B3 domain-containing
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 422 |
| Acc16I | TGCGCA | 2 cut(s) | 849, 1377 |
| Acc36I | ACCTGC | 1 cut(s) | 301 |
| AccB1I | GGYRCC | 1 cut(s) | 1219 |
| AccI | GTMKAC | 1 cut(s) | 886 |
| AccIII | TCCGGA | 2 cut(s) | 301, 734 |
| AciI | CCGC | 1 cut(s) | 720 |
| AclWI | GGATC | 5 cut(s) | 732, 745, 1260, 1273, 1432 |
| AcoI | YGGCCR | 1 cut(s) | 481 |
| AcsI | RAATTY | 2 cut(s) | 457, 1447 |
| AcvI | CACGTG | 1 cut(s) | 254 |
| AdeI | CACNNNGTG | 1 cut(s) | 1507 |
| AfaI | GTAC | 5 cut(s) | 189, 244, 392, 591, 1078 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 35, 635, 1163 |
| AflIII | ACRYGT | 1 cut(s) | 592 |
| AgsI | TTSAA | 6 cut(s) | 23, 457, 726, 787, 1084, 1315 |
| AhlI | ACTAGT | 1 cut(s) | 1307 |
| AjnI | CCWGG | 5 cut(s) | 889, 1201, 1417, 1528, 1670 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 129, 161, 1278, 1310 |
| AleI | CACNNNNGTG | 1 cut(s) | 1383 |
| Alw21I | GWGCWC | 1 cut(s) | 953 |
| Alw26I | GTCTC | 1 cut(s) | 1523 |
| Alw44I | GTGCAC | 1 cut(s) | 949 |
| AlwI | GGATC | 5 cut(s) | 732, 745, 1260, 1273, 1432 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1001, 1529 |
| Ama87I | CYCGRG | 1 cut(s) | 422 |
| Aor13HI | TCCGGA | 2 cut(s) | 301, 734 |
| AoxI | GGCC | 2 cut(s) | 481, 1526 |
| ApaLI | GTGCAC | 1 cut(s) | 949 |
| ApeKI | GCWGC | 2 cut(s) | 141, 1397 |
| ApoI | RAATTY | 2 cut(s) | 457, 1447 |
| AseI | ATTAAT | 1 cut(s) | 1116 |
| AspLEI | GCGC | 3 cut(s) | 850, 1365, 1378 |
| AspS9I | GGNCC | 2 cut(s) | 290, 1526 |
| AsuHPI | GGTGA | 3 cut(s) | 938, 1493, 1583 |
| AvaI | CYCGRG | 1 cut(s) | 422 |
| AvaII | GGWCC | 1 cut(s) | 290 |
| BaeGI | GKGCMC | 1 cut(s) | 953 |
| BamHI | GGATCC | 2 cut(s) | 737, 1265 |
| BanI | GGYRCC | 1 cut(s) | 1219 |
| BauI | CACGAG | 1 cut(s) | 474 |
| BbrPI | CACGTG | 1 cut(s) | 254 |
| BbsI | GAAGAC | 1 cut(s) | 1287 |
| Bbv12I | GWGCWC | 1 cut(s) | 953 |
| BbvCI | CCTCAGC | 3 cut(s) | 742, 1128, 1270 |
| BbvI | GCAGC | 2 cut(s) | 128, 1384 |
| BccI | CCATC | 7 cut(s) | 96, 275, 350, 498, 644, 999, 1506 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 752, 786, 839, 873 |
| BciT130I | CCWGG | 5 cut(s) | 891, 1203, 1419, 1530, 1672 |
| BclI | TGATCA | 1 cut(s) | 7 |
| BcoDI | GTCTC | 1 cut(s) | 1523 |
| BcuI | ACTAGT | 1 cut(s) | 1307 |
