B3 domain-containing
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 590 |
| Acc36I | ACCTGC | 1 cut(s) | 466 |
| AccI | GTMKAC | 2 cut(s) | 400, 1021 |
| AccIII | TCCGGA | 2 cut(s) | 466, 869 |
| AclWI | GGATC | 4 cut(s) | 867, 880, 1398, 1411 |
| AcoI | YGGCCR | 1 cut(s) | 649 |
| AcsI | RAATTY | 3 cut(s) | 59, 71, 1585 |
| AcuI | CTGAAG | 1 cut(s) | 281 |
| AcvI | CACGTG | 1 cut(s) | 419 |
| AdeI | CACNNNGTG | 1 cut(s) | 1645 |
| AfaI | GTAC | 5 cut(s) | 354, 409, 560, 759, 1213 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 200, 1298, 1328 |
| AflIII | ACRYGT | 1 cut(s) | 760 |
| AgsI | TTSAA | 5 cut(s) | 188, 861, 922, 1219, 1453 |
| AhlI | ACTAGT | 1 cut(s) | 1445 |
| AjiI | CACGTC | 1 cut(s) | 17 |
| AjnI | CCWGG | 5 cut(s) | 1024, 1339, 1555, 1666, 1808 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 294, 326, 1416, 1448 |
| Alw21I | GWGCWC | 2 cut(s) | 987, 1088 |
| Alw26I | GTCTC | 1 cut(s) | 131 |
| Alw44I | GTGCAC | 2 cut(s) | 983, 1084 |
| AlwI | GGATC | 4 cut(s) | 867, 880, 1398, 1411 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1136, 1667 |
| Ama87I | CYCGRG | 1 cut(s) | 590 |
| Aor13HI | TCCGGA | 2 cut(s) | 466, 869 |
| AoxI | GGCC | 3 cut(s) | 649, 852, 1664 |
| ApaLI | GTGCAC | 2 cut(s) | 983, 1084 |
| ApeKI | GCWGC | 4 cut(s) | 306, 711, 908, 911 |
| ApoI | RAATTY | 3 cut(s) | 59, 71, 1585 |
| AseI | ATTAAT | 1 cut(s) | 1251 |
| AspLEI | GCGC | 1 cut(s) | 1503 |
| AspS9I | GGNCC | 3 cut(s) | 455, 852, 1664 |
| AsuHPI | GGTGA | 2 cut(s) | 1073, 1721 |
| AvaI | CYCGRG | 1 cut(s) | 590 |
| AvaII | GGWCC | 1 cut(s) | 455 |
| BaeGI | GKGCMC | 2 cut(s) | 987, 1088 |
| BamHI | GGATCC | 2 cut(s) | 872, 1403 |
| BauI | CACGAG | 1 cut(s) | 642 |
| BbrPI | CACGTG | 1 cut(s) | 419 |
| BbsI | GAAGAC | 1 cut(s) | 1425 |
| Bbv12I | GWGCWC | 2 cut(s) | 987, 1088 |
| BbvCI | CCTCAGC | 2 cut(s) | 877, 1408 |
| BbvI | GCAGC | 4 cut(s) | 293, 698, 898, 920 |
| BccI | CCATC | 5 cut(s) | 261, 440, 515, 666, 1134 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 887, 921, 974, 1008 |
| BciT130I | CCWGG | 5 cut(s) | 1026, 1341, 1557, 1668, 1810 |
| BclI | TGATCA | 1 cut(s) | 172 |
| BcoDI | GTCTC | 1 cut(s) | 131 |
| BcuI | ACTAGT | 1 cut(s) | 1445 |
| BfaI | CTAG | 7 cut(s) | 296, 518, 701, 849, 1122, 1380, 1446 |
| BfmI | CTRYAG | 4 cut(s) | 906, 1018, 1049, 1580 |
