B3 domain-containing
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 10 - 177 | 2.1e-50 | TIR domain |
| TIR_2 | PF13676 | 13 - 112 | 2.5e-15 | TIR domain |
| NB-ARC | PF00931 | 193 - 361 | 4.9e-19 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 430 - 497 | 1.7e-19 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 691 - 893 | 2.8e-12 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 723 - 793 | 3.2e-09 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_13 | PF23286 | 793 - 879 | 1.2e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 732 |
| AarI | CACCTGC | 1 cut(s) | 1452 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 401, 546 |
| Acc36I | ACCTGC | 1 cut(s) | 1452 |
| AccB1I | GGYRCC | 1 cut(s) | 298 |
| AccI | GTMKAC | 1 cut(s) | 1617 |
| AccII | CGCG | 1 cut(s) | 463 |
| AccIII | TCCGGA | 1 cut(s) | 2431 |
| AciI | CCGC | 7 cut(s) | 6, 118, 601, 775, 1350, 1483, 1859 |
| AclI | AACGTT | 1 cut(s) | 905 |
| AclWI | GGATC | 6 cut(s) | 314, 450, 582, 2127, 2176, 2189 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 3 cut(s) | 159, 1242, 2216 |
| AcuI | CTGAAG | 3 cut(s) | 156, 1057, 2043 |
| AfaI | GTAC | 2 cut(s) | 242, 1254 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 397, 1385, 1781 |
| AflII | CTTAAG | 3 cut(s) | 2141, 2351, 2633 |
| AjnI | CCWGG | 4 cut(s) | 413, 1022, 1504, 2221 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 912, 944 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1380, 1412 |
| Alw21I | GWGCWC | 5 cut(s) | 100, 144, 255, 1414, 2403 |
| Alw26I | GTCTC | 3 cut(s) | 404, 501, 1004 |
| AlwI | GGATC | 6 cut(s) | 314, 450, 582, 2127, 2176, 2189 |
| Aor13HI | TCCGGA | 1 cut(s) | 2431 |
| AoxI | GGCC | 2 cut(s) | 3, 1952 |
| ApeKI | GCWGC | 5 cut(s) | 286, 1207, 2157, 2409, 2691 |
| ApoI | RAATTY | 3 cut(s) | 159, 1242, 2216 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1329, 1361, 2547, 2579 |
| AseI | ATTAAT | 1 cut(s) | 1542 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2217, 2427 |
| AspLEI | GCGC | 1 cut(s) | 1515 |
| AspS9I | GGNCC | 3 cut(s) | 1953, 2391, 2673 |
| AsuHPI | GGTGA | 3 cut(s) | 773, 1339, 1742 |
| AsuII | TTCGAA | 1 cut(s) | 334 |
| AvaII | GGWCC | 2 cut(s) | 2391, 2673 |
| BaeGI | GKGCMC | 1 cut(s) | 303 |
| BamHI | GGATCC | 1 cut(s) | 2181 |
| BanI | GGYRCC | 1 cut(s) | 298 |
| BanII | GRGCYC | 6 cut(s) | 100, 144, 255, 1023, 1414, 2403 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 23, 55 |
| BbsI | GAAGAC | 1 cut(s) | 31 |
| Bbv12I | GWGCWC | 5 cut(s) | 100, 144, 255, 1414, 2403 |
| BbvI | GCAGC | 5 cut(s) | 298, 1194, 2144, 2396, 2678 |
| BceAI | ACGGC | 1 cut(s) | 1581 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 58, 92, 109, 143, 2542, 2576 |
| BciT130I | CCWGG | 4 cut(s) | 415, 1024, 1506, 2223 |