| BfaI | CTAG | 7 cut(s) | 131, 353, 533, 714, 987, 1242, 1308 |
| BfmI | CTRYAG | 3 cut(s) | 883, 914, 1442 |
| BfuAI | ACCTGC | 1 cut(s) | 301 |
| BisI | GCNGC | 3 cut(s) | 142, 720, 1398 |
| BlsI | GCNGC | 3 cut(s) | 143, 721, 1399 |
| Bme1390I | CCNGG | 5 cut(s) | 891, 1203, 1419, 1530, 1672 |
| Bme18I | GGWCC | 1 cut(s) | 290 |
| BmeT110I | CYCGRG | 1 cut(s) | 422 |
| BmgT120I | GGNCC | 2 cut(s) | 290, 1526 |
| BmiI | GGNNCC | 4 cut(s) | 429, 739, 1221, 1267 |
| BmrFI | CCNGG | 5 cut(s) | 891, 1203, 1419, 1530, 1672 |
| BmsI | GCATC | 1 cut(s) | 1397 |
| BpiI | GAAGAC | 1 cut(s) | 1287 |
| Bpu10I | CCTNAGC | 3 cut(s) | 742, 1128, 1270 |
| Bsa29I | ATCGAT | 1 cut(s) | 859 |
| BsaAI | YACGTR | 2 cut(s) | 254, 593 |
| BsaBI | GATNNNNATC | 1 cut(s) | 345 |
| BsaJI | CCNNGG | 5 cut(s) | 44, 136, 446, 870, 1627 |
| BsaWI | WCCGGW | 2 cut(s) | 301, 734 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 630, 660 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 35, 635, 1163 |
| Bse1I | ACTGG | 2 cut(s) | 149, 780 |
| Bse3DI | GCAATG | 2 cut(s) | 264, 1438 |
| Bse8I | GATNNNNATC | 1 cut(s) | 345 |
| BseAI | TCCGGA | 2 cut(s) | 301, 734 |
| BseBI | CCWGG | 5 cut(s) | 891, 1203, 1419, 1530, 1672 |
| BseCI | ATCGAT | 1 cut(s) | 859 |
| BseDI | CCNNGG | 5 cut(s) | 44, 136, 446, 870, 1627 |
| BseGI | GGATG | 3 cut(s) | 107, 509, 1010 |
| BseJI | GATNNNNATC | 1 cut(s) | 345 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 35, 635, 1163 |
| BseMI | GCAATG | 2 cut(s) | 264, 1438 |
| BseMII | CTCAG | 6 cut(s) | 73, 756, 1119, 1284, 1487, 1536 |
| BseNI | ACTGG | 2 cut(s) | 149, 780 |
| BseRI | GAGGAG | 5 cut(s) | 654, 657, 1085, 1182, 1469 |
| BseSI | GKGCMC | 1 cut(s) | 953 |
| BseXI | GCAGC | 2 cut(s) | 128, 1384 |
| BshFI | GGCC | 2 cut(s) | 483, 1528 |
| BshNI | GGYRCC | 1 cut(s) | 1219 |
| BshVI | ATCGAT | 1 cut(s) | 859 |
| BsiHKAI | GWGCWC | 1 cut(s) | 953 |
| BsiHKCI | CYCGRG | 1 cut(s) | 422 |
| BsiSI | CCGG | 3 cut(s) | 270, 302, 735 |
| BslFI | GGGAC | 1 cut(s) | 160 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 35, 635, 1163 |
| BsmAI | GTCTC | 1 cut(s) | 1523 |
| BsmFI | GGGAC | 1 cut(s) | 160 |
| BsnI | GGCC | 2 cut(s) | 483, 1528 |
| BsoBI | CYCGRG | 1 cut(s) | 422 |
| Bsp1286I | GDGCHC | 1 cut(s) | 953 |
| Bsp13I | TCCGGA | 2 cut(s) | 301, 734 |
