Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Forward (+)

28611830 .. 28614211

Gene Structure 2382 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG268000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCCACAATGTCACGCCCAAAGGCTTCTCGGAGCAACAGACTGATGAACAGAGAGGGAAGAGGACATGCCTTTCCAGTGGACACTCCAAGCTTCTACTTGAAGATTGTTACTGCTGTGGATCTCCAAGATGGGAAGGAACTTCCAGAGCCAGCTGTGACGAAGTATGGGAATTGTTTGGCAGACTCCATATTCCTCAAGGTTCCCAATTGCGGAACATCATGGCCAGTAGAACTGAAAAAAACGATTCATGGTAGCCGAATCTGGTTACAAAAAGGATGGGAACGATTCACAGACTTTTACTCCATAGACCAAGATTACTTCAGAGTGTTCAGCTATGAAGGCGAACATTCTTATTTCCAAGTACACATTTTCAACTGCAGCAATATGGAAATAGGTTACCCAATTTGTGGAGGATCTGGTGGATGCATGTCTACACCCAATTCAAAAGGTACCTCCTTTCCCTCTGCATCATCTGCTGGCAGAGACCAAAACAATGACAACCAACGTGACTTTTATGGAGCTAACAATTTCAAATTCGGGGACAAGCCTAGTTTTCGGGTCACAATGACTGAAAAATACTTATCATCTCTCTTGAGAGTACCTTCGGATTTCTCCATCGAACATTTGTGTGAAATAGGGTCTCATTCTACTGTGACCTTACAGACTTCAGGTGAGAGAACATGGACTGTTCAGTGTGCTGTCAGCAAATGTGGGAAAAATGCAAGATTCAATCGTGCTAGTTGGAGAGGATTTGTGAAGGGCAATCAATTGGAAGCAGGTGATGATTGTCTGTTTGAGTTGATAGGCGAACGTATGCTCAAAGTCAACATATCCCGAGCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

282

Amino Acids

31.69

Weight (kDa)

8.8

Isoelectric Point (pI)