| BcoDI | GTCTC | 3 cut(s) | 404, 501, 1004 |
| BfmI | CTRYAG | 1 cut(s) | 2615 |
| BfrI | CTTAAG | 3 cut(s) | 2141, 2351, 2633 |
| BfuAI | ACCTGC | 1 cut(s) | 1452 |
| BglII | AGATCT | 1 cut(s) | 2611 |
| BisI | GCNGC | 6 cut(s) | 6, 287, 1208, 2158, 2410, 2692 |
| BlsI | GCNGC | 6 cut(s) | 7, 288, 1209, 2159, 2411, 2693 |
| Bme1390I | CCNGG | 4 cut(s) | 415, 1024, 1506, 2223 |
| Bme18I | GGWCC | 2 cut(s) | 2391, 2673 |
| BmgT120I | GGNCC | 3 cut(s) | 1953, 2391, 2673 |
| BmiI | GGNNCC | 6 cut(s) | 300, 841, 1955, 2183, 2393, 2675 |
| BmrFI | CCNGG | 4 cut(s) | 415, 1024, 1506, 2223 |
| BmrI | ACTGGG | 2 cut(s) | 1083, 2322 |
| BmsI | GCATC | 1 cut(s) | 1564 |
| BmuI | ACTGGG | 2 cut(s) | 1083, 2322 |
| BpiI | GAAGAC | 1 cut(s) | 31 |
| BpmI | CTGGAG | 4 cut(s) | 529, 1020, 1656, 1819 |
| Bpu14I | TTCGAA | 1 cut(s) | 334 |
| BpuEI | CTTGAG | 5 cut(s) | 1119, 1809, 2057, 2318, 2417 |
| Bsa29I | ATCGAT | 1 cut(s) | 129 |
| BsaBI | GATNNNNATC | 2 cut(s) | 530, 1542 |
| BsaI | GGTCTC | 1 cut(s) | 404 |
| BsaJI | CCNNGG | 3 cut(s) | 1022, 1505, 2222 |
| BsaWI | WCCGGW | 1 cut(s) | 2431 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 335, 365, 1629, 1659 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 397, 1385, 1781 |
| Bse1I | ACTGG | 6 cut(s) | 546, 858, 1089, 1195, 1639, 2317 |
| Bse3DI | GCAATG | 1 cut(s) | 22 |
| Bse8I | GATNNNNATC | 2 cut(s) | 530, 1542 |
| BseAI | TCCGGA | 1 cut(s) | 2431 |
| BseBI | CCWGG | 4 cut(s) | 415, 1024, 1506, 2223 |
| BseCI | ATCGAT | 1 cut(s) | 129 |
| BseDI | CCNNGG | 3 cut(s) | 1022, 1505, 2222 |
| BseGI | GGATG | 7 cut(s) | 481, 531, 1255, 1579, 1859, 2080, 2084 |
| BseJI | GATNNNNATC | 2 cut(s) | 530, 1542 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 397, 1385, 1781 |
| BseMI | GCAATG | 1 cut(s) | 22 |
| BseMII | CTCAG | 2 cut(s) | 58, 2223 |
| BseNI | ACTGG | 6 cut(s) | 546, 858, 1089, 1195, 1639, 2317 |
| BseSI | GKGCMC | 1 cut(s) | 303 |
| BseXI | GCAGC | 5 cut(s) | 298, 1194, 2144, 2396, 2678 |
| BseYI | CCCAGC | 1 cut(s) | 453 |
| BsgI | GTGCAG | 1 cut(s) | 408 |
| Bsh1236I | CGCG | 1 cut(s) | 463 |
| BshFI | GGCC | 2 cut(s) | 5, 1954 |
| BshNI | GGYRCC | 1 cut(s) | 298 |
| BshVI | ATCGAT | 1 cut(s) | 129 |
| BsiHKAI | GWGCWC | 5 cut(s) | 100, 144, 255, 1414, 2403 |
| BsiSI | CCGG | 1 cut(s) | 2432 |
| BslFI | GGGAC | 3 cut(s) | 1820, 2284, 2494 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 397, 1385, 1781 |
| BsmAI | GTCTC | 3 cut(s) | 404, 501, 1004 |
| BsmFI | GGGAC | 3 cut(s) | 1820, 2284, 2494 |
| BsmI | GAATGC | 6 cut(s) | 275, 1066, 1589, 2160, 2370, 2652 |
| BsnI | GGCC | 2 cut(s) | 5, 1954 |
| Bso31I | GGTCTC | 1 cut(s) | 404 |
| Bsp119I | TTCGAA | 1 cut(s) | 334 |
| Bsp1286I | GDGCHC | 7 cut(s) | 100, 144, 255, 303, 1023, 1414, 2403 |
| Bsp13I | TCCGGA | 1 cut(s) | 2431 |
