Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Forward (+)

23308817 .. 23310758

Gene Structure 1942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g32411.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGGGGAGAGAAACAAAAACGGAAAACGACCTGCCGTTTCTGAGAGGTCTCCTGGGTTTTGCTTGAGGATTCAGAGCCGTGAGGATCTCAAAGATGGGAAGAAGGAGATTCCGCCTGCAGCTGTGAGGAAGTATGGAGATCAAATAGCAGACCATATATTCCTCAAGGTTCCCAATTGTGGAACCCATTGGAAAATAGAATTGAGAACATCACCTCGTCGTGACCGGATGTGGTTAGAGAAGGGATGGGAAGAGCTTGCTAGCTTTTACTTACTGGACCAAGGTGACTCGGCAACCTTCACTGCTGAAGGCGAAGATGCTCATTTCAGAATACGCATCTTTAGTTGGGATGATATGGAAATATATTACCCTATTCGTGGAGGAGGAGCTGATCTCAGCAGACCCAAGAGGAAAGAAACGAGAGCTGAAGTTGAAGCTGAAGCTGGAGCCATATCAGTTTCCGCTGGATCCTCTGCTGATGAACACCAAAACGATATTTCCAAAGTGAGCAGTTTCAGATCTGACAGGCCATGTCTTAATGTCCCAATCACCGCCACATCCTTAACCACCCGTGTGTTCATAAATTCAGCTTTTGCCTTGGAACATTTCTGTAAAGATGGCTCTTGTTGCGACCTGACCTTACAGAACACTCTAGGTGACACTACTTGGACAGTTCAGTGCATTTCTTACGCAATAAGTGATGGAAGAATGCGAACGGTATTATCTGGAGCTGGTTGGAAATCCTTTAGGCAGGACAATCTTCTAGAAGAGGGTGACGTCTTAGTGTTAGAGGTGATAGAGGAACGTAGGTGCCGAGTTTCAATAATCCGAGTTCAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

281

Amino Acids

31.6

Weight (kDa)