33.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	46 - 126	1.7e-07	B3 DNA binding domain
B3	PF02362	188 - 281	7.6e-13	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	770
Acc36I	ACCTGC	1 cut(s)	770
Acc65I	GGTACC	1 cut(s)	452
AccB1I	GGYRCC	1 cut(s)	452
AccB7I	CCANNNNNTGG	1 cut(s)	410
AccI	GTMKAC	1 cut(s)	434
AciI	CCGC	1 cut(s)	213
AclWI	GGATC	2 cut(s)	129, 424
AcoI	YGGCCR	2 cut(s)	3, 224
AcsI	RAATTY	1 cut(s)	536
AcuI	CTGAAG	2 cut(s)	307, 654
AfaI	GTAC	3 cut(s)	366, 454, 603
AfiI	CCNNNNNNNGG	2 cut(s)	212, 410
AgsI	TTSAA	5 cut(s)	103, 376, 447, 535, 733
AluBI	AGCT	5 cut(s)	93, 155, 336, 524, 842
AluI	AGCT	5 cut(s)	93, 155, 336, 524, 842
Alw26I	GTCTC	2 cut(s)	480, 648
AlwI	GGATC	2 cut(s)	129, 424
Ama87I	CYCGRG	1 cut(s)	837
AoxI	GGCC	2 cut(s)	3, 224
ApeKI	GCWGC	1 cut(s)	381
ApoI	RAATTY	1 cut(s)	536
Asp718I	GGTACC	1 cut(s)	452
AsuHPI	GGTGA	2 cut(s)	686, 794
AvaI	CYCGRG	1 cut(s)	837
BalI	TGGCCA	2 cut(s)	5, 226
BanI	GGYRCC	1 cut(s)	452
BbvI	GCAGC	1 cut(s)	393
BccI	CCATC	3 cut(s)	125, 273, 626
BcoDI	GTCTC	2 cut(s)	480, 648
BfaI	CTAG	2 cut(s)	552, 741
BfmI	CTRYAG	1 cut(s)	379
BfuAI	ACCTGC	1 cut(s)	770
BisI	GCNGC	1 cut(s)	382
BlsI	GCNGC	1 cut(s)	383
BmeT110I	CYCGRG	1 cut(s)	837
BmiI	GGNNCC	2 cut(s)	204, 454
BmsI	GCATC	2 cut(s)	416, 479
BpuEI	CTTGAG	2 cut(s)	182, 616
BsaI	GGTCTC	2 cut(s)	480, 648
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 410
Bse1I	ACTGG	2 cut(s)	77, 227
BseGI	GGATG	2 cut(s)	284, 431
BseLI	CCNNNNNNNGG	2 cut(s)	212, 410
BseNI	ACTGG	2 cut(s)	77, 227
BseXI	GCAGC	1 cut(s)	393
BshFI	GGCC	2 cut(s)	5, 226
BshNI	GGYRCC	1 cut(s)	452
BsiHKCI	CYCGRG	1 cut(s)	837
BslFI	GGGAC	1 cut(s)	557
BslI	CCNNNNNNNGG	2 cut(s)	212, 410
BsmAI	GTCTC	2 cut(s)	480, 648
BsmFI	GGGAC	1 cut(s)	557
BsnI	GGCC	2 cut(s)	5, 226
Bso31I	GGTCTC	2 cut(s)	480, 648
BsoBI	CYCGRG	1 cut(s)	837
Bsp143I	GATC	2 cut(s)	121, 416
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	2 cut(s)	5, 226
BspLI	GGNNCC	2 cut(s)	204, 454
BspMAI	CTGCAG	1 cut(s)	383
BspMI	ACCTGC	1 cut(s)	770
BspPI	GGATC	2 cut(s)	129, 424
BspT107I	GGYRCC	1 cut(s)	452
BspTNI	GGTCTC	2 cut(s)	480, 648
BsrI	ACTGG	2 cut(s)	77, 227
BssMI	GATC	2 cut(s)	121, 416
Bst4CI	ACNGT	2 cut(s)	655, 691
Bst6I	CTCTTC	1 cut(s)	55
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstC8I	GCNNGC	2 cut(s)	153, 481
BstEII	GGTNACC	1 cut(s)	398
BstF5I	GGATG	2 cut(s)	284, 431
BstKTI	GATC	2 cut(s)	124, 419
BstMAI	GTCTC	2 cut(s)	480, 648
BstMBI	GATC	2 cut(s)	121, 416
BstMWI	GCNNNNNNNGC	2 cut(s)	342, 476
BstNSI	RCATGY	2 cut(s)	71, 433
BstPI	GGTNACC	1 cut(s)	398
BstSFI	CTRYAG	1 cut(s)	379
BstV1I	GCAGC	1 cut(s)	393
BstX2I	RGATCY	2 cut(s)	121, 416
BstYI	RGATCY	2 cut(s)	121, 416
BsuRI	GGCC	2 cut(s)	5, 226
BtsCI	GGATG	2 cut(s)	284, 431
BtsIMutI	CAGTG	2 cut(s)	84, 701
BveI	ACCTGC	1 cut(s)	770
Cac8I	GCNNGC	2 cut(s)	153, 481
Csp6I	GTAC	3 cut(s)	365, 453, 602
CviAII	CATG	5 cut(s)	68, 222, 251, 430, 684
CviQI	GTAC	3 cut(s)	365, 453, 602
DpnI	GATC	2 cut(s)	123, 418
DpnII	GATC	2 cut(s)	121, 416
EaeI	YGGCCR	2 cut(s)	3, 224
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
Eco31I	GGTCTC	2 cut(s)	480, 648
Eco57I	CTGAAG	2 cut(s)	307, 654
Eco88I	CYCGRG	1 cut(s)	837
Eco91I	GGTNACC	1 cut(s)	398
EcoO65I	GGTNACC	1 cut(s)	398
EcoT22I	ATGCAT	1 cut(s)	431
FaeI	CATG	5 cut(s)	71, 225, 254, 433, 687
FaqI	GGGAC	1 cut(s)	557
FatI	CATG	5 cut(s)	67, 221, 250, 429, 683
