Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Forward (+)

9627295 .. 9629368

Gene Structure 2074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g16850.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGCCACAATGTCACGCCCAATGGCTTCTCGGAGCAACAGAGAGGGAAGAGGACATGCCTTCCCGGTGGACTCTCCAAGCTTCTGCTTGAAGATTGTTACTGGTGTGGATCTCCAAGATGGGAAGGAACTCCCGGAGCCAGCTGTGAGGAAGTATGGGAATTGTATGGAAGACTCCATATTCCTCAAGGTTCCCAATTGCGAAACTTCATGGCCAGTAGAACTGAAAAAAACGATTCGTCATAGCCGAATCTGGCTACAGAAAGGATGGGAACAGTTCACAGACTTTTACTCCGTAGACCAAGATTACTTCATAGTGTTCAGCTATGAAGGAAAACATTCTCATTTCCAAGTACACATTTTCCACAACAACAATATGGAAATAGATTACCCAATTTGTGGAGGAGGAGGCGGTGGATGTATGTCTAATTTACAAGGTAGCTCCTTTCCCTCTGCGTCATCTGCTGCTAGAGACCAAAACAGTAACAACCTACAAGGCTTTCATGGAGCTAACAAGTACAAAGTTGACAAGCCAAGATTTTGGATCACAATGACTGCATCATACTTGTCAGTTTACTTGAACATACCTGCACATTTCACTATTAAAAATCTGTGTGGGATAGGGTCTTCTTGCAATGTGACTTTACAAATTGAAGGTAAGAGAACTTGGACTGTTCTTTGTAGTGTTAGCAAATGTGGGTTAAAAGCAAGATTCAATCCTGCTGGTTGGAAAGCATTTGTTAAGGACAATCAATTGGAAGCAGGTGATCATTGTCGGTTCGAGTTGATAGGCGAACGTAAGCTCAAAGTCGTCATATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

274

Amino Acids

30.68

Weight (kDa)