| Bsp19I | CCATGG | 2 cut(s) | 44, 446 |
| BspACI | CCGC | 1 cut(s) | 720 |
| BspANI | GGCC | 2 cut(s) | 483, 1528 |
| BspCNI | CTCAG | 6 cut(s) | 72, 755, 1120, 1283, 1486, 1535 |
| BspDI | ATCGAT | 1 cut(s) | 859 |
| BspEI | TCCGGA | 2 cut(s) | 301, 734 |
| BspLI | GGNNCC | 4 cut(s) | 429, 739, 1221, 1267 |
| BspMAI | CTGCAG | 1 cut(s) | 918 |
| BspMI | ACCTGC | 1 cut(s) | 301 |
| BspPI | GGATC | 5 cut(s) | 732, 745, 1260, 1273, 1432 |
| BspT107I | GGYRCC | 1 cut(s) | 1219 |
| BsrDI | GCAATG | 2 cut(s) | 264, 1438 |
| BsrI | ACTGG | 2 cut(s) | 149, 780 |
| BssECI | CCNNGG | 5 cut(s) | 44, 136, 446, 870, 1627 |
| BssSI | CACGAG | 1 cut(s) | 474 |
| BssT1I | CCWWGG | 5 cut(s) | 44, 136, 446, 870, 1627 |
| Bst2BI | CACGAG | 1 cut(s) | 474 |
| Bst2UI | CCWGG | 5 cut(s) | 891, 1203, 1419, 1530, 1672 |
| Bst4CI | ACNGT | 2 cut(s) | 35, 174 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 900, 1394, 1428 |
| BstBAI | YACGTR | 2 cut(s) | 254, 593 |
| BstC8I | GCNNGC | 3 cut(s) | 378, 1125, 1512 |
| BstDEI | CTNAG | 8 cut(s) | 59, 742, 1128, 1234, 1270, 1473, 1522, 1683 |
| BstDSI | CCRYGG | 2 cut(s) | 44, 446 |
| BstF5I | GGATG | 3 cut(s) | 107, 509, 1010 |
| BstHHI | GCGC | 3 cut(s) | 850, 1365, 1378 |
| BstMAI | GTCTC | 1 cut(s) | 1523 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 567, 900, 1394, 1419, 1428 |
| BstNI | CCWGG | 5 cut(s) | 891, 1203, 1419, 1530, 1672 |
| BstNSI | RCATGY | 2 cut(s) | 694, 1363 |
| BstSCI | CCNGG | 5 cut(s) | 889, 1201, 1417, 1528, 1670 |
| BstSFI | CTRYAG | 3 cut(s) | 883, 914, 1442 |
| BstSLI | GKGCMC | 1 cut(s) | 953 |
| BstV1I | GCAGC | 2 cut(s) | 128, 1384 |
| BstV2I | GAAGAC | 1 cut(s) | 1287 |
| BstX2I | RGATCY | 2 cut(s) | 737, 1265 |
| BstYI | RGATCY | 2 cut(s) | 737, 1265 |
| Bsu15I | ATCGAT | 1 cut(s) | 859 |
| BsuRI | GGCC | 2 cut(s) | 483, 1528 |
| BsuTUI | ATCGAT | 1 cut(s) | 859 |
| BtgI | CCRYGG | 2 cut(s) | 44, 446 |
| BtgZI | GCGATG | 1 cut(s) | 918 |
| BtsCI | GGATG | 3 cut(s) | 107, 509, 1010 |
| BtsI | GCAGTG | 2 cut(s) | 558, 951 |
| BtsIMutI | CAGTG | 6 cut(s) | 156, 558, 608, 951, 1481, 1492 |
| BveI | ACCTGC | 1 cut(s) | 301 |
| Cac8I | GCNNGC | 3 cut(s) | 378, 1125, 1512 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1001, 1529 |
| CfoI | GCGC | 3 cut(s) | 850, 1365, 1378 |