| Bsp143I | GATC | 8 cut(s) | 319, 442, 574, 1105, 2119, 2181, 2512, 2611 |
| Bsp68I | TCGCGA | 1 cut(s) | 463 |
| BspACI | CCGC | 7 cut(s) | 6, 118, 601, 775, 1350, 1483, 1859 |
| BspANI | GGCC | 2 cut(s) | 5, 1954 |
| BspCNI | CTCAG | 2 cut(s) | 57, 2224 |
| BspDI | ATCGAT | 1 cut(s) | 129 |
| BspEI | TCCGGA | 1 cut(s) | 2431 |
| BspFNI | CGCG | 1 cut(s) | 463 |
| BspHI | TCATGA | 2 cut(s) | 1671, 2448 |
| BspLI | GGNNCC | 6 cut(s) | 300, 841, 1955, 2183, 2393, 2675 |
| BspMAI | CTGCAG | 1 cut(s) | 2619 |
| BspMI | ACCTGC | 1 cut(s) | 1452 |
| BspPI | GGATC | 6 cut(s) | 314, 450, 582, 2127, 2176, 2189 |
| BspQI | GCTCTTC | 1 cut(s) | 132 |
| BspT104I | TTCGAA | 1 cut(s) | 334 |
| BspT107I | GGYRCC | 1 cut(s) | 298 |
| BspTI | CTTAAG | 3 cut(s) | 2141, 2351, 2633 |
| BspTNI | GGTCTC | 1 cut(s) | 404 |
| BsrDI | GCAATG | 1 cut(s) | 22 |
| BsrI | ACTGG | 6 cut(s) | 546, 858, 1089, 1195, 1639, 2317 |
| BssECI | CCNNGG | 3 cut(s) | 1022, 1505, 2222 |
| BssMI | GATC | 8 cut(s) | 319, 442, 574, 1105, 2119, 2181, 2512, 2611 |
| Bst2UI | CCWGG | 4 cut(s) | 415, 1024, 1506, 2223 |
| Bst4CI | ACNGT | 3 cut(s) | 1364, 1730, 2579 |
| Bst6I | CTCTTC | 3 cut(s) | 132, 2391, 2673 |
| BstAFI | CTTAAG | 3 cut(s) | 2141, 2351, 2633 |
| BstBI | TTCGAA | 1 cut(s) | 334 |
| BstC8I | GCNNGC | 2 cut(s) | 1119, 2135 |
| BstDEI | CTNAG | 4 cut(s) | 44, 1256, 1661, 2232 |
| BstEII | GGTNACC | 1 cut(s) | 1703 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 395 |
| BstF5I | GGATG | 7 cut(s) | 481, 531, 1255, 1579, 1859, 2080, 2084 |
| BstFNI | CGCG | 1 cut(s) | 463 |
| BstHHI | GCGC | 1 cut(s) | 1515 |
| BstKTI | GATC | 8 cut(s) | 322, 445, 577, 1108, 2122, 2184, 2515, 2614 |
| BstMAI | GTCTC | 3 cut(s) | 404, 501, 1004 |
| BstMBI | GATC | 8 cut(s) | 319, 442, 574, 1105, 2119, 2181, 2512, 2611 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1574, 2254, 2464 |
| BstNI | CCWGG | 4 cut(s) | 415, 1024, 1506, 2223 |
| BstNSI | RCATGY | 2 cut(s) | 1317, 1915 |
| BstPI | GGTNACC | 1 cut(s) | 1703 |
| BstSCI | CCNGG | 4 cut(s) | 413, 1022, 1504, 2221 |
| BstSFI | CTRYAG | 1 cut(s) | 2615 |
| BstSLI | GKGCMC | 1 cut(s) | 303 |
| BstUI | CGCG | 1 cut(s) | 463 |
| BstV1I | GCAGC | 5 cut(s) | 298, 1194, 2144, 2396, 2678 |
| BstV2I | GAAGAC | 1 cut(s) | 31 |
| BstX2I | RGATCY | 5 cut(s) | 319, 442, 2119, 2181, 2611 |
| BstYI | RGATCY | 5 cut(s) | 319, 442, 2119, 2181, 2611 |
| Bsu15I | ATCGAT | 1 cut(s) | 129 |
| BsuRI | GGCC | 2 cut(s) | 5, 1954 |
| BsuTUI | ATCGAT | 1 cut(s) | 129 |
| BtsCI | GGATG | 7 cut(s) | 481, 531, 1255, 1579, 1859, 2080, 2084 |
| BtsIMutI | CAGTG | 2 cut(s) | 1202, 2310 |
| BtuMI | TCGCGA | 1 cut(s) | 463 |
| BveI | ACCTGC | 1 cut(s) | 1452 |
| Cac8I | GCNNGC | 2 cut(s) | 1119, 2135 |
| CciI | TCATGA | 2 cut(s) | 1671, 2448 |
| CfoI | GCGC | 1 cut(s) | 1515 |
