Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Forward (+)

23239968 .. 23247774

Gene Structure 7807 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG255000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCCACAATGTCACGCCCAATGGCTTCTCGGAGCAACAGAGAGGGAAGAGGACATGCCTTCCCAGTGGACTCTCCAAGCTTCTACTTGAAGATTGTTACTACTGTGGATCTCCAAGATGGGAAGGAACTTCCAGAGCCAGCTGTGACGAAGTATGGGAATTGTATGGCAGACTCCATATTCCTCAAGGTTCCCAATTGCGGAACACCATGGCCAGTAGAACTAAAAAAAACGATTCGTGGTAGCCGAATCTGGTTACAAAAAGGATGGGAACTATTCACAGACGTTTACTCCATAGACCAAGATTACTTCATAGTGTTCAGCTATGAAGGCGAACATTCTTATTTCCAAGTACACATTTTCAACTGCAACAATATGGAAATAGGTTATCCAATTAGTGGAGGGATCCCAACATGCATGTCTACACCCAATTCAAAAGGTACCTCCATTCCCTCTGCATCATCTGCTGGCAGAGACCAAAACAATGACAACAAACGTGACTTTTATGGAGCTAACAATTTCAAATTCGGGGACAAGCCTAGTTTTCGGGTCATAATGACTGAAAAATACTTATCATCTTTCTTGAAAGTACCTTCGTACTTCACCATCGAACATCTGTGTGAAATAGGGTCTCATTCTACTGTGACCTTACAGACTTCAGGTGAAAGAACTTGGACTGTTCAGTGTGCTGTCAGAAAATGTGGGAAAAATGCAAGATTCAATCGTGCTAGTTGGAGAGGATTTGTGAAGGGCAATCAATTGGAAGCACGTGATGATTGTCTGTTTGAGTTGATAGGCGAACGTACGCTCAAAGTCAACATATCCCGAGCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

278

Amino Acids

31.42

Weight (kDa)

8.94

Isoelectric Point (pI)