6.55

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	29 - 115	7.2e-10	B3 DNA binding domain
B3	PF02362	190 - 278	2.4e-10	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	780
Acc36I	ACCTGC	1 cut(s)	40
AccB1I	GGYRCC	1 cut(s)	810
AciI	CCGC	3 cut(s)	113, 462, 552
AclWI	GGATC	3 cut(s)	93, 462, 475
AcsI	RAATTY	1 cut(s)	583
AcuI	CTGAAG	3 cut(s)	327, 447, 459
AcyI	GRCGYC	1 cut(s)	777
AfiI	CCNNNNNNNGG	2 cut(s)	179, 377
AgsI	TTSAA	3 cut(s)	434, 822, 836
AjnI	CCWGG	1 cut(s)	52
AleI	CACNNNNGTG	1 cut(s)	572
AluBI	AGCT	9 cut(s)	122, 256, 264, 389, 425, 437, 443, 590, 731
AluI	AGCT	9 cut(s)	122, 256, 264, 389, 425, 437, 443, 590, 731
Alw26I	GTCTC	1 cut(s)	54
AlwI	GGATC	3 cut(s)	93, 462, 475
AoxI	GGCC	1 cut(s)	527
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	1 cut(s)	583
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	6 cut(s)	204, 296, 541, 668, 785, 805
AsuNHI	GCTAGC	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	277
BamHI	GGATCC	1 cut(s)	467
BanI	GGYRCC	1 cut(s)	810
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	4 cut(s)	89, 240, 611, 695
BceAI	ACGGC	2 cut(s)	20, 63
BciT130I	CCWGG	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	3 cut(s)	261, 653, 764
BfmI	CTRYAG	1 cut(s)	117
BfuAI	ACCTGC	1 cut(s)	40
BglII	AGATCT	1 cut(s)	518
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	54
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	5 cut(s)	171, 184, 448, 469, 812
BmrFI	CCNGG	1 cut(s)	54
BmsI	GCATC	2 cut(s)	307, 345
BmtI	GCTAGC	1 cut(s)	264
BplI	GAGNNNNNCTC	2 cut(s)	378, 410
BpmI	CTGGAG	2 cut(s)	465, 747
BpuEI	CTTGAG	2 cut(s)	85, 149
BsaHI	GRCGYC	1 cut(s)	777
BsaI	GGTCTC	1 cut(s)	54
BsaJI	CCNNGG	3 cut(s)	53, 280, 597
BsaWI	WCCGGW	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 377
Bse1I	ACTGG	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	54
BseDI	CCNNGG	3 cut(s)	53, 280, 597
BseGI	GGATG	4 cut(s)	234, 251, 355, 557
BseLI	CCNNNNNNNGG	2 cut(s)	179, 377
BseMII	CTCAG	2 cut(s)	33, 409
BseNI	ACTGG	1 cut(s)	279
BseRI	GAGGAG	2 cut(s)	396, 399
BseXI	GCAGC	1 cut(s)	131
BshFI	GGCC	1 cut(s)	529
BshNI	GGYRCC	1 cut(s)	810
BsiSI	CCGG	1 cut(s)	226
BslFI	GGGAC	1 cut(s)	527
BslI	CCNNNNNNNGG	2 cut(s)	179, 377
BsmAI	GTCTC	1 cut(s)	54
BsmFI	GGGAC	1 cut(s)	527
BsmI	GAATGC	1 cut(s)	714
BsnI	GGCC	1 cut(s)	529
Bso31I	GGTCTC	1 cut(s)	54
Bsp143I	GATC	5 cut(s)	85, 139, 391, 467, 518
BspACI	CCGC	3 cut(s)	113, 462, 552
BspANI	GGCC	1 cut(s)	529
BspCNI	CTCAG	2 cut(s)	34, 408
BspLI	GGNNCC	5 cut(s)	171, 184, 448, 469, 812
BspMAI	CTGCAG	1 cut(s)	121
BspMI	ACCTGC	1 cut(s)	40
BspOI	GCTAGC	1 cut(s)	264
BspPI	GGATC	3 cut(s)	93, 462, 475
BspQI	GCTCTTC	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	810
BspTNI	GGTCTC	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	279
BssECI	CCNNGG	3 cut(s)	53, 280, 597
BssMI	GATC	5 cut(s)	85, 139, 391, 467, 518
BssNI	GRCGYC	1 cut(s)	777
BssT1I	CCWWGG	2 cut(s)	280, 597
Bst2UI	CCWGG	1 cut(s)	54
Bst4CI	ACNGT	2 cut(s)	673, 718
Bst6I	CTCTTC	2 cut(s)	246, 762
BstACI	GRCGYC	1 cut(s)	777
BstC8I	GCNNGC	3 cut(s)	117, 258, 262
BstDEI	CTNAG	3 cut(s)	42, 395, 781
BstF5I	GGATG	4 cut(s)	234, 251, 355, 557
BstKTI	GATC	5 cut(s)	88, 142, 394, 470, 521
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	5 cut(s)	85, 139, 391, 467, 518
BstMWI	GCNNNNNNNGC	1 cut(s)	627
BstNI	CCWGG	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	52
BstSFI	CTRYAG	1 cut(s)	117
BstV1I	GCAGC	1 cut(s)	131
BstX2I	RGATCY	3 cut(s)	85, 467, 518
BstYI	RGATCY	3 cut(s)	85, 467, 518
BsuRI	GGCC	1 cut(s)	529
BtsCI	GGATG	4 cut(s)	234, 251, 355, 557
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	2 cut(s)	300, 683
BveI	ACCTGC	1 cut(s)	40
Cac8I	GCNNGC	3 cut(s)	117, 258, 262
Cfr13I	GGNCC	1 cut(s)	277
CviAII	CATG	1 cut(s)	531
DdeI	CTNAG	3 cut(s)	42, 395, 781
DpnI	GATC	5 cut(s)	87, 141, 393, 469, 520
DpnII	GATC	5 cut(s)	85, 139, 391, 467, 518
Eam1104I	CTCTTC	2 cut(s)	246, 762
EarI	CTCTTC	2 cut(s)	246, 762
EciI	GGCGGA	1 cut(s)	102
