Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Reverse (-)

3810308 .. 3812210

Gene Structure 1903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG052500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCCACATTCTCACGTCCTATGGCTTCTTCAATTGCGAGACGTGCCCTAATTCCAGAGGACACTCCAAGCTTCTGCATTAAGATTGTCACTGATAATGACCTCCGAGATGGGAAGGAACTTCCCGAGATGGCTGTAAAGATATATCGAACCTGTATGGAAGACTCTATATTCCTCAAGGTACCAAATTGTGAGACATTATGGCCAATTGAAGTGAAAAAATCAGCTCATGGTGGCCGAATGTGGTTGCACAAGGGATGGCAAGAGTTTGCCAACTTTTACTCACTAGAGCAAGGATACTTGGTATTTGTGAGTTATAAAGGCGAGCATTCTCATTTCCAAGGGCGCATTTTCCATTGGAATGATGTGGAAATCGAGTACCCTATTCGCGGATCAGGAGGAACTGATGGCATACCAAAAAGGAAAATAACAAGATCTCATGGTGGCATGCCTAATGCATATTCAAAAGCAGCTAGAGCCATTTCAAATTCCTCTGGATCCTCGGGTAATGAACACCAAAATGTTCTTTCCACAGCTAACAGTTTCAAATCTGACAAGCCATTCATTATGATCAAAATGACAGCTTATTACTTGCGTAGAGAAATGTTTATAAGTGCATCTTTTGCCACAAAACATCTCTGTCGAGCAGGCGCTTCTTGTGACTTATCCCTACAGACTCCAGATATGAGAACTTGGATTGCTGAATTGATTGTGTATGAAACCACTGAGTCAAGAGTATTTGCAAAGATTAAAGGTGCTGGTTGGAAAGCATTTAAGGAGGAAAATCATCTCGAAGAAGGTGATGTCTGTGTGCTTGAGTTGATAGAGGAATGTAAATTCAGAGTTTCGATATTCCGAGCAAGAGTGAAGATTAACGAGTTAAATGAAGCTGGAAGGCCAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

301

Amino Acids

34.14

Weight (kDa)

