Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007448.1

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Reverse (-)

1532 .. 3457

Gene Structure 1926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007448.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atggcagattccatattcctcaaggctccaaattgtgggacatggtggccaattgaagtgaaaatgtcagtttgtggtagtcgaatgtggttacacaaggggtggcaagagtttgcaaacttttactcgctggaccaaggctacttcgcattgttcacctatgaaggcgaacattcccatttcctagtacgcctttttcattggaatgatatggaaatagactaccctattcatggaagaggtatgtgtgtttgtgtttttgagagagtttggactgctcaatgcactgttggtgaaaacagtgagcacaaactatatgcaagagtttcaggtgctggttggaaggcatttaaggaggacaattatctggaagtacatgatgtctgtgtctttgagttgatagaggagcgtacattcaaagtttccataatccgagccaaagtgaagatcaataagctagatgaggaaagtgaagacaagctcatgttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

163

Amino Acids

19.22

Weight (kDa)

5.63

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	35
AcoI	YGGCCR	1 cut(s)	47
AfaI	GTAC	3 cut(s)	189, 375, 412
AfiI	CCNNNNNNNGG	2 cut(s)	35, 233
AgsI	TTSAA	2 cut(s)	56, 418
AluBI	AGCT	2 cut(s)	457, 481
AluI	AGCT	2 cut(s)	457, 481
Alw21I	GWGCWC	1 cut(s)	309
AlwNI	CAGNNNCTG	1 cut(s)	335
AoxI	GGCC	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	133
AsuHPI	GGTGA	2 cut(s)	148, 305
AvaII	GGWCC	1 cut(s)	133
BalI	TGGCCA	1 cut(s)	49
BbsI	GAAGAC	1 cut(s)	480
Bbv12I	GWGCWC	1 cut(s)	309
BfaI	CTAG	2 cut(s)	185, 458
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	27
BpiI	GAAGAC	1 cut(s)	480
BpuEI	CTTGAG	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 233
BseDI	CCNNGG	1 cut(s)	136
BseLI	CCNNNNNNNGG	2 cut(s)	35, 233
BseRI	GAGGAG	1 cut(s)	419
BshFI	GGCC	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	309
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	2 cut(s)	35, 233
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	1 cut(s)	447
BspANI	GGCC	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	27
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	1 cut(s)	447
BssT1I	CCWWGG	1 cut(s)	136
Bst4CI	ACNGT	2 cut(s)	289, 302
Bst6I	CTCTTC	1 cut(s)	232
BstKTI	GATC	1 cut(s)	450
BstMBI	GATC	1 cut(s)	447
BstV2I	GAAGAC	1 cut(s)	480
BsuRI	GGCC	1 cut(s)	49
BtsIMutI	CAGTG	2 cut(s)	285, 307
CaiI	CAGNNNCTG	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	133
Csp6I	GTAC	3 cut(s)	188, 374, 411
CviAII	CATG	4 cut(s)	42, 233, 377, 484
CviJI	RGCY	6 cut(s)	26, 49, 141, 437, 457, 481
CviKI_1	RGCY	6 cut(s)	26, 49, 141, 437, 457, 481
CviQI	GTAC	3 cut(s)	188, 374, 411
DpnI	GATC	1 cut(s)	449
DpnII	GATC	1 cut(s)	447
EaeI	YGGCCR	1 cut(s)	47
Eam1104I	CTCTTC	1 cut(s)	232
EarI	CTCTTC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	136
FaeI	CATG	4 cut(s)	45, 236, 380, 487
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	4 cut(s)	41, 232, 376, 483
FspBI	CTAG	2 cut(s)	185, 458
HaeIII	GGCC	1 cut(s)	49
Hin1II	CATG	4 cut(s)	45, 236, 380, 487
HinfI	GANTC	1 cut(s)	8
HphI	GGTGA	2 cut(s)	148, 305
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188I	TCNGA	1 cut(s)	434
Hpy188III	TCNNGA	1 cut(s)	368
Hpy8I	GTNNAC	1 cut(s)	156
HpyAV	CCTTC	2 cut(s)	158, 337
HpyCH4III	ACNGT	2 cut(s)	289, 302
HpyCH4V	TGCA	3 cut(s)	116, 285, 320
Hsp92II	CATG	4 cut(s)	45, 236, 380, 487
Kzo9I	GATC	1 cut(s)	447
LmnI	GCTCC	2 cut(s)	31, 406
LpnPI	CCDG	4 cut(s)	116, 315, 321, 353
MaeI	CTAG	2 cut(s)	185, 458
MaeIII	GTNAC	1 cut(s)	90
MalI	GATC	1 cut(s)	449
MboI	GATC	1 cut(s)	447
MboII	GAAGA	3 cut(s)	249, 457, 485
MfeI	CAATTG	1 cut(s)	51
MhlI	GDGCHC	1 cut(s)	309
MlsI	TGGCCA	1 cut(s)	49
MluCI	AATT	3 cut(s)	31, 51, 361
MluNI	TGGCCA	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	320
MnlI	CCTC	5 cut(s)	29, 233, 349, 397, 457
Mox20I	TGGCCA	1 cut(s)	49
MscI	TGGCCA	1 cut(s)	49
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	204
Msp20I	TGGCCA	1 cut(s)	49
MunI	CAATTG	1 cut(s)	51
NdeII	GATC	1 cut(s)	447
NlaIII	CATG	4 cut(s)	45, 236, 380, 487
NlaIV	GGNNCC	1 cut(s)	27
PfeI	GAWTC	1 cut(s)	8
PflMI	CCANNNNNTGG	1 cut(s)	35
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	133
PstNI	CAGNNNCTG	1 cut(s)	335
RsaI	GTAC	3 cut(s)	189, 375, 412
RsaNI	GTAC	3 cut(s)	188, 374, 411
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	351
Sau3AI	GATC	1 cut(s)	447
Sau96I	GGNCC	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	5 cut(s)	161, 244, 334, 459, 483
SinI	GGWCC	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	3 cut(s)	31, 51, 361
SspMI	CTAG	2 cut(s)	185, 458
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	2 cut(s)	289, 302
TaqI	TCGA	1 cut(s)	82
TasI	AATT	3 cut(s)	31, 51, 361
TatI	WGTACW	1 cut(s)	373
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	2 cut(s)	292, 307
TspDTI	ATGAA	3 cut(s)	177, 188, 221
TspRI	CASTG	2 cut(s)	292, 307
Van91I	CCANNNNNTGG	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	133
XspI	CTAG	2 cut(s)	185, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.