| Cfr13I | GGNCC | 2 cut(s) | 290, 1526 |
| ClaI | ATCGAT | 1 cut(s) | 859 |
| Csp6I | GTAC | 5 cut(s) | 188, 243, 391, 590, 1077 |
| CviAII | CATG | 8 cut(s) | 45, 211, 403, 447, 635, 691, 1163, 1360 |
| CviQI | GTAC | 5 cut(s) | 188, 243, 391, 590, 1077 |
| DdeI | CTNAG | 8 cut(s) | 59, 742, 1128, 1234, 1270, 1473, 1522, 1683 |
| DraIII | CACNNNGTG | 1 cut(s) | 1507 |
| EaeI | YGGCCR | 1 cut(s) | 481 |
| Eco130I | CCWWGG | 5 cut(s) | 44, 136, 446, 870, 1627 |
| Eco47I | GGWCC | 1 cut(s) | 290 |
| Eco72I | CACGTG | 1 cut(s) | 254 |
| Eco88I | CYCGRG | 1 cut(s) | 422 |
| EcoO109I | RGGNCCY | 2 cut(s) | 290, 1526 |
| EcoRI | GAATTC | 1 cut(s) | 1447 |
| EcoRII | CCWGG | 5 cut(s) | 889, 1201, 1417, 1528, 1670 |
| EcoT14I | CCWWGG | 5 cut(s) | 44, 136, 446, 870, 1627 |
| EcoT22I | ATGCAT | 1 cut(s) | 212 |
| ErhI | CCWWGG | 5 cut(s) | 44, 136, 446, 870, 1627 |
| FaeI | CATG | 8 cut(s) | 48, 214, 406, 450, 638, 694, 1166, 1363 |
| FaqI | GGGAC | 1 cut(s) | 160 |
| FatI | CATG | 8 cut(s) | 44, 210, 402, 446, 634, 690, 1162, 1359 |
| FbaI | TGATCA | 1 cut(s) | 7 |
| FblI | GTMKAC | 1 cut(s) | 886 |
| Fnu4HI | GCNGC | 3 cut(s) | 142, 720, 1398 |
| FokI | GGATG | 3 cut(s) | 114, 516, 1017 |
| Fsp4HI | GCNGC | 3 cut(s) | 142, 720, 1398 |
| FspBI | CTAG | 7 cut(s) | 131, 353, 533, 714, 987, 1242, 1308 |
| FspI | TGCGCA | 2 cut(s) | 849, 1377 |
| GlaI | GCGC | 3 cut(s) | 849, 1364, 1377 |
| GluI | GCNGC | 3 cut(s) | 142, 720, 1398 |
| HaeIII | GGCC | 2 cut(s) | 483, 1528 |
| HapII | CCGG | 3 cut(s) | 270, 302, 735 |
| HhaI | GCGC | 3 cut(s) | 850, 1365, 1378 |
| Hin1II | CATG | 8 cut(s) | 48, 214, 406, 450, 638, 694, 1166, 1363 |
| Hin6I | GCGC | 3 cut(s) | 848, 1363, 1376 |
| HinP1I | GCGC | 3 cut(s) | 848, 1363, 1376 |
| HindIII | AAGCTT | 1 cut(s) | 316 |
| HpaII | CCGG | 3 cut(s) | 270, 302, 735 |
| HphI | GGTGA | 3 cut(s) | 938, 1493, 1583 |
| Hpy166II | GTNNAC | 5 cut(s) | 80, 887, 951, 1490, 1607 |
| Hpy188I | TCNGA | 5 cut(s) | 62, 975, 1100, 1321, 1453 |
| Hpy188III | TCNNGA | 6 cut(s) | 302, 371, 686, 735, 1214, 1263 |
| Hpy8I | GTNNAC | 5 cut(s) | 80, 887, 951, 1490, 1607 |
| HpyAV | CCTTC | 4 cut(s) | 158, 355, 533, 560 |
| HpyCH4III | ACNGT | 2 cut(s) | 35, 174 |
| HpyCH4IV | ACGT | 3 cut(s) | 253, 592, 1603 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 567, 900, 1394, 1419, 1428 |