8.86

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	42 - 123	1e-08	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	752
Acc36I	ACCTGC	2 cut(s)	595, 752
AccB7I	CCANNNNNTGG	1 cut(s)	398
AccI	GTMKAC	1 cut(s)	297
AciI	CCGC	1 cut(s)	411
AclWI	GGATC	2 cut(s)	117, 551
AcoI	YGGCCR	2 cut(s)	3, 212
AfaI	GTAC	2 cut(s)	354, 518
AfiI	CCNNNNNNNGG	1 cut(s)	398
AgsI	TTSAA	4 cut(s)	91, 580, 653, 715
AluBI	AGCT	6 cut(s)	81, 143, 324, 441, 509, 802
AluI	AGCT	6 cut(s)	81, 143, 324, 441, 509, 802
Alw26I	GTCTC	1 cut(s)	465
AlwI	GGATC	2 cut(s)	117, 551
AoxI	GGCC	2 cut(s)	3, 212
ApeKI	GCWGC	1 cut(s)	464
Asp700I	GAANNNNTTC	1 cut(s)	337
AsuC2I	CCSGG	2 cut(s)	65, 134
AsuHPI	GGTGA	1 cut(s)	776
BalI	TGGCCA	2 cut(s)	5, 214
BbsI	GAAGAC	2 cut(s)	177, 618
BbvI	GCAGC	1 cut(s)	451
BccI	CCATC	2 cut(s)	113, 261
BclI	TGATCA	1 cut(s)	766
BcnI	CCSGG	2 cut(s)	65, 134
BcoDI	GTCTC	1 cut(s)	465
BfaI	CTAG	1 cut(s)	468
BfmI	CTRYAG	1 cut(s)	257
BfuAI	ACCTGC	2 cut(s)	595, 752
BisI	GCNGC	1 cut(s)	465
BlsI	GCNGC	1 cut(s)	466
Bme1390I	CCNGG	2 cut(s)	65, 134
BmiI	GGNNCC	2 cut(s)	138, 192
BmrFI	CCNGG	2 cut(s)	65, 134
BmsI	GCATC	1 cut(s)	566
BpiI	GAAGAC	2 cut(s)	177, 618
BpuEI	CTTGAG	1 cut(s)	170
BpuMI	CCSGG	2 cut(s)	65, 134
BsaI	GGTCTC	1 cut(s)	465
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	1 cut(s)	398
Bse1I	ACTGG	2 cut(s)	106, 215
Bse3DI	GCAATG	1 cut(s)	640
BseGI	GGATG	2 cut(s)	272, 422
BseLI	CCNNNNNNNGG	1 cut(s)	398
BseMI	GCAATG	1 cut(s)	640
BseNI	ACTGG	2 cut(s)	106, 215
BseRI	GAGGAG	2 cut(s)	417, 420
BseXI	GCAGC	1 cut(s)	451
BsgI	GTGCAG	1 cut(s)	573
BshFI	GGCC	2 cut(s)	5, 214
BsiSI	CCGG	2 cut(s)	65, 134
BslI	CCNNNNNNNGG	1 cut(s)	398
BsmAI	GTCTC	1 cut(s)	465
BsnI	GGCC	2 cut(s)	5, 214
Bso31I	GGTCTC	1 cut(s)	465
Bsp143I	GATC	3 cut(s)	109, 543, 766
BspACI	CCGC	1 cut(s)	411
BspANI	GGCC	2 cut(s)	5, 214
BspLI	GGNNCC	2 cut(s)	138, 192
BspMI	ACCTGC	2 cut(s)	595, 752
BspPI	GGATC	2 cut(s)	117, 551
BspTNI	GGTCTC	1 cut(s)	465
BsrDI	GCAATG	1 cut(s)	640
BsrI	ACTGG	2 cut(s)	106, 215
BssMI	GATC	3 cut(s)	109, 543, 766
Bst4CI	ACNGT	3 cut(s)	276, 482, 673
Bst6I	CTCTTC	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	272, 422
BstKTI	GATC	3 cut(s)	112, 546, 769
BstMAI	GTCTC	1 cut(s)	465
BstMBI	GATC	3 cut(s)	109, 543, 766
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNSI	RCATGY	1 cut(s)	59
BstSCI	CCNGG	2 cut(s)	63, 132
BstSFI	CTRYAG	1 cut(s)	257
BstV1I	GCAGC	1 cut(s)	451
BstV2I	GAAGAC	2 cut(s)	177, 618
BstX2I	RGATCY	1 cut(s)	109
BstXI	CCANNNNNNTGG	1 cut(s)	540
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	5, 214
BtsCI	GGATG	2 cut(s)	272, 422
BveI	ACCTGC	2 cut(s)	595, 752
Cac8I	GCNNGC	1 cut(s)	141
CseI	GACGC	1 cut(s)	444
Csp6I	GTAC	2 cut(s)	353, 517
CviAII	CATG	3 cut(s)	56, 210, 503
CviQI	GTAC	2 cut(s)	353, 517
DpnI	GATC	3 cut(s)	111, 545, 768
DpnII	GATC	3 cut(s)	109, 543, 766
EaeI	YGGCCR	2 cut(s)	3, 212
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Eco31I	GGTCTC	1 cut(s)	465
FaeI	CATG	3 cut(s)	59, 213, 506
FatI	CATG	3 cut(s)	55, 209, 502
FbaI	TGATCA	1 cut(s)	766
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	1 cut(s)	465
FokI	GGATG	2 cut(s)	279, 429
Fsp4HI	GCNGC	1 cut(s)	465
FspBI	CTAG	1 cut(s)	468
GluI	GCNGC	1 cut(s)	465
