Rorug01G0432800

B3 domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000407
Physical Location & Seq
Forward (+)
53090431 .. 53093152
2722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0432800.1

Sequence Viewer

Length: 2325 bp
ATGAAAATGGCTCAAAAACCAGTGATCAAATGGCTGGTTCTGATTCTAACAAGCTGTGTCTTCTTCAGCATTGCCCTCTCTGCAAAAACCCAAACTTACATCATCCAAATGGACAAGTCCGCCAAGCCTGAATCTTTCACCACCCACCTCGACTGGTACTCCTCCAAAGTAAACTCAGTACTCAACAAACCAGAAAAAGGAGGCGCTCAAAACCAAGACAGAATCATTTACACTTACCAAACCGCCTTTCATGGCGTCGCAGCTCAGCTGAGCAAACAAGAAACCGATCTACTAGAGCAACAAGATGGAGTCTTGGCTATATTCCCAGAACAAAAGTACCAGCTCCACACCACCAGAAGTCCTCTGTTTCTCGGGCTCGAACCACACGACAGCACCACCGACAACGTCTGGTCCCAGCGAGTCTCCGACCATGACGTCATCGTCGGAGTACTCGACACGGGGGTCTGGCCGGAGAGCCAGAGCTTCAACGACACCGGAATGTCTCCGGTGCCGCGGCGCTGGAGAGGCGCGTGCGAGACCGGCCGCGGCTTCACAAAAAGCAACTGCAACAGGAAAATCGTCGGCGCCAGAATCTTCCACCGGGGGTACGAGGCCGCCACCGGAAAAATCAACGAGCAGACGGAGTACAAGTCCCCGAGGGACCAAGACGGACACGGGACCCATACCGCCGCAACCGTCGCCGGATCTCCGGTACGTGGCGCCAATCTTCTCGGATACGCGTACGGTACGGCCAGGGGAATGGCGCCGGCGGCGAGGATCGCGGCGTACAAGGTGTGCTGGGTCGGAGGTTGTTTCAGCTCTGATATAATGGCGGCGGTTGATAAGGCCGTCGAGGACGGTGTCGATGTTTTGTCTATTTCTCTTGGCGGTGGAGTTTCCTCGTATTACCGGGATAGTTTGTCTATTGCGGCGTTTGGGGCGATGGAGATGGGTGTTTTTGTCTCCTGCTCCGCGGGGAACGGTGGGCCAGACCCGGTGAGTCTGACGAATGTGTCACCTTGGATCACCACCGTCGGTGCTAGCACTATGGATAGGGATTTTCCGGCCACTGTGAAGTTGGGGAATGGGAGGAGTGTAACGGGAGTTTCGCTTTATAGAGGGAGAATAAAGCTTGACACAAAGAAGCTGTACCCTGTTGTGTTAGCGGGTGGGAATTCGAGTAGTCCCAATCCGAGCTCGTTGTGTTTAGAAGGTACTTTAGATCCGAGGAAAGTTAAGGGGAAGATTGTGATTTGTGATCGTGGGATTAGTCCTAGAGTGCAGAAGGGAGACGTGGTGAAGAATGCCGGAGGAGTTGGGATGATCTTGGCGAATACGGCTTCCAATGGGGAGGAGCTTGTTGCTGATTGTCATCTGATTCCGGCGGTTGCTGTGGGAGAGAATGAAGCAAAATCGATCAAGCATTACGCCTTAACAAGTCCGAAAGCAAAGGCAACTTTAGCATTTGTTGGTACTAGAGTTGGGGTTAGACCGTCTCCTATTGTGGCTGCATTTTCATCAAGAGGGCCTAATCTTTTGAGTTTTGAGATTATGAAGCCGGATTTGGTGGCGCCGGGAGTGAACATTCTTGCTGCTTGGACTGGGGCATTGGGTCCGTCGAGCTTGGCAACGGATCATAGGAGAGTGAAGTTCAATATCTTGTCCGGGACTTCAATGTCATGTCCTCATGTGAGTGGGATTGCTGCTCTGCTCAAATCTAGGCACCCCGAATGGAGTCCAGCTGCGATCAAATCCGCTTTGATGACTACAGCTTATGTTCATGACAACACACATAAGCCTCTTGAAGATGCCTCAAAAGCTAAAATTTCAACCCCTTTTGATCATGGAGCTGGACACATAAACCCGAGGAAGGCTCTTGACCCGGGCTTGGTTTATGACATTCAGCCCCAGGATTATCTTGAGTTCCTCTGCACACAAAAGCTAACCCCAACGCAGCTCAAGGTGTTTAGCAATAGCACTTGCCGTCACACTCTGGCCAATGCAGGGGACCTCAACTATCCGGCAATTTCAGTTGTGTTTGTGGAGAACACTAATGTCTCTGTCTTGACAGTTCATAGAACTGTCACTAATGTTGGCCCTGCGGTTTCGAGTTACCATGCCATAGTTTCACCATTCAAGGGTGCTTATGTGAAAGTTGAGCCGCGAATTCTGAAGTTCACCAAAGCTAATCAGAAGCTGTCTTACAAAGTGACCTTTACCACAAAGACTAGGCAGACAGAACCTGAGTTTGGAGGGTTGGTGTGGAAGGATGGAATGCACAGAGTGAGAAGTCCAATTGTGGTCGCATGGGGAATGCTGATATGA

Protein Analysis

774

Amino Acids

83.32

Weight (kDa)

9.31

Isoelectric Point (pI)

35.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I9 PF05922 32 - 116 1.5e-19 Peptidase inhibitor I9
Peptidase_S8 PF00082 144 - 597 2.7e-51 Subtilase family
PA PF02225 384 - 473 1.9e-13 PA domain
fn3_6 PF17766 670 - 768 9.8e-29 Fibronectin type-III domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000407)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 5 cut(s) 434, 440, 461, 1012, 1675
AatII GACGTC 1 cut(s) 438
AccB1I GGYRCC 6 cut(s) 508, 584, 719, 763, 1570, 1722
AccII CGCG 7 cut(s) 514, 530, 546, 740, 782, 974, 2164
AclWI GGATC 5 cut(s) 712, 785, 1031, 1217, 1641
AcoI YGGCCR 5 cut(s) 467, 541, 750, 1065, 1995
AcsI RAATTY 3 cut(s) 1174, 1824, 2166
AcuI CTGAAG 2 cut(s) 49, 2192
AcyI GRCGYC 6 cut(s) 255, 435, 585, 720, 764, 1571
AdeI CACNNNGTG 1 cut(s) 2284
AfiI CCNNNNNNNGG 7 cut(s) 197, 716, 1870, 1888, 2004, 2138, 2249
AflIII ACRYGT 1 cut(s) 738
AgsI TTSAA 6 cut(s) 487, 1654, 1674, 1805, 1830, 2137
AjiI CACGTC 1 cut(s) 1294
AjnI CCWGG 2 cut(s) 752, 1908
AjuI GAANNNNNNNTTGG 6 cut(s) 231, 263, 1547, 1579, 2232, 2264
Alw21I GWGCWC 1 cut(s) 1199
Alw26I GTCTC 7 cut(s) 427, 507, 530, 967, 1284, 1500, 2062
AlwI GGATC 5 cut(s) 712, 785, 1031, 1217, 1641
AlwNI CAGNNNCTG 2 cut(s) 2197, 2243
Ama87I CYCGRG 4 cut(s) 371, 655, 1864, 1882
ApeKI GCWGC 6 cut(s) 260, 1508, 1592, 1703, 1742, 1954
ApoI RAATTY 3 cut(s) 1174, 1824, 2166
AspLEI GCGC 7 cut(s) 206, 519, 530, 587, 722, 766, 1573
AspS9I GGNCC 8 cut(s) 411, 661, 678, 986, 1526, 1613, 2008, 2096
AsuC2I CCSGG 7 cut(s) 602, 911, 995, 1575, 1666, 1883, 1884