| Cfr13I | GGNCC | 3 cut(s) | 1953, 2391, 2673 |
| ClaI | ATCGAT | 1 cut(s) | 129 |
| Csp6I | GTAC | 2 cut(s) | 241, 1253 |
| CviAII | CATG | 9 cut(s) | 265, 374, 1314, 1448, 1547, 1672, 1850, 1912, 2449 |
| CviQI | GTAC | 2 cut(s) | 241, 1253 |
| DdeI | CTNAG | 4 cut(s) | 44, 1256, 1661, 2232 |
| DpnI | GATC | 8 cut(s) | 321, 444, 576, 1107, 2121, 2183, 2514, 2613 |
| DpnII | GATC | 8 cut(s) | 319, 442, 574, 1105, 2119, 2181, 2512, 2611 |
| DraI | TTTAAA | 3 cut(s) | 1032, 1744, 2328 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 401, 546 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 401, 546 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 3 cut(s) | 132, 2391, 2673 |
| EarI | CTCTTC | 3 cut(s) | 132, 2391, 2673 |
| EciI | GGCGGA | 1 cut(s) | 1472 |
| Ecl136II | GAGCTC | 5 cut(s) | 98, 142, 253, 1412, 2401 |
| Eco24I | GRGCYC | 6 cut(s) | 100, 144, 255, 1023, 1414, 2403 |
| Eco31I | GGTCTC | 1 cut(s) | 404 |
| Eco47I | GGWCC | 2 cut(s) | 2391, 2673 |
| Eco53kI | GAGCTC | 5 cut(s) | 98, 142, 253, 1412, 2401 |
| Eco57I | CTGAAG | 3 cut(s) | 156, 1057, 2043 |
| Eco91I | GGTNACC | 1 cut(s) | 1703 |
| EcoICRI | GAGCTC | 5 cut(s) | 98, 142, 253, 1412, 2401 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 395 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1953 |
| EcoO65I | GGTNACC | 1 cut(s) | 1703 |
| EcoRII | CCWGG | 4 cut(s) | 413, 1022, 1504, 2221 |
| EcoT38I | GRGCYC | 6 cut(s) | 100, 144, 255, 1023, 1414, 2403 |
| FaeI | CATG | 9 cut(s) | 268, 377, 1317, 1451, 1550, 1675, 1853, 1915, 2452 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 389, 421, 912, 944, 1055, 1087 |
| FaqI | GGGAC | 3 cut(s) | 1820, 2284, 2494 |
| FatI | CATG | 9 cut(s) | 264, 373, 1313, 1447, 1546, 1671, 1849, 1911, 2448 |
| FauI | CCCGC | 1 cut(s) | 768 |
| FauNDI | CATATG | 4 cut(s) | 1015, 2166, 2376, 2658 |
| FblI | GTMKAC | 1 cut(s) | 1617 |
| Fnu4HI | GCNGC | 6 cut(s) | 6, 287, 1208, 2158, 2410, 2692 |
| FokI | GGATG | 7 cut(s) | 488, 518, 1262, 1586, 1866, 2067, 2071 |
| FriOI | GRGCYC | 6 cut(s) | 100, 144, 255, 1023, 1414, 2403 |
| Fsp4HI | GCNGC | 6 cut(s) | 6, 287, 1208, 2158, 2410, 2692 |
| GlaI | GCGC | 1 cut(s) | 1514 |
| GluI | GCNGC | 6 cut(s) | 6, 287, 1208, 2158, 2410, 2692 |
| GsaI | CCCAGC | 1 cut(s) | 457 |
| GsuI | CTGGAG | 4 cut(s) | 529, 1020, 1656, 1819 |
| HaeIII | GGCC | 2 cut(s) | 5, 1954 |
| HapII | CCGG | 1 cut(s) | 2432 |
| HhaI | GCGC | 1 cut(s) | 1515 |
| Hin1II | CATG | 9 cut(s) | 268, 377, 1317, 1451, 1550, 1675, 1853, 1915, 2452 |
| Hin6I | GCGC | 1 cut(s) | 1513 |
| HinP1I | GCGC | 1 cut(s) | 1513 |
| HincII | GTYRAC | 3 cut(s) | 184, 1405, 1618 |
| HindII | GTYRAC | 3 cut(s) | 184, 1405, 1618 |
| HindIII | AAGCTT | 1 cut(s) | 360 |
| HpaII | CCGG | 1 cut(s) | 2432 |
| HphI | GGTGA | 3 cut(s) | 773, 1339, 1742 |