| BfuAI | ACCTGC | 1 cut(s) | 466 |
| BisI | GCNGC | 4 cut(s) | 307, 712, 909, 912 |
| BlpI | GCTNAGC | 1 cut(s) | 715 |
| BlsI | GCNGC | 4 cut(s) | 308, 713, 910, 913 |
| Bme1390I | CCNGG | 5 cut(s) | 1026, 1341, 1557, 1668, 1810 |
| Bme18I | GGWCC | 1 cut(s) | 455 |
| BmeT110I | CYCGRG | 1 cut(s) | 590 |
| BmgBI | CACGTC | 1 cut(s) | 17 |
| BmgT120I | GGNCC | 3 cut(s) | 455, 852, 1664 |
| BmiI | GGNNCC | 3 cut(s) | 597, 874, 1405 |
| BmrFI | CCNGG | 5 cut(s) | 1026, 1341, 1557, 1668, 1810 |
| BmsI | GCATC | 1 cut(s) | 1535 |
| BpiI | GAAGAC | 1 cut(s) | 1425 |
| Bpu10I | CCTNAGC | 2 cut(s) | 877, 1408 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 715 |
| Bsa29I | ATCGAT | 1 cut(s) | 994 |
| BsaAI | YACGTR | 2 cut(s) | 419, 761 |
| BsaBI | GATNNNNATC | 1 cut(s) | 510 |
| BsaJI | CCNNGG | 5 cut(s) | 209, 301, 614, 1005, 1765 |
| BsaWI | WCCGGW | 2 cut(s) | 466, 869 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 200, 1298, 1328 |
| Bse1I | ACTGG | 2 cut(s) | 314, 915 |
| Bse3DI | GCAATG | 3 cut(s) | 429, 1045, 1576 |
| Bse8I | GATNNNNATC | 1 cut(s) | 510 |
| BseAI | TCCGGA | 2 cut(s) | 466, 869 |
| BseBI | CCWGG | 5 cut(s) | 1026, 1341, 1557, 1668, 1810 |
| BseCI | ATCGAT | 1 cut(s) | 994 |
| BseDI | CCNNGG | 5 cut(s) | 209, 301, 614, 1005, 1765 |
| BseGI | GGATG | 3 cut(s) | 272, 677, 1145 |
| BseJI | GATNNNNATC | 1 cut(s) | 510 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 200, 1298, 1328 |
| BseMI | GCAATG | 3 cut(s) | 429, 1045, 1576 |
| BseMII | CTCAG | 6 cut(s) | 127, 238, 891, 1254, 1422, 1625 |
| BseNI | ACTGG | 2 cut(s) | 314, 915 |
| BseRI | GAGGAG | 5 cut(s) | 822, 825, 1220, 1317, 1607 |
| BseSI | GKGCMC | 2 cut(s) | 987, 1088 |
| BseXI | GCAGC | 4 cut(s) | 293, 698, 898, 920 |
| BshFI | GGCC | 3 cut(s) | 651, 854, 1666 |
| BshVI | ATCGAT | 1 cut(s) | 994 |
| BsiHKAI | GWGCWC | 2 cut(s) | 987, 1088 |
| BsiHKCI | CYCGRG | 1 cut(s) | 590 |
| BsiSI | CCGG | 3 cut(s) | 435, 467, 870 |
| BslFI | GGGAC | 1 cut(s) | 325 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 200, 1298, 1328 |
| BsmAI | GTCTC | 1 cut(s) | 131 |
| BsmFI | GGGAC | 1 cut(s) | 325 |
| BsnI | GGCC | 3 cut(s) | 651, 854, 1666 |
| BsoBI | CYCGRG | 1 cut(s) | 590 |
| Bsp1286I | GDGCHC | 2 cut(s) | 987, 1088 |
| Bsp13I | TCCGGA | 2 cut(s) | 466, 869 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 715 |
