Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006047.1

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Forward (+)

47327 .. 48269

Gene Structure 943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006047.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atggcagagtccatattcctcaaggctccaaattgtgggacatggtggccaattgaagtgaaaaggtcagttcgtggtggccggatgtggttacacaagggatggcaagactttgcaaacttttactcgctggaccagggctactttgcattgttcacctatgaaggcgaacattcccatttcctagtacgcctttttcactggaatgatatggaaatagactaccctattcatggaggaggagtgccaaaaaggaaaagaacaggaggtaatcgaaacacccctcctgcctatttagaggctagaaccagtccaacttcctctggatcctcgactgatgaaaaccaaaatgatctttccacagctactagtttcaaatctgacaagctacttcttatgctcagaatgacagctacatatatacgctgctctggcgcgtatattagtccatcttttgccaaggaacatgtctgcagaccaggcacttcatgcaatgtgaccctacaaatttcaaaggagaaagtttggactgctcaatgcactgttggtgaaaacagtgagcacaaactatatgcaagagtttcaggtgctggttggaaggcatttaaggaggacaatcatctggaagtacatgatgtctgtgtgtttgagtttattgaggagcgtacattcaaagtttccataatccgagctaaagtgaagatcaataagcaagatgaggaaagtgaagacaagctcatgatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

248

Amino Acids

28.33

Weight (kDa)