AsuHPI GGTGA 7 cut(s) 130, 1008, 1009, 1018, 1309, 2121, 2170
AsuNHI GCTAGC 1 cut(s) 1040
AvaI CYCGRG 4 cut(s) 371, 655, 1864, 1882
AvaII GGWCC 5 cut(s) 411, 661, 678, 1613, 2008
BaeI ACNNNNGTAYC 4 cut(s) 320, 353, 1464, 1497
BalI TGGCCA 1 cut(s) 1997
BanI GGYRCC 6 cut(s) 508, 584, 719, 763, 1570, 1722
BanII GRGCYC 2 cut(s) 378, 1199
BarI GAAGNNNNNNTAC 2 cut(s) 2186, 2218
BbsI GAAGAC 1 cut(s) 52
Bbv12I GWGCWC 1 cut(s) 1199
BbvI GCAGC 6 cut(s) 272, 1495, 1579, 1690, 1729, 1966
BccI CCATC 4 cut(s) 299, 937, 943, 2264
BceAI ACGGC 4 cut(s) 765, 833, 1353, 1968
BciT130I CCWGG 2 cut(s) 754, 1910
BciVI GTATCC 1 cut(s) 728
BclI TGATCA 2 cut(s) 24, 1840
BcnI CCSGG 7 cut(s) 602, 911, 995, 1575, 1666, 1883, 1884
BcoDI GTCTC 7 cut(s) 427, 507, 530, 967, 1284, 1500, 2062
BfaI CTAG 6 cut(s) 293, 1041, 1275, 1476, 1719, 2229
BfmI CTRYAG 1 cut(s) 1767
BfoI RGCGCY 6 cut(s) 207, 520, 588, 723, 767, 1574
BfuI GTATCC 1 cut(s) 728
BlpI GCTNAGC 2 cut(s) 264, 269
BmcAI AGTACT 2 cut(s) 180, 450
Bme1390I CCNGG 9 cut(s) 602, 754, 911, 995, 1575, 1666, 1883, 1884, 1910
Bme18I GGWCC 5 cut(s) 411, 661, 678, 1613, 2008
BmeT110I CYCGRG 4 cut(s) 371, 655, 1864, 1882
BmgBI CACGTC 1 cut(s) 1294
BmgT120I GGNCC 8 cut(s) 411, 661, 678, 986, 1526, 1613, 2008, 2096
BmrFI CCNGG 9 cut(s) 602, 754, 911, 995, 1575, 1666, 1883, 1884, 1910
BmrI ACTGGG 1 cut(s) 1611
BmsI GCATC 1 cut(s) 1798
BmtI GCTAGC 1 cut(s) 1044
BmuI ACTGGG 1 cut(s) 1611
BpiI GAAGAC 1 cut(s) 52
BplI GAGNNNNNCTC 2 cut(s) 1858, 1890
BpmI CTGGAG 1 cut(s) 541
Bpu1102I GCTNAGC 2 cut(s) 264, 269
BpuEI CTTGAG 2 cut(s) 1940, 1943
BpuMI CCSGG 7 cut(s) 602, 911, 995, 1575, 1666, 1883, 1884
Bsa29I ATCGAT 1 cut(s) 1415
BsaAI YACGTR 1 cut(s) 716
BsaBI GATNNNNATC 1 cut(s) 1371
BsaHI GRCGYC 6 cut(s) 255, 435, 585, 720, 764, 1571
BsaI GGTCTC 1 cut(s) 530
BsaWI WCCGGW 4 cut(s) 494, 505, 620, 709
BsaXI ACNNNNNCTCC 8 cut(s) 143, 173, 635, 665, 1281, 1311, 2244, 2274
Bsc4I CCNNNNNNNGG 7 cut(s) 197, 716, 1870, 1888, 2004, 2138, 2249
Bse118I RCCGGY 2 cut(s) 539, 766
Bse1I ACTGG 3 cut(s) 20, 158, 1606
Bse3DI GCAATG 1 cut(s) 69
Bse8I GATNNNNATC 1 cut(s) 1371
BseBI CCWGG 2 cut(s) 754, 1910