| HpyF3I | CTNAG | 8 cut(s) | 59, 742, 1128, 1234, 1270, 1473, 1522, 1683 |
| HpySE526I | ACGT | 3 cut(s) | 253, 592, 1603 |
| Hsp92II | CATG | 8 cut(s) | 48, 214, 406, 450, 638, 694, 1166, 1363 |
| HspAI | GCGC | 3 cut(s) | 848, 1363, 1376 |
| Kpn2I | TCCGGA | 2 cut(s) | 301, 734 |
| Ksp22I | TGATCA | 1 cut(s) | 7 |
| LmnI | GCTCC | 3 cut(s) | 677, 1072, 1205 |
| Lsp1109I | GCAGC | 2 cut(s) | 128, 1384 |
| LweI | GCATC | 1 cut(s) | 1397 |
| MaeI | CTAG | 7 cut(s) | 131, 353, 533, 714, 987, 1242, 1308 |
| MaeII | ACGT | 3 cut(s) | 253, 592, 1603 |
| MaeIII | GTNAC | 4 cut(s) | 90, 334, 907, 1180 |
| MboII | GAAGA | 8 cut(s) | 258, 313, 477, 1123, 1251, 1286, 1292, 1651 |
| MflI | RGATCY | 2 cut(s) | 737, 1265 |
| MhlI | GDGCHC | 1 cut(s) | 953 |
| MluCI | AATT | 9 cut(s) | 397, 452, 457, 617, 726, 1173, 1249, 1329, 1447 |
| MmeI | TCCRAC | 1 cut(s) | 1514 |
| Mph1103I | ATGCAT | 1 cut(s) | 212 |
| MroI | TCCGGA | 2 cut(s) | 301, 734 |
| MseI | TTAA | 5 cut(s) | 326, 494, 813, 1116, 1545 |
| MslI | CAYNNNNRTG | 2 cut(s) | 215, 1383 |
| MspA1I | CMGCKG | 3 cut(s) | 380, 746, 1274 |
| MspI | CCGG | 3 cut(s) | 270, 302, 735 |
| MspR9I | CCNGG | 5 cut(s) | 891, 1203, 1419, 1530, 1672 |
| MvaI | CCWGG | 5 cut(s) | 891, 1203, 1419, 1530, 1672 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 567, 900, 1394, 1419, 1428 |
| NcoI | CCATGG | 2 cut(s) | 44, 446 |
| NlaIII | CATG | 8 cut(s) | 48, 214, 406, 450, 638, 694, 1166, 1363 |
| NlaIV | GGNNCC | 4 cut(s) | 429, 739, 1221, 1267 |
| NmuCI | GTSAC | 1 cut(s) | 907 |
| NsbI | TGCGCA | 2 cut(s) | 849, 1377 |
| NsiI | ATGCAT | 1 cut(s) | 212 |
| NspI | RCATGY | 2 cut(s) | 694, 1363 |
| OliI | CACNNNNGTG | 1 cut(s) | 1383 |
| PaeR7I | CTCGAG | 1 cut(s) | 422 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 481 |
| PkrI | GCNGC | 3 cut(s) | 143, 721, 1399 |
| PmaCI | CACGTG | 1 cut(s) | 254 |
| PmlI | CACGTG | 1 cut(s) | 254 |
| Ppu21I | YACGTR | 2 cut(s) | 254, 593 |
| PpuMI | RGGWCCY | 1 cut(s) | 290 |
| PshBI | ATTAAT | 1 cut(s) | 1116 |
| Psp5II | RGGWCCY | 1 cut(s) | 290 |
| Psp6I | CCWGG | 5 cut(s) | 889, 1201, 1417, 1528, 1670 |
| PspCI | CACGTG | 1 cut(s) | 254 |
| PspGI | CCWGG | 5 cut(s) | 889, 1201, 1417, 1528, 1670 |
| PspN4I | GGNNCC | 4 cut(s) | 429, 739, 1221, 1267 |
| PspPI | GGNCC | 2 cut(s) | 290, 1526 |
