Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009005.1

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Reverse (-)

69135 .. 70955

Gene Structure 1821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009005.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

atgtcacgcccaatggcttctcggagcaagagagagggaagaggacatgccttcccggtggactctccaagcttctgcttgaagattgttactgctgtggatctccaagatgggaaggaacttccagagccagctgtgacgaagtatgggattaattgtatggcagactccatattcctccaggttcccaattgcggaacatcatggccagtagaactgaaaaaaacgattcgtggtagccgaatctggttacaaaaaggatgggaacgattcacagacttttactccatagaccaagattacttcatagtgttcagctatgaaggtgaacattcttatttccaagtacacattttcaactgcagcaatatggaaataggttacccaatttgtggaggagctggtggatgcatgtctacacccaattcaaaaggtacctcctttccctctgcatcatctgctggcagagaccaaaacaatgacaaccaacgtgacttttatggagctaacaatttcaaattcggggacaagcctagttttcgggtcacaatgactgaaaaatacttatcatctctcttgagagtaccttcggatttcaccatcgaacatttgtgtgaaatagggtctcattctactgtgaccttacagacttctggtgagagaacatggactgttcagtgtgctgtcagcaaatgtgggaaaaatgcaagattcaatcgtgctagttggagaggatttgtgaagggcaatcaattggaagcaggtgatgattgtctgtttgagttgataggcgaacgtatgctcaaagtcaacatatcccgagctaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

276

Amino Acids

30.92

Weight (kDa)