| Bsp19I | CCATGG | 3 cut(s) | 209, 614, 1005 |
| BspANI | GGCC | 3 cut(s) | 651, 854, 1666 |
| BspCNI | CTCAG | 6 cut(s) | 126, 237, 890, 1255, 1421, 1624 |
| BspDI | ATCGAT | 1 cut(s) | 994 |
| BspEI | TCCGGA | 2 cut(s) | 466, 869 |
| BspLI | GGNNCC | 3 cut(s) | 597, 874, 1405 |
| BspMAI | CTGCAG | 2 cut(s) | 910, 1053 |
| BspMI | ACCTGC | 1 cut(s) | 466 |
| BspPI | GGATC | 4 cut(s) | 867, 880, 1398, 1411 |
| BsrDI | GCAATG | 3 cut(s) | 429, 1045, 1576 |
| BsrI | ACTGG | 2 cut(s) | 314, 915 |
| BssECI | CCNNGG | 5 cut(s) | 209, 301, 614, 1005, 1765 |
| BssSI | CACGAG | 1 cut(s) | 642 |
| BssT1I | CCWWGG | 5 cut(s) | 209, 301, 614, 1005, 1765 |
| Bst2BI | CACGAG | 1 cut(s) | 642 |
| Bst2UI | CCWGG | 5 cut(s) | 1026, 1341, 1557, 1668, 1810 |
| Bst4CI | ACNGT | 2 cut(s) | 200, 339 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1035, 1532, 1566 |
| BstBAI | YACGTR | 2 cut(s) | 419, 761 |
| BstC8I | GCNNGC | 2 cut(s) | 546, 1650 |
| BstDEI | CTNAG | 9 cut(s) | 113, 224, 715, 877, 1263, 1372, 1408, 1611, 1821 |
| BstDSI | CCRYGG | 3 cut(s) | 209, 614, 1005 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1326 |
| BstF5I | GGATG | 3 cut(s) | 272, 677, 1145 |
| BstHHI | GCGC | 1 cut(s) | 1503 |
| BstMAI | GTCTC | 1 cut(s) | 131 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 735, 1035, 1532, 1557, 1566 |
| BstNI | CCWGG | 5 cut(s) | 1026, 1341, 1557, 1668, 1810 |
| BstNSI | RCATGY | 2 cut(s) | 829, 1501 |
| BstSCI | CCNGG | 5 cut(s) | 1024, 1339, 1555, 1666, 1808 |
| BstSFI | CTRYAG | 4 cut(s) | 906, 1018, 1049, 1580 |
| BstSLI | GKGCMC | 2 cut(s) | 987, 1088 |
| BstV1I | GCAGC | 4 cut(s) | 293, 698, 898, 920 |
| BstV2I | GAAGAC | 1 cut(s) | 1425 |
| BstX2I | RGATCY | 2 cut(s) | 872, 1403 |
| BstYI | RGATCY | 2 cut(s) | 872, 1403 |
| Bsu15I | ATCGAT | 1 cut(s) | 994 |
| BsuRI | GGCC | 3 cut(s) | 651, 854, 1666 |
| BsuTUI | ATCGAT | 1 cut(s) | 994 |
| BtgI | CCRYGG | 3 cut(s) | 209, 614, 1005 |
| BtrI | CACGTC | 1 cut(s) | 17 |
| BtsCI | GGATG | 3 cut(s) | 272, 677, 1145 |
| BtsI | GCAGTG | 2 cut(s) | 726, 1086 |
| BtsIMutI | CAGTG | 7 cut(s) | 321, 726, 776, 1086, 1536, 1619, 1630 |
| BveI | ACCTGC | 1 cut(s) | 466 |
| Cac8I | GCNNGC | 2 cut(s) | 546, 1650 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1136, 1667 |
| CfoI | GCGC | 1 cut(s) | 1503 |