8.16

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	35
AccII	CGCG	1 cut(s)	437
AclWI	GGATC	2 cut(s)	321, 334
AcoI	YGGCCR	2 cut(s)	47, 79
AcsI	RAATTY	1 cut(s)	507
AfaI	GTAC	3 cut(s)	189, 630, 667
AfiI	CCNNNNNNNGG	2 cut(s)	35, 233
AflIII	ACRYGT	1 cut(s)	466
AgsI	TTSAA	4 cut(s)	56, 376, 513, 673
AhlI	ACTAGT	1 cut(s)	368
AjnI	CCWGG	2 cut(s)	135, 478
AluBI	AGCT	5 cut(s)	365, 388, 413, 692, 736
AluI	AGCT	5 cut(s)	365, 388, 413, 692, 736
Alw21I	GWGCWC	1 cut(s)	564
AlwI	GGATC	2 cut(s)	321, 334
AlwNI	CAGNNNCTG	1 cut(s)	590
AoxI	GGCC	2 cut(s)	47, 79
ApeKI	GCWGC	1 cut(s)	426
ApoI	RAATTY	1 cut(s)	507
AspLEI	GCGC	1 cut(s)	437
AspS9I	GGNCC	1 cut(s)	133
AsuHPI	GGTGA	2 cut(s)	148, 560
AvaII	GGWCC	1 cut(s)	133
BalI	TGGCCA	1 cut(s)	49
BamHI	GGATCC	1 cut(s)	326
BbsI	GAAGAC	1 cut(s)	735
Bbv12I	GWGCWC	1 cut(s)	564
BbvI	GCAGC	1 cut(s)	413
BccI	CCATC	2 cut(s)	96, 457
BciT130I	CCWGG	2 cut(s)	137, 480
BcuI	ACTAGT	1 cut(s)	368
BfaI	CTAG	3 cut(s)	185, 303, 369
BfmI	CTRYAG	1 cut(s)	472
BisI	GCNGC	1 cut(s)	427
BlsI	GCNGC	1 cut(s)	428
Bme1390I	CCNGG	2 cut(s)	137, 480
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	2 cut(s)	27, 328
BmrFI	CCNGG	2 cut(s)	137, 480
BpiI	GAAGAC	1 cut(s)	735
BpuEI	CTTGAG	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	136, 459
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 233
Bse1I	ACTGG	2 cut(s)	206, 309
Bse3DI	GCAATG	1 cut(s)	499
BseBI	CCWGG	2 cut(s)	137, 480
BseDI	CCNNGG	2 cut(s)	136, 459
BseGI	GGATG	2 cut(s)	90, 107
BseLI	CCNNNNNNNGG	2 cut(s)	35, 233
BseMI	GCAATG	1 cut(s)	499
BseMII	CTCAG	1 cut(s)	415
BseNI	ACTGG	2 cut(s)	206, 309
BseRI	GAGGAG	3 cut(s)	252, 255, 674
BseXI	GCAGC	1 cut(s)	413
Bsh1236I	CGCG	1 cut(s)	437
BshFI	GGCC	2 cut(s)	49, 81
BsiHKAI	GWGCWC	1 cut(s)	564
BsiSI	CCGG	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	2 cut(s)	35, 233
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	2 cut(s)	49, 81
Bsp1286I	GDGCHC	1 cut(s)	564
Bsp143I	GATC	3 cut(s)	326, 352, 702
BspANI	GGCC	2 cut(s)	49, 81
BspCNI	CTCAG	1 cut(s)	414
BspFNI	CGCG	1 cut(s)	437
BspHI	TCATGA	1 cut(s)	738
BspLI	GGNNCC	2 cut(s)	27, 328
BspMAI	CTGCAG	1 cut(s)	476
BspPI	GGATC	2 cut(s)	321, 334
BsrDI	GCAATG	1 cut(s)	499
BsrI	ACTGG	2 cut(s)	206, 309
BssECI	CCNNGG	2 cut(s)	136, 459
BssMI	GATC	3 cut(s)	326, 352, 702
BssT1I	CCWWGG	1 cut(s)	459
Bst2UI	CCWGG	2 cut(s)	137, 480
Bst4CI	ACNGT	2 cut(s)	544, 557
BstAPI	GCANNNNNTGC	1 cut(s)	489
BstDEI	CTNAG	1 cut(s)	401
BstF5I	GGATG	2 cut(s)	90, 107
BstFNI	CGCG	1 cut(s)	437
BstHHI	GCGC	1 cut(s)	437
BstKTI	GATC	3 cut(s)	329, 355, 705
BstMBI	GATC	3 cut(s)	326, 352, 702
BstMWI	GCNNNNNNNGC	3 cut(s)	432, 480, 489
BstNI	CCWGG	2 cut(s)	137, 480
BstNSI	RCATGY	1 cut(s)	470
BstSCI	CCNGG	2 cut(s)	135, 478
BstSFI	CTRYAG	1 cut(s)	472
BstUI	CGCG	1 cut(s)	437
BstV1I	GCAGC	1 cut(s)	413
BstV2I	GAAGAC	1 cut(s)	735
BstX2I	RGATCY	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	326
BsuRI	GGCC	2 cut(s)	49, 81
BtsCI	GGATG	2 cut(s)	90, 107
BtsIMutI	CAGTG	3 cut(s)	199, 540, 562
CaiI	CAGNNNCTG	1 cut(s)	590
CciI	TCATGA	1 cut(s)	738
CfoI	GCGC	1 cut(s)	437
Cfr13I	GGNCC	1 cut(s)	133
Csp6I	GTAC	3 cut(s)	188, 629, 666
CviAII	CATG	6 cut(s)	42, 233, 467, 489, 632, 739
CviQI	GTAC	3 cut(s)	188, 629, 666
DdeI	CTNAG	1 cut(s)	401
DpnI	GATC	3 cut(s)	328, 354, 704
DpnII	GATC	3 cut(s)	326, 352, 702
EaeI	YGGCCR	2 cut(s)	47, 79
Eco130I	CCWWGG	1 cut(s)	459
Eco47I	GGWCC	1 cut(s)	133
EcoRII	CCWGG	2 cut(s)	135, 478
EcoT14I	CCWWGG	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	6 cut(s)	45, 236, 470, 492, 635, 742