8.74

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	191 - 287	2.1e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	318, 611
Acc65I	GGTACC	1 cut(s)	181
AccB1I	GGYRCC	1 cut(s)	181
AccII	CGCG	1 cut(s)	390
AciI	CCGC	1 cut(s)	390
AclWI	GGATC	3 cut(s)	400, 492, 505
AcoI	YGGCCR	3 cut(s)	3, 203, 235
AcsI	RAATTY	2 cut(s)	487, 836
AfaI	GTAC	2 cut(s)	183, 380
AfiI	CCNNNNNNNGG	1 cut(s)	389
AgsI	TTSAA	5 cut(s)	33, 212, 465, 486, 547
AjiI	CACGTC	2 cut(s)	17, 44
AjnI	CCWGG	1 cut(s)	898
AluBI	AGCT	6 cut(s)	72, 227, 473, 536, 584, 890
AluI	AGCT	6 cut(s)	72, 227, 473, 536, 584, 890
Alw26I	GTCTC	2 cut(s)	34, 188
AlwI	GGATC	3 cut(s)	400, 492, 505
Ama87I	CYCGRG	2 cut(s)	125, 502
AoxI	GGCC	4 cut(s)	3, 203, 235, 896
ApeKI	GCWGC	1 cut(s)	470
ApoI	RAATTY	2 cut(s)	487, 836
Asp718I	GGTACC	1 cut(s)	181
AspLEI	GCGC	2 cut(s)	348, 653
AsuHPI	GGTGA	1 cut(s)	812
AvaI	CYCGRG	2 cut(s)	125, 502
BaeGI	GKGCMC	1 cut(s)	49
BalI	TGGCCA	2 cut(s)	5, 205
BamHI	GGATCC	1 cut(s)	497
BanI	GGYRCC	1 cut(s)	181
BbsI	GAAGAC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	482
BccI	CCATC	4 cut(s)	104, 124, 252, 401
BciT130I	CCWGG	1 cut(s)	900
BciVI	GTATCC	1 cut(s)	290
BclI	TGATCA	1 cut(s)	570
BcoDI	GTCTC	2 cut(s)	34, 188
BfaI	CTAG	2 cut(s)	287, 474
BfmI	CTRYAG	1 cut(s)	671
BfoI	RGCGCY	1 cut(s)	654
BfuI	GTATCC	1 cut(s)	290
BglII	AGATCT	1 cut(s)	434
BisI	GCNGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	472
Bme1390I	CCNGG	1 cut(s)	900
BmeT110I	CYCGRG	2 cut(s)	125, 502
BmgBI	CACGTC	2 cut(s)	17, 44
BmiI	GGNNCC	2 cut(s)	183, 499
BmrFI	CCNGG	1 cut(s)	900
BmsI	GCATC	1 cut(s)	626
BpiI	GAAGAC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	663
BpuEI	CTTGAG	2 cut(s)	161, 836
BsaJI	CCNNGG	2 cut(s)	340, 501
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
BseBI	CCWGG	1 cut(s)	900
BseDI	CCNNGG	2 cut(s)	340, 501
BseGI	GGATG	1 cut(s)	263
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMII	CTCAG	1 cut(s)	717
BseSI	GKGCMC	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	482
Bsh1236I	CGCG	1 cut(s)	390
BshFI	GGCC	4 cut(s)	5, 205, 237, 898
BshNI	GGYRCC	1 cut(s)	181
BsiHKCI	CYCGRG	2 cut(s)	125, 502
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	2 cut(s)	34, 188
BsmBI	CGTCTC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	328
BsnI	GGCC	4 cut(s)	5, 205, 237, 898
BsoBI	CYCGRG	2 cut(s)	125, 502
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	4 cut(s)	392, 434, 497, 570
BspACI	CCGC	1 cut(s)	390
BspANI	GGCC	4 cut(s)	5, 205, 237, 898
BspCNI	CTCAG	1 cut(s)	718
BspFNI	CGCG	1 cut(s)	390
BspLI	GGNNCC	2 cut(s)	183, 499
BspPI	GGATC	3 cut(s)	400, 492, 505
BspT107I	GGYRCC	1 cut(s)	181