HaeIII	GGCC	2 cut(s)	5, 214
HapII	CCGG	2 cut(s)	65, 134
HgaI	GACGC	1 cut(s)	444
Hin1II	CATG	3 cut(s)	59, 213, 506
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HindIII	AAGCTT	1 cut(s)	79
HinfI	GANTC	5 cut(s)	71, 173, 235, 249, 711
HpaII	CCGG	2 cut(s)	65, 134
HphI	GGTGA	1 cut(s)	776
Hpy166II	GTNNAC	6 cut(s)	70, 279, 298, 355, 526, 574
Hpy188I	TCNGA	1 cut(s)	33
Hpy188III	TCNNGA	1 cut(s)	819
Hpy8I	GTNNAC	6 cut(s)	70, 279, 298, 355, 526, 574
HpyAV	CCTTC	4 cut(s)	70, 118, 323, 647
HpyCH4III	ACNGT	3 cut(s)	276, 482, 673
HpyCH4IV	ACGT	1 cut(s)	796
HpyCH4V	TGCA	3 cut(s)	557, 590, 633
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpySE526I	ACGT	1 cut(s)	796
Hsp92II	CATG	3 cut(s)	59, 213, 506
Ksp22I	TGATCA	1 cut(s)	766
Kzo9I	GATC	3 cut(s)	109, 543, 766
LmnI	GCTCC	4 cut(s)	33, 136, 446, 506
Lsp1109I	GCAGC	1 cut(s)	451
LweI	GCATC	1 cut(s)	566
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	1 cut(s)	796
MaeIII	GTNAC	4 cut(s)	12, 97, 482, 637
MalI	GATC	3 cut(s)	111, 545, 768
MboI	GATC	3 cut(s)	109, 543, 766
MboII	GAAGA	4 cut(s)	60, 103, 182, 618
MfeI	CAATTG	2 cut(s)	196, 752
MflI	RGATCY	1 cut(s)	109
MlsI	TGGCCA	2 cut(s)	5, 214
MluCI	AATT	6 cut(s)	160, 196, 393, 427, 648, 752
MluNI	TGGCCA	2 cut(s)	5, 214
MlyI	GAGTC	2 cut(s)	65, 167
MmeI	TCCRAC	1 cut(s)	707
MnlI	CCTC	8 cut(s)	37, 44, 141, 194, 395, 398, 401, 460
Mox20I	TGGCCA	2 cut(s)	5, 214
MroXI	GAANNNNTTC	1 cut(s)	337
MscI	TGGCCA	2 cut(s)	5, 214
MseI	TTAA	3 cut(s)	603, 701, 741
Msp20I	TGGCCA	2 cut(s)	5, 214
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	2 cut(s)	65, 134
MspR9I	CCNGG	2 cut(s)	65, 134
MunI	CAATTG	2 cut(s)	196, 752
MwoI	GCNNNNNNNGC	1 cut(s)	461
NciI	CCSGG	2 cut(s)	65, 134
NdeII	GATC	3 cut(s)	109, 543, 766
NlaIII	CATG	3 cut(s)	59, 213, 506
NlaIV	GGNNCC	2 cut(s)	138, 192
NmuCI	GTSAC	2 cut(s)	12, 637
NspI	RCATGY	1 cut(s)	59
PaqCI	CACCTGC	1 cut(s)	752
PcsI	WCGNNNNNNNCGW	1 cut(s)	244
PdmI	GAANNNNTTC	1 cut(s)	337
PfeI	GAWTC	3 cut(s)	235, 249, 711
PflMI	CCANNNNNTGG	1 cut(s)	398
PfoI	TCCNGGA	1 cut(s)	132
PkrI	GCNGC	1 cut(s)	466
PleI	GAGTC	2 cut(s)	65, 167
PpsI	GAGTC	2 cut(s)	65, 167
PspN4I	GGNNCC	2 cut(s)	138, 192
PsuI	RGATCY	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	2 cut(s)	354, 518
RsaNI	GTAC	2 cut(s)	353, 517
SaqAI	TTAA	3 cut(s)	603, 701, 741
SatI	GCNGC	1 cut(s)	465
Sau3AI	GATC	3 cut(s)	109, 543, 766
SchI	GAGTC	2 cut(s)	65, 167
ScrFI	CCNGG	2 cut(s)	65, 134
SfaNI	GCATC	1 cut(s)	566
SfcI	CTRYAG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	6 cut(s)	160, 196, 393, 427, 648, 752
SsiI	CCGC	1 cut(s)	411
SspMI	CTAG	1 cut(s)	468
StyD4I	CCNGG	2 cut(s)	63, 132
TaaI	ACNGT	3 cut(s)	276, 482, 673
TaiI	ACGT	1 cut(s)	799
TaqI	TCGA	1 cut(s)	780
TasI	AATT	6 cut(s)	160, 196, 393, 427, 648, 752
TatI	WGTACW	2 cut(s)	352, 516
TfiI	GAWTC	3 cut(s)	235, 249, 711
Tru1I	TTAA	3 cut(s)	603, 701, 741
Tru9I	TTAA	3 cut(s)	603, 701, 741
TseFI	GTSAC	2 cut(s)	12, 637
TseI	GCWGC	1 cut(s)	464
Tsp45I	GTSAC	2 cut(s)	12, 637
TspDTI	ATGAA	4 cut(s)	198, 301, 342, 491
TspGWI	ACGGA	1 cut(s)	283
Van91I	CCANNNNNTGG	1 cut(s)	398
XceI	RCATGY	1 cut(s)	59
XmiI	GTMKAC	1 cut(s)	297
XmnI	GAANNNNTTC	1 cut(s)	337
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.