Rh2DG673100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000407
Physical Location & Seq
Reverse (-)
89516392 .. 89516700
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG673100.1

Sequence Viewer

Length: 198 bp
ATGGAAACAGGTTACCCAGTTCGTGGAGGAGCTGGTGGATGCATGTCTACACCCAAGGTAAAAGGTCGCTCCTTTCCCTCTGCGTCATCTGCTGGTAGAGACCAAAACAATGACAATCGTCATGACTTTTACGGAGCTAGCAATCTCAAATCCGGGGACAAGCCAAGTTTTCAGGTCACAATGACTGCAATATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

6.9

Weight (kDa)

9.36

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000407)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 23
AccI GTMKAC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 23
AluBI AGCT 2 cut(s) 32, 137
AluI AGCT 2 cut(s) 32, 137
Alw26I GTCTC 1 cut(s) 93
AsuC2I CCSGG 1 cut(s) 154
AsuNHI GCTAGC 1 cut(s) 137
BcnI CCSGG 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 1 cut(s) 138
Bme1390I CCNGG 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 154
BmrI ACTGGG 1 cut(s) 11
BmsI GCATC 1 cut(s) 29
BmtI GCTAGC 1 cut(s) 141
BmuI ACTGGG 1 cut(s) 11
BoxI GACNNNNGTC 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 154
BsaI GGTCTC 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 54, 153
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 17
BseDI CCNNGG 2 cut(s) 54, 153
BseGI GGATG 1 cut(s) 44
BseLI CCNNNNNNNGG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 1 cut(s) 42
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 170
Bso31I GGTCTC 1 cut(s) 93
BspHI TCATGA 1 cut(s) 121
BspOI GCTAGC 1 cut(s) 141
BspTNI GGTCTC 1 cut(s) 93
BsrI ACTGG 1 cut(s) 17
BssECI CCNNGG 2 cut(s) 54, 153
BssT1I CCWWGG 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 139
BstEII GGTNACC 1 cut(s) 11
BstF5I GGATG 1 cut(s) 44
BstMAI GTCTC 1 cut(s) 93
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 46
BstPAI GACNNNNGTC 1 cut(s) 117
BstPI GGTNACC 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 152
BtsCI GGATG 1 cut(s) 44
Cac8I GCNNGC 1 cut(s) 139
CciI TCATGA 1 cut(s) 121
CseI GACGC 1 cut(s) 72
CviAII CATG 2 cut(s) 43, 122
CviJI RGCY 3 cut(s) 32, 137, 163
CviKI_1 RGCY 3 cut(s) 32, 137, 163
Eco130I CCWWGG 1 cut(s) 54
Eco31I GGTCTC 1 cut(s) 93
Eco91I GGTNACC 1 cut(s) 11
EcoO65I GGTNACC 1 cut(s) 11
EcoT14I CCWWGG 1 cut(s) 54
EcoT22I ATGCAT 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 2 cut(s) 46, 125
FaiI YATR 3 cut(s) 44, 123, 193
FaqI GGGAC 1 cut(s) 170
FatI CATG 2 cut(s) 42, 121
FblI GTMKAC 1 cut(s) 47
FokI GGATG 1 cut(s) 51
FspBI CTAG 1 cut(s) 138
HapII CCGG 1 cut(s) 153
HgaI GACGC 1 cut(s) 72
Hin1II CATG 2 cut(s) 46, 125
HpaII CCGG 1 cut(s) 153
Hpy166II GTNNAC 1 cut(s) 48
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 1 cut(s) 48
HpyCH4V TGCA 2 cut(s) 42, 188
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
Hsp92II CATG 2 cut(s) 46, 125
LmnI GCTCC 3 cut(s) 29, 74, 134
LpnPI CCDG 5 cut(s) 18, 30, 78, 158, 166
LweI GCATC 1 cut(s) 29
MaeI CTAG 1 cut(s) 138
MaeIII GTNAC 2 cut(s) 11, 175
MnlI CCTC 2 cut(s) 20, 88
Mph1103I ATGCAT 1 cut(s) 44
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 154
MwoI GCNNNNNNNGC 1 cut(s) 89
NciI CCSGG 1 cut(s) 154
NheI GCTAGC 1 cut(s) 137
NlaIII CATG 2 cut(s) 46, 125
NmuCI GTSAC 1 cut(s) 175
NsiI ATGCAT 1 cut(s) 44
NspI RCATGY 1 cut(s) 46
PagI TCATGA 1 cut(s) 121
PflMI CCANNNNNTGG 1 cut(s) 23
PshAI GACNNNNGTC 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 11
ScrFI CCNGG 1 cut(s) 154
SetI ASST 6 cut(s) 13, 34, 60, 67, 139, 177
SfaNI GCATC 1 cut(s) 29
SspMI CTAG 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 152
StyI CCWWGG 1 cut(s) 54
TseFI GTSAC 1 cut(s) 175
Tsp45I GTSAC 1 cut(s) 175
TspGWI ACGGA 1 cut(s) 147
Van91I CCANNNNNTGG 1 cut(s) 23
XceI RCATGY 1 cut(s) 46
XmiI GTMKAC 1 cut(s) 47
XspI CTAG 1 cut(s) 138
Zsp2I ATGCAT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.