| Cfr13I | GGNCC | 3 cut(s) | 455, 852, 1664 |
| ClaI | ATCGAT | 1 cut(s) | 994 |
| Csp6I | GTAC | 5 cut(s) | 353, 408, 559, 758, 1212 |
| CviAII | CATG | 8 cut(s) | 210, 376, 571, 615, 826, 1006, 1298, 1498 |
| CviQI | GTAC | 5 cut(s) | 353, 408, 559, 758, 1212 |
| DdeI | CTNAG | 9 cut(s) | 113, 224, 715, 877, 1263, 1372, 1408, 1611, 1821 |
| DraIII | CACNNNGTG | 1 cut(s) | 1645 |
| EaeI | YGGCCR | 1 cut(s) | 649 |
| Eco130I | CCWWGG | 5 cut(s) | 209, 301, 614, 1005, 1765 |
| Eco47I | GGWCC | 1 cut(s) | 455 |
| Eco57I | CTGAAG | 1 cut(s) | 281 |
| Eco72I | CACGTG | 1 cut(s) | 419 |
| Eco88I | CYCGRG | 1 cut(s) | 590 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1326 |
| EcoO109I | RGGNCCY | 2 cut(s) | 455, 1664 |
| EcoRI | GAATTC | 1 cut(s) | 1585 |
| EcoRII | CCWGG | 5 cut(s) | 1024, 1339, 1555, 1666, 1808 |
| EcoT14I | CCWWGG | 5 cut(s) | 209, 301, 614, 1005, 1765 |
| EcoT22I | ATGCAT | 1 cut(s) | 377 |
| ErhI | CCWWGG | 5 cut(s) | 209, 301, 614, 1005, 1765 |
| FaeI | CATG | 8 cut(s) | 213, 379, 574, 618, 829, 1009, 1301, 1501 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1641, 1673 |
| FaqI | GGGAC | 1 cut(s) | 325 |
| FatI | CATG | 8 cut(s) | 209, 375, 570, 614, 825, 1005, 1297, 1497 |
| FauNDI | CATATG | 1 cut(s) | 953 |
| FbaI | TGATCA | 1 cut(s) | 172 |
| FblI | GTMKAC | 2 cut(s) | 400, 1021 |
| Fnu4HI | GCNGC | 4 cut(s) | 307, 712, 909, 912 |
| FokI | GGATG | 3 cut(s) | 279, 684, 1152 |
| Fsp4HI | GCNGC | 4 cut(s) | 307, 712, 909, 912 |
| FspBI | CTAG | 7 cut(s) | 296, 518, 701, 849, 1122, 1380, 1446 |
| GlaI | GCGC | 1 cut(s) | 1502 |
| GluI | GCNGC | 4 cut(s) | 307, 712, 909, 912 |
| HaeIII | GGCC | 3 cut(s) | 651, 854, 1666 |
| HapII | CCGG | 3 cut(s) | 435, 467, 870 |
| HhaI | GCGC | 1 cut(s) | 1503 |
| Hin1II | CATG | 8 cut(s) | 213, 379, 574, 618, 829, 1009, 1301, 1501 |
| Hin6I | GCGC | 1 cut(s) | 1501 |
| HinP1I | GCGC | 1 cut(s) | 1501 |
| HindIII | AAGCTT | 2 cut(s) | 79, 481 |
| HpaII | CCGG | 3 cut(s) | 435, 467, 870 |
| HphI | GGTGA | 2 cut(s) | 1073, 1721 |
| Hpy166II | GTNNAC | 7 cut(s) | 245, 401, 985, 1022, 1086, 1628, 1745 |
| Hpy188I | TCNGA | 6 cut(s) | 116, 227, 1110, 1235, 1459, 1591 |
| Hpy188III | TCNNGA | 8 cut(s) | 65, 134, 467, 539, 821, 870, 1352, 1401 |
| Hpy8I | GTNNAC | 7 cut(s) | 245, 401, 985, 1022, 1086, 1628, 1745 |
| HpyAV | CCTTC | 6 cut(s) | 118, 256, 323, 520, 701, 728 |