BseCI ATCGAT 1 cut(s) 1415
BseGI GGATG 3 cut(s) 102, 1326, 2275
BseJI GATNNNNATC 1 cut(s) 1371
BseLI CCNNNNNNNGG 7 cut(s) 197, 716, 1870, 1888, 2004, 2138, 2249
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 4 cut(s) 189, 260, 278, 2235
BseNI ACTGG 3 cut(s) 20, 158, 1606
BseRI GAGGAG 4 cut(s) 151, 1105, 1326, 1367
BseX3I CGGCCG 1 cut(s) 541
BseXI GCAGC 6 cut(s) 272, 1495, 1579, 1690, 1729, 1966
BseYI CCCAGC 2 cut(s) 414, 798
BsgI GTGCAG 2 cut(s) 1301, 1915
Bsh1236I CGCG 7 cut(s) 514, 530, 546, 740, 782, 974, 2164
Bsh1285I CGRYCG 1 cut(s) 544
BshNI GGYRCC 6 cut(s) 508, 584, 719, 763, 1570, 1722
BshVI ATCGAT 1 cut(s) 1415
BsiEI CGRYCG 1 cut(s) 544
BsiHKAI GWGCWC 1 cut(s) 1199
BsiHKCI CYCGRG 4 cut(s) 371, 655, 1864, 1882
BsiWI CGTACG 1 cut(s) 741
BslFI GGGAC 7 cut(s) 397, 637, 674, 691, 1170, 1681, 2021
BslI CCNNNNNNNGG 7 cut(s) 197, 716, 1870, 1888, 2004, 2138, 2249
BsmAI GTCTC 7 cut(s) 427, 507, 530, 967, 1284, 1500, 2062
BsmBI CGTCTC 2 cut(s) 1284, 1500
BsmFI GGGAC 7 cut(s) 397, 637, 674, 691, 1170, 1681, 2021
BsmI GAATGC 3 cut(s) 1309, 2280, 2319
Bso31I GGTCTC 1 cut(s) 530
BsoBI CYCGRG 4 cut(s) 371, 655, 1864, 1882
Bsp1286I GDGCHC 2 cut(s) 378, 1199
Bsp1720I GCTNAGC 2 cut(s) 264, 269
BspCNI CTCAG 4 cut(s) 188, 261, 277, 2236
BspDI ATCGAT 1 cut(s) 1415
BspFNI CGCG 7 cut(s) 514, 530, 546, 740, 782, 974, 2164
BspHI TCATGA 1 cut(s) 1780
BspOI GCTAGC 1 cut(s) 1044
BspPI GGATC 5 cut(s) 712, 785, 1031, 1217, 1641
BspT107I GGYRCC 6 cut(s) 508, 584, 719, 763, 1570, 1722
BspTNI GGTCTC 1 cut(s) 530
BsrDI GCAATG 1 cut(s) 69
BsrFI RCCGGY 2 cut(s) 539, 766
BsrI ACTGG 3 cut(s) 20, 158, 1606
BssAI RCCGGY 2 cut(s) 539, 766
BssNI GRCGYC 6 cut(s) 255, 435, 585, 720, 764, 1571
BssT1I CCWWGG 1 cut(s) 1019
Bst2UI CCWGG 2 cut(s) 754, 1910
Bst4CI ACNGT 9 cut(s) 697, 746, 860, 983, 1033, 1072, 1494, 2071, 2083
BstACI GRCGYC 6 cut(s) 255, 435, 585, 720, 764, 1571
BstBAI YACGTR 1 cut(s) 716
BstC8I GCNNGC 3 cut(s) 532, 768, 1042
BstDEI CTNAG 4 cut(s) 175, 264, 269, 2244
BstDSI CCRYGG 3 cut(s) 512, 544, 972
BstF5I GGATG 3 cut(s) 102, 1326, 2275
BstFNI CGCG 7 cut(s) 514, 530, 546, 740, 782, 974, 2164