| PspPPI | RGGWCCY | 1 cut(s) | 290 |
| PspXI | VCTCGAGB | 1 cut(s) | 422 |
| PstI | CTGCAG | 1 cut(s) | 918 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1001, 1529 |
| PsuI | RGATCY | 2 cut(s) | 737, 1265 |
| PvuII | CAGCTG | 3 cut(s) | 380, 746, 1274 |
| RsaI | GTAC | 5 cut(s) | 189, 244, 392, 591, 1078 |
| RsaNI | GTAC | 5 cut(s) | 188, 243, 391, 590, 1077 |
| RseI | CAYNNNNRTG | 2 cut(s) | 215, 1383 |
| SaqAI | TTAA | 5 cut(s) | 326, 494, 813, 1116, 1545 |
| SatI | GCNGC | 3 cut(s) | 142, 720, 1398 |
| Sau96I | GGNCC | 2 cut(s) | 290, 1526 |
| ScrFI | CCNGG | 5 cut(s) | 891, 1203, 1419, 1530, 1672 |
| SduI | GDGCHC | 1 cut(s) | 953 |
| SfaNI | GCATC | 1 cut(s) | 1397 |
| SfcI | CTRYAG | 3 cut(s) | 883, 914, 1442 |
| Sfr274I | CTCGAG | 1 cut(s) | 422 |
| SinI | GGWCC | 1 cut(s) | 290 |
| SlaI | CTCGAG | 1 cut(s) | 422 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 215, 1383 |
| SmlI | CTYRAG | 1 cut(s) | 422 |
| SmoI | CTYRAG | 1 cut(s) | 422 |
| SpeI | ACTAGT | 1 cut(s) | 1307 |
| Sse9I | AATT | 9 cut(s) | 397, 452, 457, 617, 726, 1173, 1249, 1329, 1447 |
| SsiI | CCGC | 1 cut(s) | 720 |
| SspMI | CTAG | 7 cut(s) | 131, 353, 533, 714, 987, 1242, 1308 |
| StyD4I | CCNGG | 5 cut(s) | 889, 1201, 1417, 1528, 1670 |
| StyI | CCWWGG | 5 cut(s) | 44, 136, 446, 870, 1627 |
| TaaI | ACNGT | 2 cut(s) | 35, 174 |
| TaiI | ACGT | 3 cut(s) | 256, 595, 1606 |
| TaqI | TCGA | 4 cut(s) | 54, 423, 859, 1059 |
| TasI | AATT | 9 cut(s) | 397, 452, 457, 617, 726, 1173, 1249, 1329, 1447 |
| TatI | WGTACW | 1 cut(s) | 390 |
| TauI | GCSGC | 1 cut(s) | 722 |
| Tru1I | TTAA | 5 cut(s) | 326, 494, 813, 1116, 1545 |
| Tru9I | TTAA | 5 cut(s) | 326, 494, 813, 1116, 1545 |
| TscAI | CASTG | 6 cut(s) | 156, 558, 608, 958, 1481, 1492 |
| TseFI | GTSAC | 1 cut(s) | 907 |
| TseI | GCWGC | 2 cut(s) | 141, 1397 |
| Tsp45I | GTSAC | 1 cut(s) | 907 |
| TspRI | CASTG | 6 cut(s) | 156, 558, 608, 958, 1481, 1492 |
| VneI | GTGCAC | 1 cut(s) | 949 |
| VpaK11BI | GGWCC | 1 cut(s) | 290 |
| VspI | ATTAAT | 1 cut(s) | 1116 |
| XapI | RAATTY | 2 cut(s) | 457, 1447 |
| XceI | RCATGY | 2 cut(s) | 694, 1363 |
| XhoI | CTCGAG | 1 cut(s) | 422 |
| XmiI | GTMKAC | 1 cut(s) | 886 |
| XspI | CTAG | 7 cut(s) | 131, 353, 533, 714, 987, 1242, 1308 |
| Zsp2I | ATGCAT | 1 cut(s) | 212 |