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	6 cut(s)	41, 232, 466, 488, 631, 738
Fnu4HI	GCNGC	1 cut(s)	427
FokI	GGATG	2 cut(s)	97, 114
Fsp4HI	GCNGC	1 cut(s)	427
FspBI	CTAG	3 cut(s)	185, 303, 369
GlaI	GCGC	1 cut(s)	436
GluI	GCNGC	1 cut(s)	427
HaeIII	GGCC	2 cut(s)	49, 81
HapII	CCGG	1 cut(s)	82
HhaI	GCGC	1 cut(s)	437
Hin1II	CATG	6 cut(s)	45, 236, 470, 492, 635, 742
Hin6I	GCGC	1 cut(s)	435
HinP1I	GCGC	1 cut(s)	435
HinfI	GANTC	1 cut(s)	8
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	2 cut(s)	148, 560
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188I	TCNGA	3 cut(s)	382, 404, 689
Hpy188III	TCNNGA	3 cut(s)	324, 623, 739
Hpy8I	GTNNAC	1 cut(s)	156
HpyAV	CCTTC	2 cut(s)	158, 592
HpyCH4III	ACNGT	2 cut(s)	544, 557
HpyCH4V	TGCA	6 cut(s)	116, 149, 474, 492, 540, 575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	432, 480, 489
HpyF3I	CTNAG	1 cut(s)	401
Hsp92II	CATG	6 cut(s)	45, 236, 470, 492, 635, 742
HspAI	GCGC	1 cut(s)	435
Kzo9I	GATC	3 cut(s)	326, 352, 702
LmnI	GCTCC	2 cut(s)	31, 661
Lsp1109I	GCAGC	1 cut(s)	413
MaeI	CTAG	3 cut(s)	185, 303, 369
MaeIII	GTNAC	2 cut(s)	90, 496
MalI	GATC	3 cut(s)	328, 354, 704
MboI	GATC	3 cut(s)	326, 352, 702
MboII	GAAGA	2 cut(s)	712, 740
MfeI	CAATTG	1 cut(s)	51
MflI	RGATCY	1 cut(s)	326
MhlI	GDGCHC	1 cut(s)	564
MlsI	TGGCCA	1 cut(s)	49
MluCI	AATT	3 cut(s)	31, 51, 507
MluNI	TGGCCA	1 cut(s)	49
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	2 cut(s)	338, 575
Mox20I	TGGCCA	1 cut(s)	49
MscI	TGGCCA	1 cut(s)	49
MseI	TTAA	1 cut(s)	606
MslI	CAYNNNNRTG	1 cut(s)	204
Msp20I	TGGCCA	1 cut(s)	49
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	2 cut(s)	137, 480
MunI	CAATTG	1 cut(s)	51
MvaI	CCWGG	2 cut(s)	137, 480
MvnI	CGCG	1 cut(s)	437
MwoI	GCNNNNNNNGC	3 cut(s)	432, 480, 489
NdeII	GATC	3 cut(s)	326, 352, 702
NlaIII	CATG	6 cut(s)	45, 236, 470, 492, 635, 742
NlaIV	GGNNCC	2 cut(s)	27, 328
NmuCI	GTSAC	1 cut(s)	496
NspI	RCATGY	1 cut(s)	470
PagI	TCATGA	1 cut(s)	738
PciI	ACATGT	1 cut(s)	466
PflMI	CCANNNNNTGG	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	428
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PscI	ACATGT	1 cut(s)	466
Psp6I	CCWGG	2 cut(s)	135, 478
PspGI	CCWGG	2 cut(s)	135, 478
PspN4I	GGNNCC	2 cut(s)	27, 328
PspPI	GGNCC	1 cut(s)	133
PstI	CTGCAG	1 cut(s)	476
PstNI	CAGNNNCTG	1 cut(s)	590
PsuI	RGATCY	1 cut(s)	326
RsaI	GTAC	3 cut(s)	189, 630, 667
RsaNI	GTAC	3 cut(s)	188, 629, 666
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	606
SatI	GCNGC	1 cut(s)	427
Sau3AI	GATC	3 cut(s)	326, 352, 702
Sau96I	GGNCC	1 cut(s)	133
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	2 cut(s)	137, 480
SduI	GDGCHC	1 cut(s)	564
SetI	ASST	9 cut(s)	68, 161, 271, 367, 390, 415, 589, 694, 738
SfcI	CTRYAG	1 cut(s)	472
SinI	GGWCC	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
SpeI	ACTAGT	1 cut(s)	368
Sse9I	AATT	3 cut(s)	31, 51, 507
SspMI	CTAG	3 cut(s)	185, 303, 369
StyD4I	CCNGG	2 cut(s)	135, 478
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	2 cut(s)	544, 557
TaqI	TCGA	2 cut(s)	274, 332
TasI	AATT	3 cut(s)	31, 51, 507
TatI	WGTACW	1 cut(s)	628
Tru1I	TTAA	1 cut(s)	606
Tru9I	TTAA	1 cut(s)	606
TscAI	CASTG	3 cut(s)	206, 547, 562
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	1 cut(s)	426
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	4 cut(s)	177, 221, 354, 477
TspRI	CASTG	3 cut(s)	206, 547, 562
Van91I	CCANNNNNTGG	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	133
XapI	RAATTY	1 cut(s)	507
XceI	RCATGY	1 cut(s)	470
XspI	CTAG	3 cut(s)	185, 303, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.