BstH2I RGCGCY 6 cut(s) 207, 520, 588, 723, 767, 1574
BstHHI GCGC 7 cut(s) 206, 519, 530, 587, 722, 766, 1573
BstMAI GTCTC 7 cut(s) 427, 507, 530, 967, 1284, 1500, 2062
BstMCI CGRYCG 1 cut(s) 544
BstNI CCWGG 2 cut(s) 754, 1910
BstSCI CCNGG 9 cut(s) 600, 752, 909, 993, 1573, 1664, 1881, 1882, 1908
BstSFI CTRYAG 1 cut(s) 1767
BstUI CGCG 7 cut(s) 514, 530, 546, 740, 782, 974, 2164
BstV1I GCAGC 6 cut(s) 272, 1495, 1579, 1690, 1729, 1966
BstV2I GAAGAC 1 cut(s) 52
BstX2I RGATCY 2 cut(s) 704, 1222
BstXI CCANNNNNNTGG 1 cut(s) 760
BstYI RGATCY 2 cut(s) 704, 1222
BstZI CGGCCG 1 cut(s) 541
Bsu15I ATCGAT 1 cut(s) 1415
BsuI GTATCC 1 cut(s) 728
BsuTUI ATCGAT 1 cut(s) 1415
BtgI CCRYGG 3 cut(s) 512, 544, 972
BtgZI GCGATG 1 cut(s) 956
BtrI CACGTC 1 cut(s) 1294
BtsCI GGATG 3 cut(s) 102, 1326, 2275
BtsIMutI CAGTG 2 cut(s) 27, 1068
Cac8I GCNNGC 3 cut(s) 532, 768, 1042
CaiI CAGNNNCTG 2 cut(s) 2197, 2243
CciI TCATGA 1 cut(s) 1780
CfoI GCGC 7 cut(s) 206, 519, 530, 587, 722, 766, 1573
Cfr10I RCCGGY 2 cut(s) 539, 766
Cfr13I GGNCC 8 cut(s) 411, 661, 678, 986, 1526, 1613, 2008, 2096
Cfr42I CCGCGG 3 cut(s) 515, 547, 975
Cfr9I CCCGGG 1 cut(s) 1882
ClaI ATCGAT 1 cut(s) 1415
CseI GACGC 1 cut(s) 244
CviAII CATG 8 cut(s) 251, 431, 1680, 1688, 1781, 1844, 2117, 2307
DdeI CTNAG 4 cut(s) 175, 264, 269, 2244
DinI GGCGCC 4 cut(s) 586, 721, 765, 1572
DraIII CACNNNGTG 1 cut(s) 2284
DrdI GACNNNNNNGTC 5 cut(s) 434, 440, 461, 1012, 1675
DseDI GACNNNNNNGTC 5 cut(s) 434, 440, 461, 1012, 1675
EaeI YGGCCR 5 cut(s) 467, 541, 750, 1065, 1995
EagI CGGCCG 1 cut(s) 541
EciI GGCGGA 1 cut(s) 109
Ecl136II GAGCTC 1 cut(s) 1197
EclXI CGGCCG 1 cut(s) 541
Eco130I CCWWGG 1 cut(s) 1019
Eco24I GRGCYC 2 cut(s) 378, 1199
Eco31I GGTCTC 1 cut(s) 530
Eco47I GGWCC 5 cut(s) 411, 661, 678, 1613, 2008
Eco52I CGGCCG 1 cut(s) 541
Eco53kI GAGCTC 1 cut(s) 1197
Eco57I CTGAAG 2 cut(s) 49, 2192
Eco88I CYCGRG 4 cut(s) 371, 655, 1864, 1882
EcoICRI GAGCTC 1 cut(s) 1197
EcoO109I RGGNCCY 3 cut(s) 678, 1526, 2008
EcoRI GAATTC 2 cut(s) 1174, 2166
EcoRII CCWGG 2 cut(s) 752, 1908
EcoT14I CCWWGG 1 cut(s) 1019
EcoT38I GRGCYC 2 cut(s) 378, 1199
