGG	1 cut(s)	202
MspR9I	CCNGG	2 cut(s)	257, 600
MunI	CAATTG	1 cut(s)	171
MvaI	CCWGG	2 cut(s)	257, 600
MwoI	GCNNNNNNNGC	3 cut(s)	552, 600, 609
NarI	GGCGCC	1 cut(s)	555
NdeII	GATC	4 cut(s)	64, 446, 472, 822
NlaIII	CATG	6 cut(s)	165, 356, 590, 612, 755, 862
NlaIV	GGNNCC	3 cut(s)	147, 448, 556
NmuCI	GTSAC	2 cut(s)	52, 616
NspI	RCATGY	1 cut(s)	590
PciI	ACATGT	1 cut(s)	586
PflMI	CCANNNNNTGG	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	548
PleI	GAGTC	1 cut(s)	136
PluTI	GGCGCC	1 cut(s)	558
PpsI	GAGTC	1 cut(s)	136
PscI	ACATGT	1 cut(s)	586
Psp6I	CCWGG	2 cut(s)	255, 598
PspGI	CCWGG	2 cut(s)	255, 598
PspN4I	GGNNCC	3 cut(s)	147, 448, 556
PspPI	GGNCC	1 cut(s)	253
PstI	CTGCAG	1 cut(s)	596
PstNI	CAGNNNCTG	1 cut(s)	710
PsuI	RGATCY	1 cut(s)	446
RsaI	GTAC	3 cut(s)	309, 750, 787
RsaNI	GTAC	3 cut(s)	308, 749, 786
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	1 cut(s)	726
SatI	GCNGC	1 cut(s)	547
Sau3AI	GATC	4 cut(s)	64, 446, 472, 822
Sau96I	GGNCC	1 cut(s)	253
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	257, 600
SduI	GDGCHC	1 cut(s)	684
SfcI	CTRYAG	1 cut(s)	592
SfoI	GGCGCC	1 cut(s)	556
SinI	GGWCC	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
SpeI	ACTAGT	1 cut(s)	488
Sse9I	AATT	3 cut(s)	151, 171, 627
SspDI	GGCGCC	1 cut(s)	554
SspMI	CTAG	3 cut(s)	305, 423, 489
StyD4I	CCNGG	2 cut(s)	255, 598
StyI	CCWWGG	1 cut(s)	579
TaaI	ACNGT	2 cut(s)	664, 677
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	2 cut(s)	394, 452
TasI	AATT	3 cut(s)	151, 171, 627
TatI	WGTACW	1 cut(s)	748
Tru1I	TTAA	1 cut(s)	726
Tru9I	TTAA	1 cut(s)	726
TscAI	CASTG	4 cut(s)	61, 326, 667, 682
TseFI	GTSAC	2 cut(s)	52, 616
TseI	GCWGC	1 cut(s)	546
Tsp45I	GTSAC	2 cut(s)	52, 616
TspDTI	ATGAA	4 cut(s)	297, 341, 474, 597
TspRI	CASTG	4 cut(s)	61, 326, 667, 682
Van91I	CCANNNNNTGG	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	253
XapI	RAATTY	1 cut(s)	627
XceI	RCATGY	1 cut(s)	590
XspI	CTAG	3 cut(s)	305, 423, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.