BssECI	CCNNGG	2 cut(s)	340, 501
BssMI	GATC	4 cut(s)	392, 434, 497, 570
BssT1I	CCWWGG	1 cut(s)	340
Bst2UI	CCWGG	1 cut(s)	900
Bst4CI	ACNGT	1 cut(s)	542
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstC8I	GCNNGC	3 cut(s)	326, 449, 649
BstDEI	CTNAG	1 cut(s)	726
BstF5I	GGATG	1 cut(s)	263
BstFNI	CGCG	1 cut(s)	390
BstH2I	RGCGCY	1 cut(s)	654
BstHHI	GCGC	2 cut(s)	348, 653
BstKTI	GATC	4 cut(s)	395, 437, 500, 573
BstMAI	GTCTC	2 cut(s)	34, 188
BstMBI	GATC	4 cut(s)	392, 434, 497, 570
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 476, 623
BstNI	CCWGG	1 cut(s)	900
BstNSI	RCATGY	1 cut(s)	451
BstSCI	CCNGG	1 cut(s)	898
BstSFI	CTRYAG	1 cut(s)	671
BstSLI	GKGCMC	1 cut(s)	49
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	482
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	2 cut(s)	434, 497
BstYI	RGATCY	2 cut(s)	434, 497
BsuI	GTATCC	1 cut(s)	290
BsuRI	GGCC	4 cut(s)	5, 205, 237, 898
BtrI	CACGTC	2 cut(s)	17, 44
BtsCI	GGATG	1 cut(s)	263
BtsIMutI	CAGTG	2 cut(s)	90, 723
Cac8I	GCNNGC	3 cut(s)	326, 449, 649
CfoI	GCGC	2 cut(s)	348, 653
Csp6I	GTAC	2 cut(s)	182, 379
CviAII	CATG	3 cut(s)	230, 440, 448
CviQI	GTAC	2 cut(s)	182, 379
DdeI	CTNAG	1 cut(s)	726
DpnI	GATC	4 cut(s)	394, 436, 499, 572
DpnII	GATC	4 cut(s)	392, 434, 497, 570
EaeI	YGGCCR	3 cut(s)	3, 203, 235
Eco130I	CCWWGG	1 cut(s)	340
Eco88I	CYCGRG	2 cut(s)	125, 502
EcoRII	CCWGG	1 cut(s)	898
EcoT14I	CCWWGG	1 cut(s)	340
EcoT22I	ATGCAT	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	340
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	3 cut(s)	233, 443, 451
FalI	AAGNNNNNCTT	2 cut(s)	604, 636
FatI	CATG	3 cut(s)	229, 439, 447
FbaI	TGATCA	1 cut(s)	570
Fnu4HI	GCNGC	1 cut(s)	471
FokI	GGATG	1 cut(s)	270
Fsp4HI	GCNGC	1 cut(s)	471
FspBI	CTAG	2 cut(s)	287, 474
GlaI	GCGC	2 cut(s)	347, 652
GluI	GCNGC	1 cut(s)	471
GsuI	CTGGAG	1 cut(s)	663
HaeII	RGCGCY	1 cut(s)	654
HaeIII	GGCC	4 cut(s)	5, 205, 237, 898
HhaI	GCGC	2 cut(s)	348, 653
Hin1II	CATG	3 cut(s)	233, 443, 451
Hin6I	GCGC	2 cut(s)	346, 651
HinP1I	GCGC	2 cut(s)	346, 651
HindIII	AAGCTT	1 cut(s)	70
HinfI	GANTC	3 cut(s)	164, 676, 728
HphI	GGTGA	1 cut(s)	812
Hpy188I	TCNGA	4 cut(s)	107, 553, 842, 857
Hpy188III	TCNNGA	7 cut(s)	56, 125, 396, 495, 680, 732, 791
HpyAV	CCTTC	3 cut(s)	109, 791, 888
HpyCH4III	ACNGT	1 cut(s)	542
HpyCH4IV	ACGT	2 cut(s)	16, 43
HpyCH4V	TGCA	5 cut(s)	78, 250, 458, 617, 743
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 476, 623
HpyF3I	CTNAG	1 cut(s)	726
HpySE526I	ACGT	2 cut(s)	16, 43
Hsp92II	CATG	3 cut(s)	233, 443, 451
HspAI	GCGC	2 cut(s)	346, 651
KpnI	GGTACC	1 cut(s)	185
Ksp22I	TGATCA	1 cut(s)	570
Kzo9I	GATC	4 cut(s)	392, 434, 497, 570