EgeI GGCGCC 4 cut(s) 586, 721, 765, 1572
EheI GGCGCC 4 cut(s) 586, 721, 765, 1572
ErhI CCWWGG 1 cut(s) 1019
Esp3I CGTCTC 2 cut(s) 1284, 1500
FaeI CATG 8 cut(s) 254, 434, 1683, 1691, 1784, 1847, 2120, 2310
FaqI GGGAC 7 cut(s) 397, 637, 674, 691, 1170, 1681, 2021
FatI CATG 8 cut(s) 250, 430, 1679, 1687, 1780, 1843, 2116, 2306
FauI CCCGC 2 cut(s) 967, 1159
FbaI TGATCA 2 cut(s) 24, 1840
FokI GGATG 3 cut(s) 89, 1333, 2282
FriOI GRGCYC 2 cut(s) 378, 1199
FspBI CTAG 6 cut(s) 293, 1041, 1275, 1476, 1719, 2229
GlaI GCGC 7 cut(s) 205, 518, 529, 586, 721, 765, 1572
GsaI CCCAGC 2 cut(s) 418, 802
GsuI CTGGAG 1 cut(s) 541
HaeII RGCGCY 6 cut(s) 207, 520, 588, 723, 767, 1574
HgaI GACGC 1 cut(s) 244
HhaI GCGC 7 cut(s) 206, 519, 530, 587, 722, 766, 1573
Hin1I GRCGYC 6 cut(s) 255, 435, 585, 720, 764, 1571
Hin1II CATG 8 cut(s) 254, 434, 1683, 1691, 1784, 1847, 2120, 2310
Hin6I GCGC 7 cut(s) 204, 517, 528, 585, 720, 764, 1571
HinP1I GCGC 7 cut(s) 204, 517, 528, 585, 720, 764, 1571
HindIII AAGCTT 1 cut(s) 1130
HinfI GANTC 9 cut(s) 43, 131, 222, 309, 420, 591, 1000, 1378, 1735
HphI GGTGA 7 cut(s) 130, 1008, 1009, 1018, 1309, 2121, 2170
Hpy166II GTNNAC 3 cut(s) 172, 1582, 2178
Hpy188III TCNNGA 6 cut(s) 1521, 1781, 1802, 1877, 1919, 2065
Hpy8I GTNNAC 3 cut(s) 172, 1582, 2178
Hpy99I CGWCG 7 cut(s) 260, 446, 584, 701, 854, 1037, 1621
HpyAV CCTTC 4 cut(s) 1205, 1279, 1864, 2260
HpyCH4III ACNGT 9 cut(s) 697, 746, 860, 983, 1033, 1072, 1494, 2071, 2083
HpyCH4IV ACGT 4 cut(s) 405, 435, 715, 1293
HpyCH4V TGCA 7 cut(s) 83, 567, 1282, 1511, 1932, 2003, 2278
HpyF3I CTNAG 4 cut(s) 175, 264, 269, 2244
HpySE526I ACGT 4 cut(s) 405, 435, 715, 1293
Hsp92I GRCGYC 6 cut(s) 255, 435, 585, 720, 764, 1571
Hsp92II CATG 8 cut(s) 254, 434, 1683, 1691, 1784, 1847, 2120, 2310
HspAI GCGC 7 cut(s) 204, 517, 528, 585, 720, 764, 1571
KasI GGCGCC 4 cut(s) 584, 719, 763, 1570
KflI GGGWCCC 1 cut(s) 678
KroI GCCGGC 1 cut(s) 766
KroNI GCCGGC 1 cut(s) 768
Ksp22I TGATCA 2 cut(s) 24, 1840
KspI CCGCGG 3 cut(s) 515, 547, 975
LmnI GCTCC 4 cut(s) 348, 974, 1354, 1847
Lsp1109I GCAGC 6 cut(s) 272, 1495, 1579, 1690, 1729, 1966
LweI GCATC 1 cut(s) 1798