Eco130I	CCWWGG	2 cut(s)	280, 597
Eco31I	GGTCTC	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	277
Eco57I	CTGAAG	3 cut(s)	327, 447, 459
EcoRII	CCWGG	1 cut(s)	52
EcoT14I	CCWWGG	2 cut(s)	280, 597
ErhI	CCWWGG	2 cut(s)	280, 597
FaeI	CATG	1 cut(s)	534
FaiI	YATR	8 cut(s)	135, 156, 158, 356, 364, 452, 532, 581
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	1 cut(s)	530
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	4 cut(s)	241, 258, 362, 544
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	3 cut(s)	261, 653, 764
GluI	GCNGC	1 cut(s)	120
GsuI	CTGGAG	2 cut(s)	465, 747
HaeIII	GGCC	1 cut(s)	529
HapII	CCGG	1 cut(s)	226
Hin1I	GRCGYC	1 cut(s)	777
Hin1II	CATG	1 cut(s)	534
HinfI	GANTC	3 cut(s)	70, 109, 287
HpaII	CCGG	1 cut(s)	226
HphI	GGTGA	6 cut(s)	204, 296, 541, 668, 785, 805
Hpy188I	TCNGA	6 cut(s)	43, 75, 329, 518, 523, 830
Hpy188III	TCNNGA	3 cut(s)	221, 726, 764
Hpy99I	CGWCG	1 cut(s)	222
HpyAV	CCTTC	4 cut(s)	97, 235, 302, 307
HpyCH4III	ACNGT	2 cut(s)	673, 718
HpyCH4IV	ACGT	2 cut(s)	777, 805
HpyCH4V	TGCA	2 cut(s)	119, 681
HpyF10VI	GCNNNNNNNGC	1 cut(s)	627
HpyF3I	CTNAG	3 cut(s)	42, 395, 781
HpySE526I	ACGT	2 cut(s)	777, 805
Hsp92I	GRCGYC	1 cut(s)	777
Hsp92II	CATG	1 cut(s)	534
Kzo9I	GATC	5 cut(s)	85, 139, 391, 467, 518
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	3 cut(s)	386, 446, 728
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	2 cut(s)	307, 345
MaeI	CTAG	3 cut(s)	261, 653, 764
MaeII	ACGT	2 cut(s)	777, 805
MaeIII	GTNAC	4 cut(s)	221, 284, 656, 773
MalI	GATC	5 cut(s)	87, 141, 393, 469, 520
MboI	GATC	5 cut(s)	85, 139, 391, 467, 518
MboII	GAAGA	6 cut(s)	112, 263, 326, 717, 752, 779
MfeI	CAATTG	1 cut(s)	175
MflI	RGATCY	3 cut(s)	85, 467, 518
MluCI	AATT	3 cut(s)	175, 200, 583
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	716
MseI	TTAA	2 cut(s)	537, 563
MslI	CAYNNNNRTG	1 cut(s)	572
MspA1I	CMGCKG	2 cut(s)	122, 464
MspI	CCGG	1 cut(s)	226
MspR9I	CCNGG	1 cut(s)	54
MunI	CAATTG	1 cut(s)	175
Mva1269I	GAATGC	1 cut(s)	714
MvaI	CCWGG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	627
NdeII	GATC	5 cut(s)	85, 139, 391, 467, 518
NheI	GCTAGC	1 cut(s)	260
NlaIII	CATG	1 cut(s)	534
NlaIV	GGNNCC	5 cut(s)	171, 184, 448, 469, 812
NmeAIII	GCCGAG	2 cut(s)	269, 839
NmuCI	GTSAC	4 cut(s)	221, 284, 656, 773
OliI	CACNNNNGTG	1 cut(s)	572
PciSI	GCTCTTC	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	1 cut(s)	811
PctI	GAATGC	1 cut(s)	714
PfeI	GAWTC	2 cut(s)	70, 109
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
Psp6I	CCWGG	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	52
PspN4I	GGNNCC	5 cut(s)	171, 184, 448, 469, 812
PspPI	GGNCC	1 cut(s)	277
PstI	CTGCAG	1 cut(s)	121
PsuI	RGATCY	3 cut(s)	85, 467, 518
PvuII	CAGCTG	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	572
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	2 cut(s)	537, 563
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	5 cut(s)	85, 139, 391, 467, 518
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	1 cut(s)	54
SfaNI	GCATC	2 cut(s)	307, 345
SfcI	CTRYAG	1 cut(s)	117
SinI	GGWCC	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	572
SmlI	CTYRAG	2 cut(s)	64, 164
SmoI	CTYRAG	2 cut(s)	64, 164
Sse9I	AATT	3 cut(s)	175, 200, 583
SsiI	CCGC	3 cut(s)	113, 462, 552
SspMI	CTAG	3 cut(s)	261, 653, 764
StyD4I	CCNGG	1 cut(s)	52
StyI	CCWWGG	2 cut(s)	280, 597
TaaI	ACNGT	2 cut(s)	673, 718
TaiI	ACGT	2 cut(s)	780, 808
TasI	AATT	3 cut(s)	175, 200, 583
TfiI	GAWTC	2 cut(s)	70, 109
Tru1I	TTAA	2 cut(s)	537, 563
Tru9I	TTAA	2 cut(s)	537, 563
TscAI	CASTG	2 cut(s)	307, 683
TseFI	GTSAC	4 cut(s)	221, 284, 656, 773
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	4 cut(s)	221, 284, 656, 773
TspDTI	ATGAA	2 cut(s)	495, 568
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	2 cut(s)	307, 683
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	1 cut(s)	583
XbaI	TCTAGA	1 cut(s)	763
XspI	CTAG	3 cut(s)	261, 653, 764
ZraI	GACGTC	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.