| HpyCH4III | ACNGT | 2 cut(s) | 200, 339 |
| HpyCH4IV | ACGT | 4 cut(s) | 16, 418, 760, 1741 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 735, 1035, 1532, 1557, 1566 |
| HpyF3I | CTNAG | 9 cut(s) | 113, 224, 715, 877, 1263, 1372, 1408, 1611, 1821 |
| HpySE526I | ACGT | 4 cut(s) | 16, 418, 760, 1741 |
| Hsp92II | CATG | 8 cut(s) | 213, 379, 574, 618, 829, 1009, 1301, 1501 |
| HspAI | GCGC | 1 cut(s) | 1501 |
| Kpn2I | TCCGGA | 2 cut(s) | 466, 869 |
| Ksp22I | TGATCA | 1 cut(s) | 172 |
| LmnI | GCTCC | 3 cut(s) | 812, 1207, 1343 |
| Lsp1109I | GCAGC | 4 cut(s) | 293, 698, 898, 920 |
| LweI | GCATC | 1 cut(s) | 1535 |
| MaeI | CTAG | 7 cut(s) | 296, 518, 701, 849, 1122, 1380, 1446 |
| MaeII | ACGT | 4 cut(s) | 16, 418, 760, 1741 |
| MaeIII | GTNAC | 6 cut(s) | 97, 255, 499, 1042, 1315, 1573 |
| MboII | GAAGA | 9 cut(s) | 3, 423, 478, 645, 1258, 1389, 1424, 1430, 1789 |
| MflI | RGATCY | 2 cut(s) | 872, 1403 |
| MhlI | GDGCHC | 2 cut(s) | 987, 1088 |
| MmeI | TCCRAC | 1 cut(s) | 1652 |
| Mph1103I | ATGCAT | 1 cut(s) | 377 |
| MroI | TCCGGA | 2 cut(s) | 466, 869 |
| MseI | TTAA | 5 cut(s) | 491, 662, 948, 1251, 1827 |
| MslI | CAYNNNNRTG | 1 cut(s) | 380 |
| MspA1I | CMGCKG | 5 cut(s) | 143, 548, 881, 911, 1412 |
| MspI | CCGG | 3 cut(s) | 435, 467, 870 |
| MspR9I | CCNGG | 5 cut(s) | 1026, 1341, 1557, 1668, 1810 |
| MvaI | CCWGG | 5 cut(s) | 1026, 1341, 1557, 1668, 1810 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 735, 1035, 1532, 1557, 1566 |
| NcoI | CCATGG | 3 cut(s) | 209, 614, 1005 |
| NdeI | CATATG | 1 cut(s) | 953 |
| NlaIII | CATG | 8 cut(s) | 213, 379, 574, 618, 829, 1009, 1301, 1501 |
| NlaIV | GGNNCC | 3 cut(s) | 597, 874, 1405 |
| NmuCI | GTSAC | 3 cut(s) | 97, 1042, 1573 |
| NsiI | ATGCAT | 1 cut(s) | 377 |
| NspI | RCATGY | 2 cut(s) | 829, 1501 |
| PaeR7I | CTCGAG | 1 cut(s) | 590 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 649 |
| PkrI | GCNGC | 4 cut(s) | 308, 713, 910, 913 |
| PmaCI | CACGTG | 1 cut(s) | 419 |
| PmlI | CACGTG | 1 cut(s) | 419 |
| Ppu21I | YACGTR | 2 cut(s) | 419, 761 |
| PpuMI | RGGWCCY | 1 cut(s) | 455 |
| PshBI | ATTAAT | 1 cut(s) | 1251 |
| Psp5II | RGGWCCY | 1 cut(s) | 455 |
| Psp6I | CCWGG | 5 cut(s) | 1024, 1339, 1555, 1666, 1808 |
| PspCI | CACGTG | 1 cut(s) | 419 |
| PspGI | CCWGG | 5 cut(s) | 1024, 1339, 1555, 1666, 1808 |