MaeI CTAG 6 cut(s) 293, 1041, 1275, 1476, 1719, 2229
MaeII ACGT 4 cut(s) 405, 435, 715, 1293
MaeIII GTNAC 6 cut(s) 1014, 1096, 1985, 2083, 2111, 2209
MboII GAAGA 7 cut(s) 52, 55, 586, 719, 1255, 1312, 1817
MfeI CAATTG 1 cut(s) 2295
MflI RGATCY 2 cut(s) 704, 1222
MhlI GDGCHC 2 cut(s) 378, 1199
MlsI TGGCCA 1 cut(s) 1997
MluCI AATT 5 cut(s) 1174, 1824, 2025, 2166, 2295
MluI ACGCGT 1 cut(s) 738
MluNI TGGCCA 1 cut(s) 1997
Mly113I GGCGCC 4 cut(s) 585, 720, 764, 1571
MlyI GAGTC 4 cut(s) 318, 429, 1009, 1744
MmeI TCCRAC 3 cut(s) 424, 450, 784
Mox20I TGGCCA 1 cut(s) 1997
MreI CGCCGGCG 1 cut(s) 766
MroNI GCCGGC 1 cut(s) 766
MscI TGGCCA 1 cut(s) 1997
MseI TTAA 2 cut(s) 1236, 1433
MslI CAYNNNNRTG 3 cut(s) 107, 497, 1692
Msp20I TGGCCA 1 cut(s) 1997
MspA1I CMGCKG 5 cut(s) 268, 514, 546, 974, 1742
MspR9I CCNGG 9 cut(s) 602, 754, 911, 995, 1575, 1666, 1883, 1884, 1910
MunI CAATTG 1 cut(s) 2295
Mva1269I GAATGC 3 cut(s) 1309, 2280, 2319
MvaI CCWGG 2 cut(s) 754, 1910
MvnI CGCG 7 cut(s) 514, 530, 546, 740, 782, 974, 2164
NaeI GCCGGC 1 cut(s) 768
NarI GGCGCC 4 cut(s) 585, 720, 764, 1571
NciI CCSGG 7 cut(s) 602, 911, 995, 1575, 1666, 1883, 1884
NgoMIV GCCGGC 1 cut(s) 766
NheI GCTAGC 1 cut(s) 1040
NlaIII CATG 8 cut(s) 254, 434, 1683, 1691, 1784, 1847, 2120, 2310
NmuCI GTSAC 4 cut(s) 1014, 1985, 2083, 2209
PagI TCATGA 1 cut(s) 1780
PcsI WCGNNNNNNNCGW 2 cut(s) 384, 450
PctI GAATGC 3 cut(s) 1309, 2280, 2319
PdiI GCCGGC 1 cut(s) 768
PfeI GAWTC 5 cut(s) 43, 131, 222, 591, 1378
Pfl23II CGTACG 1 cut(s) 741
PflFI GACNNNGTC 2 cut(s) 404, 860
PfoI TCCNGGA 1 cut(s) 1664
PleI GAGTC 4 cut(s) 317, 428, 1008, 1743
PluTI GGCGCC 4 cut(s) 588, 723, 767, 1574
PpsI GAGTC 4 cut(s) 317, 428, 1008, 1743
Ppu21I YACGTR 1 cut(s) 716
PpuMI RGGWCCY 2 cut(s) 678, 2008
Psp124BI GAGCTC 1 cut(s) 1199
Psp5II RGGWCCY 2 cut(s) 678, 2008
Psp6I CCWGG 2 cut(s) 752, 1908
PspFI CCCAGC 2 cut(s) 414, 798
PspGI CCWGG 2 cut(s) 752, 1908
PspLI CGTACG 1 cut(s) 741
PspPI GGNCC 8 cut(s) 411, 661, 678, 986, 1526, 1613, 2008, 2096
PspPPI RGGWCCY 2 cut(s) 678, 2008
PstNI CAGNNNCTG 2 cut(s) 2197, 2243
PsuI RGATCY 2 cut(s) 704, 1222