LpnPI	CCDG	9 cut(s)	69, 166, 381, 480, 633, 693, 744, 876, 885
Lsp1109I	GCAGC	1 cut(s)	482
LweI	GCATC	1 cut(s)	626
MaeI	CTAG	2 cut(s)	287, 474
MaeII	ACGT	2 cut(s)	16, 43
MaeIII	GTNAC	2 cut(s)	88, 659
MalI	GATC	4 cut(s)	394, 436, 499, 572
MboI	GATC	4 cut(s)	392, 434, 497, 570
MboII	GAAGA	4 cut(s)	21, 173, 806, 880
MfeI	CAATTG	2 cut(s)	33, 207
MflI	RGATCY	2 cut(s)	434, 497
MhlI	GDGCHC	1 cut(s)	49
MlsI	TGGCCA	2 cut(s)	5, 205
MluCI	AATT	7 cut(s)	33, 51, 187, 207, 487, 704, 836
MluNI	TGGCCA	2 cut(s)	5, 205
MlyI	GAGTC	3 cut(s)	158, 670, 737
MmeI	TCCRAC	1 cut(s)	743
MnlI	CCTC	8 cut(s)	52, 113, 185, 392, 502, 511, 772, 820
Mox20I	TGGCCA	2 cut(s)	5, 205
Mph1103I	ATGCAT	1 cut(s)	460
MscI	TGGCCA	2 cut(s)	5, 205
MseI	TTAA	5 cut(s)	81, 750, 774, 873, 881
MslI	CAYNNNNRTG	2 cut(s)	360, 519
Msp20I	TGGCCA	2 cut(s)	5, 205
MspR9I	CCNGG	1 cut(s)	900
MunI	CAATTG	2 cut(s)	33, 207
Mva1269I	GAATGC	1 cut(s)	328
MvaI	CCWGG	1 cut(s)	900
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	3 cut(s)	44, 476, 623
NdeII	GATC	4 cut(s)	392, 434, 497, 570
NlaIII	CATG	3 cut(s)	233, 443, 451
NlaIV	GGNNCC	2 cut(s)	183, 499
NmuCI	GTSAC	2 cut(s)	88, 659
NsiI	ATGCAT	1 cut(s)	460
NspI	RCATGY	1 cut(s)	451
PaeI	GCATGC	1 cut(s)	451
PctI	GAATGC	1 cut(s)	328
PkrI	GCNGC	1 cut(s)	472
PleI	GAGTC	3 cut(s)	158, 670, 736
PpsI	GAGTC	3 cut(s)	158, 670, 736
PsiI	TTATAA	2 cut(s)	318, 611
Psp6I	CCWGG	1 cut(s)	898
PspGI	CCWGG	1 cut(s)	898
PspN4I	GGNNCC	2 cut(s)	183, 499
PsuI	RGATCY	2 cut(s)	434, 497
RsaI	GTAC	2 cut(s)	183, 380
RsaNI	GTAC	2 cut(s)	182, 379
RseI	CAYNNNNRTG	2 cut(s)	360, 519
SaqAI	TTAA	5 cut(s)	81, 750, 774, 873, 881
SatI	GCNGC	1 cut(s)	471
Sau3AI	GATC	4 cut(s)	392, 434, 497, 570
SchI	GAGTC	3 cut(s)	158, 670, 737
ScrFI	CCNGG	1 cut(s)	900
SduI	GDGCHC	1 cut(s)	49
SfaNI	GCATC	1 cut(s)	626
SfcI	CTRYAG	1 cut(s)	671
SmiMI	CAYNNNNRTG	2 cut(s)	360, 519
SmlI	CTYRAG	2 cut(s)	176, 815
SmoI	CTYRAG	2 cut(s)	176, 815
SphI	GCATGC	1 cut(s)	451
Sse9I	AATT	7 cut(s)	33, 51, 187, 207, 487, 704, 836
SsiI	CCGC	1 cut(s)	390
SspMI	CTAG	2 cut(s)	287, 474
StyD4I	CCNGG	1 cut(s)	898
StyI	CCWWGG	1 cut(s)	340
TaaI	ACNGT	1 cut(s)	542
TaiI	ACGT	2 cut(s)	19, 46
TaqI	TCGA	5 cut(s)	148, 375, 643, 792, 848
TasI	AATT	7 cut(s)	33, 51, 187, 207, 487, 704, 836
Tru1I	TTAA	5 cut(s)	81, 750, 774, 873, 881
Tru9I	TTAA	5 cut(s)	81, 750, 774, 873, 881
TscAI	CASTG	2 cut(s)	97, 730
TseFI	GTSAC	2 cut(s)	88, 659
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	2 cut(s)	88, 659
TspDTI	ATGAA	4 cut(s)	525, 553, 732, 900
TspRI	CASTG	2 cut(s)	97, 730
XapI	RAATTY	2 cut(s)	487, 836
XceI	RCATGY	1 cut(s)	451
XspI	CTAG	2 cut(s)	287, 474
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.