| Hpy166II | GTNNAC | 6 cut(s) | 184, 1190, 1405, 1441, 1618, 1790 |
| Hpy188I | TCNGA | 8 cut(s) | 136, 166, 328, 1076, 1968, 2233, 2391, 2673 |
| Hpy8I | GTNNAC | 6 cut(s) | 184, 1190, 1405, 1441, 1618, 1790 |
| Hpy99I | CGWCG | 2 cut(s) | 1573, 1724 |
| HpyCH4III | ACNGT | 3 cut(s) | 1364, 1730, 2579 |
| HpyCH4IV | ACGT | 1 cut(s) | 905 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1574, 2254, 2464 |
| HpyF3I | CTNAG | 4 cut(s) | 44, 1256, 1661, 2232 |
| HpySE526I | ACGT | 1 cut(s) | 905 |
| Hsp92II | CATG | 9 cut(s) | 268, 377, 1317, 1451, 1550, 1675, 1853, 1915, 2452 |
| HspAI | GCGC | 1 cut(s) | 1513 |
| Kpn2I | TCCGGA | 1 cut(s) | 2431 |
| Kzo9I | GATC | 8 cut(s) | 319, 442, 574, 1105, 2119, 2181, 2512, 2611 |
| LguI | GCTCTTC | 1 cut(s) | 132 |
| LmnI | GCTCC | 4 cut(s) | 147, 1166, 1637, 2455 |
| Lsp1109I | GCAGC | 5 cut(s) | 298, 1194, 2144, 2396, 2678 |
| LweI | GCATC | 1 cut(s) | 1564 |
| MaeII | ACGT | 1 cut(s) | 905 |
| MaeIII | GTNAC | 6 cut(s) | 168, 386, 970, 1345, 1703, 1922 |
| MalI | GATC | 8 cut(s) | 321, 444, 576, 1107, 2121, 2183, 2514, 2613 |
| MboI | GATC | 8 cut(s) | 319, 442, 574, 1105, 2119, 2181, 2512, 2611 |
| MfeI | CAATTG | 1 cut(s) | 2508 |
| MflI | RGATCY | 5 cut(s) | 319, 442, 2119, 2181, 2611 |
| MhlI | GDGCHC | 7 cut(s) | 100, 144, 255, 303, 1023, 1414, 2403 |
| MlyI | GAGTC | 4 cut(s) | 1446, 1549, 2350, 2632 |
| MmeI | TCCRAC | 1 cut(s) | 616 |
| MroI | TCCGGA | 1 cut(s) | 2431 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2217, 2427 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1446, 2165, 2375, 2657 |
| MspCI | CTTAAG | 3 cut(s) | 2141, 2351, 2633 |
| MspI | CCGG | 1 cut(s) | 2432 |
| MspR9I | CCNGG | 4 cut(s) | 415, 1024, 1506, 2223 |
| MunI | CAATTG | 1 cut(s) | 2508 |
| Mva1269I | GAATGC | 6 cut(s) | 275, 1066, 1589, 2160, 2370, 2652 |
| MvaI | CCWGG | 4 cut(s) | 415, 1024, 1506, 2223 |
| MvnI | CGCG | 1 cut(s) | 463 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1574, 2254, 2464 |
| NdeI | CATATG | 4 cut(s) | 1015, 2166, 2376, 2658 |
| NdeII | GATC | 8 cut(s) | 319, 442, 574, 1105, 2119, 2181, 2512, 2611 |
| NlaIII | CATG | 9 cut(s) | 268, 377, 1317, 1451, 1550, 1675, 1853, 1915, 2452 |
| NlaIV | GGNNCC | 6 cut(s) | 300, 841, 1955, 2183, 2393, 2675 |
| NmuCI | GTSAC | 2 cut(s) | 1345, 1922 |
| NruI | TCGCGA | 1 cut(s) | 463 |
| NspI | RCATGY | 2 cut(s) | 1317, 1915 |
| NspV | TTCGAA | 1 cut(s) | 334 |
| PagI | TCATGA | 2 cut(s) | 1671, 2448 |
| PaqCI | CACCTGC | 1 cut(s) | 1452 |
| PciSI | GCTCTTC | 1 cut(s) | 132 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 183, 1716 |
| PctI | GAATGC | 6 cut(s) | 275, 1066, 1589, 2160, 2370, 2652 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2217, 2427 |
| PkrI | GCNGC | 6 cut(s) | 7, 288, 1209, 2159, 2411, 2693 |