| PspN4I | GGNNCC | 3 cut(s) | 597, 874, 1405 |
| PspPI | GGNCC | 3 cut(s) | 455, 852, 1664 |
| PspPPI | RGGWCCY | 1 cut(s) | 455 |
| PspXI | VCTCGAGB | 1 cut(s) | 590 |
| PstI | CTGCAG | 2 cut(s) | 910, 1053 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1136, 1667 |
| PsuI | RGATCY | 2 cut(s) | 872, 1403 |
| PvuII | CAGCTG | 5 cut(s) | 143, 548, 881, 911, 1412 |
| RsaI | GTAC | 5 cut(s) | 354, 409, 560, 759, 1213 |
| RsaNI | GTAC | 5 cut(s) | 353, 408, 559, 758, 1212 |
| RseI | CAYNNNNRTG | 1 cut(s) | 380 |
| SaqAI | TTAA | 5 cut(s) | 491, 662, 948, 1251, 1827 |
| SatI | GCNGC | 4 cut(s) | 307, 712, 909, 912 |
| Sau96I | GGNCC | 3 cut(s) | 455, 852, 1664 |
| ScrFI | CCNGG | 5 cut(s) | 1026, 1341, 1557, 1668, 1810 |
| SduI | GDGCHC | 2 cut(s) | 987, 1088 |
| SfaNI | GCATC | 1 cut(s) | 1535 |
| SfcI | CTRYAG | 4 cut(s) | 906, 1018, 1049, 1580 |
| Sfr274I | CTCGAG | 1 cut(s) | 590 |
| SinI | GGWCC | 1 cut(s) | 455 |
| SlaI | CTCGAG | 1 cut(s) | 590 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 380 |
| SmlI | CTYRAG | 1 cut(s) | 590 |
| SmoI | CTYRAG | 1 cut(s) | 590 |
| SpeI | ACTAGT | 1 cut(s) | 1445 |
| SspMI | CTAG | 7 cut(s) | 296, 518, 701, 849, 1122, 1380, 1446 |
| StyD4I | CCNGG | 5 cut(s) | 1024, 1339, 1555, 1666, 1808 |
| StyI | CCWWGG | 5 cut(s) | 209, 301, 614, 1005, 1765 |
| TaaI | ACNGT | 2 cut(s) | 200, 339 |
| TaiI | ACGT | 4 cut(s) | 19, 421, 763, 1744 |
| TaqI | TCGA | 4 cut(s) | 219, 591, 994, 1194 |
| TatI | WGTACW | 1 cut(s) | 558 |
| Tru1I | TTAA | 5 cut(s) | 491, 662, 948, 1251, 1827 |
| Tru9I | TTAA | 5 cut(s) | 491, 662, 948, 1251, 1827 |
| TscAI | CASTG | 7 cut(s) | 321, 726, 776, 1093, 1543, 1619, 1630 |
| TseFI | GTSAC | 3 cut(s) | 97, 1042, 1573 |
| TseI | GCWGC | 4 cut(s) | 306, 711, 908, 911 |
| Tsp45I | GTSAC | 3 cut(s) | 97, 1042, 1573 |
| TspRI | CASTG | 7 cut(s) | 321, 726, 776, 1093, 1543, 1619, 1630 |
| VneI | GTGCAC | 2 cut(s) | 983, 1084 |
| VpaK11BI | GGWCC | 1 cut(s) | 455 |
| VspI | ATTAAT | 1 cut(s) | 1251 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1326 |
| XapI | RAATTY | 3 cut(s) | 59, 71, 1585 |
| XceI | RCATGY | 2 cut(s) | 829, 1501 |
| XhoI | CTCGAG | 1 cut(s) | 590 |
| XmiI | GTMKAC | 2 cut(s) | 400, 1021 |
| XspI | CTAG | 7 cut(s) | 296, 518, 701, 849, 1122, 1380, 1446 |
| Zsp2I | ATGCAT | 1 cut(s) | 377 |