FblI	GTMKAC	1 cut(s)	434
Fnu4HI	GCNGC	1 cut(s)	382
FokI	GGATG	2 cut(s)	291, 438
Fsp4HI	GCNGC	1 cut(s)	382
FspBI	CTAG	2 cut(s)	552, 741
GluI	GCNGC	1 cut(s)	382
HaeIII	GGCC	2 cut(s)	5, 226
Hin1II	CATG	5 cut(s)	71, 225, 254, 433, 687
HincII	GTYRAC	1 cut(s)	829
HindII	GTYRAC	1 cut(s)	829
HindIII	AAGCTT	1 cut(s)	91
HinfI	GANTC	5 cut(s)	185, 247, 261, 288, 729
HphI	GGTGA	2 cut(s)	686, 794
Hpy166II	GTNNAC	4 cut(s)	82, 367, 435, 829
Hpy188I	TCNGA	3 cut(s)	33, 326, 610
Hpy188III	TCNNGA	3 cut(s)	146, 595, 837
Hpy8I	GTNNAC	4 cut(s)	82, 367, 435, 829
HpyAV	CCTTC	4 cut(s)	130, 335, 615, 754
HpyCH4III	ACNGT	2 cut(s)	655, 691
HpyCH4IV	ACGT	2 cut(s)	508, 814
HpyCH4V	TGCA	4 cut(s)	381, 429, 470, 725
HpyF10VI	GCNNNNNNNGC	2 cut(s)	342, 476
HpySE526I	ACGT	2 cut(s)	508, 814
Hsp92II	CATG	5 cut(s)	71, 225, 254, 433, 687
KpnI	GGTACC	1 cut(s)	456
Kzo9I	GATC	2 cut(s)	121, 416
LmnI	GCTCC	2 cut(s)	33, 521
LpnPI	CCDG	9 cut(s)	90, 159, 165, 240, 250, 405, 465, 657, 765
Lsp1109I	GCAGC	1 cut(s)	393
LweI	GCATC	2 cut(s)	416, 479
MaeI	CTAG	2 cut(s)	552, 741
MaeII	ACGT	2 cut(s)	508, 814
MaeIII	GTNAC	8 cut(s)	12, 109, 157, 267, 398, 509, 562, 655
MalI	GATC	2 cut(s)	123, 418
MboI	GATC	2 cut(s)	121, 416
MboII	GAAGA	2 cut(s)	72, 115
MfeI	CAATTG	2 cut(s)	208, 770
MflI	RGATCY	2 cut(s)	121, 416
MlsI	TGGCCA	2 cut(s)	5, 226
MluCI	AATT	7 cut(s)	172, 208, 405, 442, 529, 536, 770
MluNI	TGGCCA	2 cut(s)	5, 226
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	725
MnlI	CCTC	7 cut(s)	49, 56, 206, 407, 466, 475, 743
Mox20I	TGGCCA	2 cut(s)	5, 226
Mph1103I	ATGCAT	1 cut(s)	431
MscI	TGGCCA	2 cut(s)	5, 226
MslI	CAYNNNNRTG	1 cut(s)	630
Msp20I	TGGCCA	2 cut(s)	5, 226
MspA1I	CMGCKG	1 cut(s)	155
MunI	CAATTG	2 cut(s)	208, 770
MwoI	GCNNNNNNNGC	2 cut(s)	342, 476
NdeII	GATC	2 cut(s)	121, 416
NlaIII	CATG	5 cut(s)	71, 225, 254, 433, 687
NlaIV	GGNNCC	2 cut(s)	204, 454
NmuCI	GTSAC	5 cut(s)	12, 157, 509, 562, 655
NsiI	ATGCAT	1 cut(s)	431
NspI	RCATGY	2 cut(s)	71, 433
PaqCI	CACCTGC	1 cut(s)	770
PfeI	GAWTC	4 cut(s)	247, 261, 288, 729
PflMI	CCANNNNNTGG	1 cut(s)	410
PkrI	GCNGC	1 cut(s)	383
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
PspEI	GGTNACC	1 cut(s)	398
PspN4I	GGNNCC	2 cut(s)	204, 454
PstI	CTGCAG	1 cut(s)	383
PsuI	RGATCY	2 cut(s)	121, 416
PvuII	CAGCTG	1 cut(s)	155
RsaI	GTAC	3 cut(s)	366, 454, 603
RsaNI	GTAC	3 cut(s)	365, 453, 602
RseI	CAYNNNNRTG	1 cut(s)	630
SatI	GCNGC	1 cut(s)	382
Sau3AI	GATC	2 cut(s)	121, 416
SchI	GAGTC	1 cut(s)	179
SfaNI	GCATC	2 cut(s)	416, 479
SfcI	CTRYAG	1 cut(s)	379
SmiMI	CAYNNNNRTG	1 cut(s)	630
SmlI	CTYRAG	2 cut(s)	197, 595
SmoI	CTYRAG	2 cut(s)	197, 595
Sse9I	AATT	7 cut(s)	172, 208, 405, 442, 529, 536, 770
SsiI	CCGC	1 cut(s)	213
SspMI	CTAG	2 cut(s)	552, 741
TaaI	ACNGT	2 cut(s)	655, 691
TaiI	ACGT	2 cut(s)	511, 817
TaqI	TCGA	1 cut(s)	621
TasI	AATT	7 cut(s)	172, 208, 405, 442, 529, 536, 770
TatI	WGTACW	1 cut(s)	364
TfiI	GAWTC	4 cut(s)	247, 261, 288, 729
TscAI	CASTG	2 cut(s)	84, 701
TseFI	GTSAC	5 cut(s)	12, 157, 509, 562, 655
TseI	GCWGC	1 cut(s)	381
Tsp45I	GTSAC	5 cut(s)	12, 157, 509, 562, 655
TspDTI	ATGAA	3 cut(s)	62, 239, 354
TspRI	CASTG	2 cut(s)	84, 701
Van91I	CCANNNNNTGG	1 cut(s)	410
XapI	RAATTY	1 cut(s)	536
XceI	RCATGY	2 cut(s)	71, 433
XmiI	GTMKAC	1 cut(s)	434
XspI	CTAG	2 cut(s)	552, 741
Zsp2I	ATGCAT	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.