| PleI | GAGTC | 4 cut(s) | 1445, 1549, 2350, 2632 |
| PpsI | GAGTC | 4 cut(s) | 1445, 1549, 2350, 2632 |
| PshBI | ATTAAT | 1 cut(s) | 1542 |
| PsiI | TTATAA | 1 cut(s) | 732 |
| Psp124BI | GAGCTC | 5 cut(s) | 100, 144, 255, 1414, 2403 |
| Psp1406I | AACGTT | 1 cut(s) | 905 |
| Psp6I | CCWGG | 4 cut(s) | 413, 1022, 1504, 2221 |
| PspEI | GGTNACC | 1 cut(s) | 1703 |
| PspFI | CCCAGC | 1 cut(s) | 453 |
| PspGI | CCWGG | 4 cut(s) | 413, 1022, 1504, 2221 |
| PspN4I | GGNNCC | 6 cut(s) | 300, 841, 1955, 2183, 2393, 2675 |
| PspPI | GGNCC | 3 cut(s) | 1953, 2391, 2673 |
| PstI | CTGCAG | 1 cut(s) | 2619 |
| PsuI | RGATCY | 5 cut(s) | 319, 442, 2119, 2181, 2611 |
| RruI | TCGCGA | 1 cut(s) | 463 |
| RsaI | GTAC | 2 cut(s) | 242, 1254 |
| RsaNI | GTAC | 2 cut(s) | 241, 1253 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1446, 2165, 2375, 2657 |
| SacI | GAGCTC | 5 cut(s) | 100, 144, 255, 1414, 2403 |
| SalI | GTCGAC | 1 cut(s) | 1616 |
| SapI | GCTCTTC | 1 cut(s) | 132 |
| SatI | GCNGC | 6 cut(s) | 6, 287, 1208, 2158, 2410, 2692 |
| Sau3AI | GATC | 8 cut(s) | 319, 442, 574, 1105, 2119, 2181, 2512, 2611 |
| Sau96I | GGNCC | 3 cut(s) | 1953, 2391, 2673 |
| SchI | GAGTC | 4 cut(s) | 1446, 1549, 2350, 2632 |
| ScrFI | CCNGG | 4 cut(s) | 415, 1024, 1506, 2223 |
| SduI | GDGCHC | 7 cut(s) | 100, 144, 255, 303, 1023, 1414, 2403 |
| SfaNI | GCATC | 1 cut(s) | 1564 |
| SfcI | CTRYAG | 1 cut(s) | 2615 |
| SfuI | TTCGAA | 1 cut(s) | 334 |
| SinI | GGWCC | 2 cut(s) | 2391, 2673 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1446, 2165, 2375, 2657 |
| SmlI | CTYRAG | 8 cut(s) | 1134, 1824, 2036, 2141, 2333, 2351, 2396, 2633 |
| SmoI | CTYRAG | 8 cut(s) | 1134, 1824, 2036, 2141, 2333, 2351, 2396, 2633 |
| SsiI | CCGC | 7 cut(s) | 6, 118, 601, 775, 1350, 1483, 1859 |
| SstI | GAGCTC | 5 cut(s) | 100, 144, 255, 1414, 2403 |
| StyD4I | CCNGG | 4 cut(s) | 413, 1022, 1504, 2221 |
| TaaI | ACNGT | 3 cut(s) | 1364, 1730, 2579 |
| TaiI | ACGT | 1 cut(s) | 908 |
| TatI | WGTACW | 1 cut(s) | 1252 |
| TauI | GCSGC | 1 cut(s) | 8 |
| TscAI | CASTG | 2 cut(s) | 1202, 2317 |
| TseFI | GTSAC | 2 cut(s) | 1345, 1922 |
| TseI | GCWGC | 5 cut(s) | 286, 1207, 2157, 2409, 2691 |
| Tsp45I | GTSAC | 2 cut(s) | 1345, 1922 |
| TspGWI | ACGGA | 2 cut(s) | 455, 1586 |
| TspRI | CASTG | 2 cut(s) | 1202, 2317 |
| Vha464I | CTTAAG | 3 cut(s) | 2141, 2351, 2633 |
| VpaK11BI | GGWCC | 2 cut(s) | 2391, 2673 |
| VspI | ATTAAT | 1 cut(s) | 1542 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 395 |
| XapI | RAATTY | 3 cut(s) | 159, 1242, 2216 |
| XbaI | TCTAGA | 3 cut(s) | 1303, 1357, 2608 |
| XceI | RCATGY | 2 cut(s) | 1317, 1915 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 850 |
| XmiI | GTMKAC | 1 cut(s) | 1617 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2217, 2427 |