36.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	32 - 122	2e-07	B3 DNA binding domain
B3	PF02362	186 - 277	3.8e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	440
AccB1I	GGYRCC	1 cut(s)	440
AccB7I	CCANNNNNTGG	1 cut(s)	398
AccI	GTMKAC	1 cut(s)	422
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	3 cut(s)	117, 400, 413
AcoI	YGGCCR	2 cut(s)	3, 212
AcsI	RAATTY	1 cut(s)	524
AcuI	CTGAAG	1 cut(s)	642
AcvI	CACGTG	1 cut(s)	770
AfaI	GTAC	5 cut(s)	354, 442, 591, 599, 805
AfiI	CCNNNNNNNGG	2 cut(s)	200, 398
AgsI	TTSAA	6 cut(s)	91, 364, 435, 523, 586, 721
AluBI	AGCT	5 cut(s)	81, 143, 324, 512, 830
AluI	AGCT	5 cut(s)	81, 143, 324, 512, 830
Alw26I	GTCTC	2 cut(s)	468, 636
AlwI	GGATC	3 cut(s)	117, 400, 413
Ama87I	CYCGRG	1 cut(s)	825
AoxI	GGCC	2 cut(s)	3, 212
ApoI	RAATTY	1 cut(s)	524
Asp718I	GGTACC	1 cut(s)	440
AsuHPI	GGTGA	2 cut(s)	595, 674
AvaI	CYCGRG	1 cut(s)	825
BalI	TGGCCA	2 cut(s)	5, 214
BamHI	GGATCC	1 cut(s)	405
BanI	GGYRCC	1 cut(s)	440
BbrPI	CACGTG	1 cut(s)	770
BccI	CCATC	3 cut(s)	113, 261, 614
BcoDI	GTCTC	2 cut(s)	468, 636
BfaI	CTAG	2 cut(s)	540, 729
BmeT110I	CYCGRG	1 cut(s)	825
BmiI	GGNNCC	3 cut(s)	192, 407, 442
BmrI	ACTGGG	1 cut(s)	59
BmsI	GCATC	1 cut(s)	467
BmuI	ACTGGG	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	170
BsaAI	YACGTR	1 cut(s)	770
BsaI	GGTCTC	2 cut(s)	468, 636
BsaJI	CCNNGG	1 cut(s)	209
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 398
Bse1I	ACTGG	2 cut(s)	65, 215
BseDI	CCNNGG	1 cut(s)	209
BseGI	GGATG	1 cut(s)	272
BseLI	CCNNNNNNNGG	2 cut(s)	200, 398
BseNI	ACTGG	2 cut(s)	65, 215
BshFI	GGCC	2 cut(s)	5, 214
BshNI	GGYRCC	1 cut(s)	440
BsiHKCI	CYCGRG	1 cut(s)	825
BsiWI	CGTACG	1 cut(s)	803
BslFI	GGGAC	1 cut(s)	545
BslI	CCNNNNNNNGG	2 cut(s)	200, 398
BsmAI	GTCTC	2 cut(s)	468, 636
BsmFI	GGGAC	1 cut(s)	545
BsnI	GGCC	2 cut(s)	5, 214
Bso31I	GGTCTC	2 cut(s)	468, 636
BsoBI	CYCGRG	1 cut(s)	825
Bsp143I	GATC	2 cut(s)	109, 405
Bsp19I	CCATGG	1 cut(s)	209
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	2 cut(s)	5, 214
BspLI	GGNNCC	3 cut(s)	192, 407, 442
BspPI	GGATC	3 cut(s)	117, 400, 413
BspT107I	GGYRCC	1 cut(s)	440
BspTNI	GGTCTC	2 cut(s)	468, 636
BsrI	ACTGG	2 cut(s)	65, 215
BssECI	CCNNGG	1 cut(s)	209
BssMI	GATC	2 cut(s)	109, 405
BssT1I	CCWWGG	1 cut(s)	209
Bst4CI	ACNGT	3 cut(s)	106, 643, 679
Bst6I	CTCTTC	1 cut(s)	43
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstBAI	YACGTR	1 cut(s)	770
BstC8I	GCNNGC	2 cut(s)	141, 469
BstDSI	CCRYGG	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	272
BstKTI	GATC	2 cut(s)	112, 408
BstMAI	GTCTC	2 cut(s)	468, 636
BstMBI	GATC	2 cut(s)	109, 405
BstMWI	GCNNNNNNNGC	2 cut(s)	330, 464
BstNSI	RCATGY	3 cut(s)	59, 417, 421
BstX2I	RGATCY	2 cut(s)	109, 405
BstYI	RGATCY	2 cut(s)	109, 405
BsuRI	GGCC	2 cut(s)	5, 214
BtgI	CCRYGG	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	272
BtsIMutI	CAGTG	2 cut(s)	72, 689
Cac8I	GCNNGC	2 cut(s)	141, 469
Csp6I	GTAC	5 cut(s)	353, 441, 590, 598, 804
CviAII	CATG	4 cut(s)	56, 210, 414, 418
CviQI	GTAC	5 cut(s)	353, 441, 590, 598, 804
DpnI	GATC	2 cut(s)	111, 407
DpnII	GATC	2 cut(s)	109, 405
EaeI	YGGCCR	2 cut(s)	3, 212
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	209
Eco31I	GGTCTC	2 cut(s)	468, 636
Eco57I	CTGAAG	1 cut(s)	642
Eco72I	CACGTG	1 cut(s)	770
Eco88I	CYCGRG	1 cut(s)	825
EcoT14I	CCWWGG	1 cut(s)	209
EcoT22I	ATGCAT	1 cut(s)	419
ErhI	CCWWGG	1 cut(s)	209
FaeI	CATG	4 cut(s)	59, 213, 417, 421