PsyI GACNNNGTC 2 cut(s) 404, 860
PvuII CAGCTG 2 cut(s) 268, 1742
RseI CAYNNNNRTG 3 cut(s) 107, 497, 1692
SacI GAGCTC 1 cut(s) 1199
SacII CCGCGG 3 cut(s) 515, 547, 975
SaqAI TTAA 2 cut(s) 1236, 1433
Sau96I GGNCC 8 cut(s) 411, 661, 678, 986, 1526, 1613, 2008, 2096
ScaI AGTACT 2 cut(s) 180, 450
SchI GAGTC 4 cut(s) 318, 429, 1009, 1744
ScrFI CCNGG 9 cut(s) 602, 754, 911, 995, 1575, 1666, 1883, 1884, 1910
SduI GDGCHC 2 cut(s) 378, 1199
SfaNI GCATC 1 cut(s) 1798
SfcI CTRYAG 1 cut(s) 1767
SfoI GGCGCC 4 cut(s) 586, 721, 765, 1572
Sfr303I CCGCGG 3 cut(s) 515, 547, 975
SgrAI CRCCGGYG 1 cut(s) 766
SgrBI CCGCGG 3 cut(s) 515, 547, 975
SinI GGWCC 5 cut(s) 411, 661, 678, 1613, 2008
SmaI CCCGGG 1 cut(s) 1884
SmiMI CAYNNNNRTG 3 cut(s) 107, 497, 1692
SmlI CTYRAG 2 cut(s) 1919, 1958
SmoI CTYRAG 2 cut(s) 1919, 1958
Sse9I AATT 5 cut(s) 1174, 1824, 2025, 2166, 2295
SspDI GGCGCC 4 cut(s) 584, 719, 763, 1570
SspMI CTAG 6 cut(s) 293, 1041, 1275, 1476, 1719, 2229
SstI GAGCTC 1 cut(s) 1199
StyD4I CCNGG 9 cut(s) 600, 752, 909, 993, 1573, 1664, 1881, 1882, 1908
StyI CCWWGG 1 cut(s) 1019
TaaI ACNGT 9 cut(s) 697, 746, 860, 983, 1033, 1072, 1494, 2071, 2083
TaiI ACGT 4 cut(s) 408, 438, 718, 1296
TaqI TCGA 9 cut(s) 150, 378, 453, 852, 864, 1178, 1415, 1619, 2108
TasI AATT 5 cut(s) 1174, 1824, 2025, 2166, 2295
TatI WGTACW 3 cut(s) 178, 448, 645
TfiI GAWTC 5 cut(s) 43, 131, 222, 591, 1378
Tru1I TTAA 2 cut(s) 1236, 1433
Tru9I TTAA 2 cut(s) 1236, 1433
TscAI CASTG 2 cut(s) 27, 1075
TseFI GTSAC 4 cut(s) 1014, 1985, 2083, 2209
TseI GCWGC 6 cut(s) 260, 1508, 1592, 1703, 1742, 1954
Tsp45I GTSAC 4 cut(s) 1014, 1985, 2083, 2209
TspDTI ATGAA 7 cut(s) 17, 239, 1419, 1506, 1568, 1769, 2063
TspGWI ACGGA 4 cut(s) 656, 684, 1605, 1646
TspMI CCCGGG 1 cut(s) 1882
TspRI CASTG 2 cut(s) 27, 1075
Tth111I GACNNNGTC 2 cut(s) 404, 860
VpaK11BI GGWCC 5 cut(s) 411, 661, 678, 1613, 2008
XapI RAATTY 3 cut(s) 1174, 1824, 2166
XcmI CCANNNNNNNNNTGG 2 cut(s) 27, 1075
XmaI CCCGGG 1 cut(s) 1882
XspI CTAG 6 cut(s) 293, 1041, 1275, 1476, 1719, 2229
ZraI GACGTC 1 cut(s) 436
ZrmI AGTACT 2 cut(s) 180, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.