FaqI	GGGAC	1 cut(s)	545
FatI	CATG	4 cut(s)	55, 209, 413, 417
FblI	GTMKAC	1 cut(s)	422
FokI	GGATG	1 cut(s)	279
FspBI	CTAG	2 cut(s)	540, 729
HaeIII	GGCC	2 cut(s)	5, 214
Hin1II	CATG	4 cut(s)	59, 213, 417, 421
HincII	GTYRAC	1 cut(s)	817
HindII	GTYRAC	1 cut(s)	817
HindIII	AAGCTT	1 cut(s)	79
HinfI	GANTC	5 cut(s)	71, 173, 235, 249, 717
HphI	GGTGA	2 cut(s)	595, 674
Hpy166II	GTNNAC	5 cut(s)	70, 289, 355, 423, 817
Hpy188I	TCNGA	2 cut(s)	33, 695
Hpy188III	TCNNGA	3 cut(s)	134, 583, 825
Hpy8I	GTNNAC	5 cut(s)	70, 289, 355, 423, 817
HpyAV	CCTTC	5 cut(s)	70, 118, 323, 603, 742
HpyCH4III	ACNGT	3 cut(s)	106, 643, 679
HpyCH4IV	ACGT	4 cut(s)	285, 496, 769, 802
HpyCH4V	TGCA	4 cut(s)	369, 417, 458, 713
HpyF10VI	GCNNNNNNNGC	2 cut(s)	330, 464
HpySE526I	ACGT	4 cut(s)	285, 496, 769, 802
Hsp92II	CATG	4 cut(s)	59, 213, 417, 421
KpnI	GGTACC	1 cut(s)	444
Kzo9I	GATC	2 cut(s)	109, 405
LmnI	GCTCC	2 cut(s)	33, 509
LpnPI	CCDG	7 cut(s)	78, 147, 153, 228, 238, 453, 645
LweI	GCATC	1 cut(s)	467
MaeI	CTAG	2 cut(s)	540, 729
MaeII	ACGT	4 cut(s)	285, 496, 769, 802
MaeIII	GTNAC	6 cut(s)	12, 97, 145, 255, 497, 643
MalI	GATC	2 cut(s)	111, 407
MboI	GATC	2 cut(s)	109, 405
MboII	GAAGA	2 cut(s)	60, 103
MfeI	CAATTG	2 cut(s)	196, 758
MflI	RGATCY	2 cut(s)	109, 405
MlsI	TGGCCA	2 cut(s)	5, 214
MluCI	AATT	7 cut(s)	160, 196, 393, 430, 517, 524, 758
MluNI	TGGCCA	2 cut(s)	5, 214
MlyI	GAGTC	2 cut(s)	65, 167
MmeI	TCCRAC	1 cut(s)	713
MnlI	CCTC	7 cut(s)	37, 44, 194, 395, 454, 463, 731
Mox20I	TGGCCA	2 cut(s)	5, 214
Mph1103I	ATGCAT	1 cut(s)	419
MscI	TGGCCA	2 cut(s)	5, 214
MslI	CAYNNNNRTG	1 cut(s)	618
Msp20I	TGGCCA	2 cut(s)	5, 214
MspA1I	CMGCKG	1 cut(s)	143
MunI	CAATTG	2 cut(s)	196, 758
MwoI	GCNNNNNNNGC	2 cut(s)	330, 464
NcoI	CCATGG	1 cut(s)	209
NdeII	GATC	2 cut(s)	109, 405
NlaIII	CATG	4 cut(s)	59, 213, 417, 421
NlaIV	GGNNCC	3 cut(s)	192, 407, 442
NmuCI	GTSAC	4 cut(s)	12, 145, 497, 643
NsiI	ATGCAT	1 cut(s)	419
NspI	RCATGY	3 cut(s)	59, 417, 421
PcsI	WCGNNNNNNNCGW	1 cut(s)	244
PfeI	GAWTC	3 cut(s)	235, 249, 717
Pfl23II	CGTACG	1 cut(s)	803
PflMI	CCANNNNNTGG	1 cut(s)	398
PleI	GAGTC	2 cut(s)	65, 167
PmaCI	CACGTG	1 cut(s)	770
PmlI	CACGTG	1 cut(s)	770
PpsI	GAGTC	2 cut(s)	65, 167
Ppu21I	YACGTR	1 cut(s)	770
PspCI	CACGTG	1 cut(s)	770
PspLI	CGTACG	1 cut(s)	803
PspN4I	GGNNCC	3 cut(s)	192, 407, 442
PsuI	RGATCY	2 cut(s)	109, 405
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	5 cut(s)	354, 442, 591, 599, 805
RsaNI	GTAC	5 cut(s)	353, 441, 590, 598, 804
RseI	CAYNNNNRTG	1 cut(s)	618
Sau3AI	GATC	2 cut(s)	109, 405
SchI	GAGTC	2 cut(s)	65, 167
SfaNI	GCATC	1 cut(s)	467
SmiMI	CAYNNNNRTG	1 cut(s)	618
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	7 cut(s)	160, 196, 393, 430, 517, 524, 758
SsiI	CCGC	1 cut(s)	201
SspMI	CTAG	2 cut(s)	540, 729
StyI	CCWWGG	1 cut(s)	209
TaaI	ACNGT	3 cut(s)	106, 643, 679
TaiI	ACGT	4 cut(s)	288, 499, 772, 805
TaqI	TCGA	1 cut(s)	609
TasI	AATT	7 cut(s)	160, 196, 393, 430, 517, 524, 758
TatI	WGTACW	1 cut(s)	352
TfiI	GAWTC	3 cut(s)	235, 249, 717
TscAI	CASTG	2 cut(s)	72, 689
TseFI	GTSAC	4 cut(s)	12, 145, 497, 643
Tsp45I	GTSAC	4 cut(s)	12, 145, 497, 643
TspDTI	ATGAA	2 cut(s)	301, 342
TspRI	CASTG	2 cut(s)	72, 689
Van91I	CCANNNNNTGG	1 cut(s)	398
XapI	RAATTY	1 cut(s)	524
XceI	RCATGY	3 cut(s)	59, 417, 421
XmiI	GTMKAC	1 cut(s)	422
XspI	CTAG	2 cut(s)	540, 729
Zsp2I	ATGCAT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.