8.48

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	752
Acc36I	ACCTGC	1 cut(s)	752
Acc65I	GGTACC	1 cut(s)	434
AccB1I	GGYRCC	1 cut(s)	434
AccB7I	CCANNNNNTGG	1 cut(s)	392
AccI	GTMKAC	1 cut(s)	416
AciI	CCGC	1 cut(s)	195
AclWI	GGATC	1 cut(s)	108
AcoI	YGGCCR	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	518
AfaI	GTAC	3 cut(s)	348, 436, 585
AfiI	CCNNNNNNNGG	2 cut(s)	194, 392
AgsI	TTSAA	5 cut(s)	82, 358, 429, 517, 715
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	6 cut(s)	72, 134, 318, 401, 506, 824
AluI	AGCT	6 cut(s)	72, 134, 318, 401, 506, 824
Alw26I	GTCTC	2 cut(s)	462, 630
AlwI	GGATC	1 cut(s)	108
Ama87I	CYCGRG	1 cut(s)	819
AoxI	GGCC	1 cut(s)	206
ApeKI	GCWGC	1 cut(s)	363
ApoI	RAATTY	1 cut(s)	518
AseI	ATTAAT	1 cut(s)	153
Asp718I	GGTACC	1 cut(s)	434
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	4 cut(s)	338, 589, 668, 776
AvaI	CYCGRG	1 cut(s)	819
BalI	TGGCCA	1 cut(s)	208
BanI	GGYRCC	1 cut(s)	434
BbvI	GCAGC	1 cut(s)	375
BccI	CCATC	3 cut(s)	104, 255, 608
BciT130I	CCWGG	1 cut(s)	182
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	2 cut(s)	462, 630
BfaI	CTAG	2 cut(s)	534, 723
BfmI	CTRYAG	1 cut(s)	361
BfuAI	ACCTGC	1 cut(s)	752
BisI	GCNGC	1 cut(s)	364
BlsI	GCNGC	1 cut(s)	365
Bme1390I	CCNGG	2 cut(s)	56, 182
BmeT110I	CYCGRG	1 cut(s)	819
BmiI	GGNNCC	2 cut(s)	186, 436
BmrFI	CCNGG	2 cut(s)	56, 182
BmsI	GCATC	2 cut(s)	398, 461
BpmI	CTGGAG	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	598
BpuMI	CCSGG	1 cut(s)	56
BsaI	GGTCTC	2 cut(s)	462, 630
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 392
Bse1I	ACTGG	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	182
BseGI	GGATG	2 cut(s)	266, 413
BseLI	CCNNNNNNNGG	2 cut(s)	194, 392
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	411
BseXI	GCAGC	1 cut(s)	375
BshFI	GGCC	1 cut(s)	208
BshNI	GGYRCC	1 cut(s)	434
BsiHKCI	CYCGRG	1 cut(s)	819
BsiSI	CCGG	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	539
BslI	CCNNNNNNNGG	2 cut(s)	194, 392
BsmAI	GTCTC	2 cut(s)	462, 630
BsmFI	GGGAC	1 cut(s)	539
BsnI	GGCC	1 cut(s)	208
Bso31I	GGTCTC	2 cut(s)	462, 630
BsoBI	CYCGRG	1 cut(s)	819
Bsp143I	GATC	1 cut(s)	100
BspACI	CCGC	1 cut(s)	195
BspANI	GGCC	1 cut(s)	208
BspLI	GGNNCC	2 cut(s)	186, 436
BspMAI	CTGCAG	1 cut(s)	365
BspMI	ACCTGC	1 cut(s)	752
BspPI	GGATC	1 cut(s)	108
BspT107I	GGYRCC	1 cut(s)	434
BspTNI	GGTCTC	2 cut(s)	462, 630
BsrI	ACTGG	1 cut(s)	209
BssMI	GATC	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	2 cut(s)	637, 673
Bst6I	CTCTTC	1 cut(s)	34
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstC8I	GCNNGC	2 cut(s)	132, 463
BstEII	GGTNACC	1 cut(s)	380
BstF5I	GGATG	2 cut(s)	266, 413
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	2 cut(s)	462, 630
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstNI	CCWGG	1 cut(s)	182
BstNSI	RCATGY	2 cut(s)	50, 415
BstPI	GGTNACC	1 cut(s)	380
BstSCI	CCNGG	2 cut(s)	54, 180
BstSFI	CTRYAG	1 cut(s)	361
BstV1I	GCAGC	1 cut(s)	375
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	208
BtsCI	GGATG	2 cut(s)	266, 413
BtsIMutI	CAGTG	1 cut(s)	683
BveI	ACCTGC	1 cut(s)	752
Cac8I	GCNNGC	2 cut(s)	132, 463
Csp6I	GTAC	3 cut(s)	347, 435, 584
CviAII	CATG	4 cut(s)	47, 204, 412, 666
CviQI	GTAC	3 cut(s)	347, 435, 584
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
EaeI	YGGCCR	1 cut(s)	206
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
Eco31I	GGTCTC	2 cut(s)	462, 630
Eco88I	CYCGRG	1 cut(s)	819
Eco91I	GGTNACC	1 cut(s)	380
EcoO65I	GGTNACC	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	180
EcoT22I	ATGCAT	1 cut(s)	413
FaeI	CATG	4 cut(s)	50, 207, 415, 669
FaqI	GGGAC	1 cut(s)	539
FatI	CATG	4 cut(s)	46, 203, 411, 665
FblI	GTMKAC	1 cut(s)	416
Fnu4HI	GCNGC	1 cut(s)	364
FokI	GGATG	2 cut(s)	273, 420
Fsp4HI	GCNGC	1 cut(s)	364
FspBI	CTAG	2 cut(s)	534, 723
GluI	GCNGC	1 cut(s)	364
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	208
HapII	CCGG	1 cut(s)	56
Hin1II	CATG	4 cut(s)	50, 207, 415, 669
HincII	GTYRAC	1 cut(s)	811
HindII	GTYRAC	1 cut(s)	811
HindIII	AAGCTT	1 cut(s)	70
HinfI	GANTC	6 cut(s)	62, 167, 229, 243, 270, 711
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	4 cut(s)	338, 589, 668, 776
Hpy166II	GTNNAC	5 cut(s)	61, 329, 349, 417, 811
Hpy188I	TCNGA	2 cut(s)	24, 592
Hpy188III	TCNNGA	3 cut(s)	125, 577, 819
Hpy8I	GTNNAC	5 cut(s)	61, 329, 349, 417, 811
HpyAV	CCTTC	5 cut(s)	61, 109, 317, 597, 736
HpyCH4III	ACNGT	2 cut(s)	637, 673
HpyCH4IV	ACGT	2 cut(s)	490, 796
HpyCH4V	TGCA	4 cut(s)	363, 411, 452, 707
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
HpySE526I	ACGT	2 cut(s)	490, 796
Hsp92II	CATG	4 cut(s)	50, 207, 415, 669
KpnI	GGTACC	1 cut(s)	438
Kzo9I	GATC	1 cut(s)	100
LmnI	GCTCC	3 cut(s)	24, 398, 503
Lsp1109I	GCAGC	1 cut(s)	375
LweI	GCATC	2 cut(s)	398, 461
MaeI	CTAG	2 cut(s)	534, 723
MaeII	ACGT	2 cut(s)	490, 796
MaeIII	GTNAC	8 cut(s)	3, 88, 136, 249, 380, 491, 544, 637
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	2 cut(s)	51, 94
MfeI	CAATTG	2 cut(s)	190, 752
MflI	RGATCY	1 cut(s)	100
MlsI	TGGCCA	1 cut(s)	208
MluCI	AATT	7 cut(s)	154, 190, 387, 424, 511, 518, 752
MluNI	TGGCCA	1 cut(s)	208
MlyI	GAGTC	2 cut(s)	56, 161
MmeI	TCCRAC	1 cut(s)	707
MnlI	CCTC	7 cut(s)	28, 35, 188, 389, 448, 457, 725
Mox20I	TGGCCA	1 cut(s)	208
Mph1103I	ATGCAT	1 cut(s)	413
MscI	TGGCCA	1 cut(s)	208
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	1 cut(s)	612
Msp20I	TGGCCA	1 cut(s)	208
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	2 cut(s)	56, 182
MunI	CAATTG	2 cut(s)	190, 752
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	1 cut(s)	458
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	4 cut(s)	50, 207, 415, 669
NlaIV	GGNNCC	2 cut(s)	186, 436
NmuCI	GTSAC	5 cut(s)	3, 136, 491, 544, 637
NsiI	ATGCAT	1 cut(s)	413
NspI	RCATGY	2 cut(s)	50, 415
PaqCI	CACCTGC	1 cut(s)	752
PcsI	WCGNNNNNNNCGW	1 cut(s)	238
PfeI	GAWTC	4 cut(s)	229, 243, 270, 711
PflMI	CCANNNNNTGG	1 cut(s)	392
PkrI	GCNGC	1 cut(s)	365
PleI	GAGTC	2 cut(s)	56, 161
PpsI	GAGTC	2 cut(s)	56, 161
PshBI	ATTAAT	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	180
PspEI	GGTNACC	1 cut(s)	380
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	2 cut(s)	186, 436
PstI	CTGCAG	1 cut(s)	365
PsuI	RGATCY	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	3 cut(s)	348, 436, 585
RsaNI	GTAC	3 cut(s)	347, 435, 584
RseI	CAYNNNNRTG	1 cut(s)	612
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	364
Sau3AI	GATC	1 cut(s)	100
SchI	GAGTC	2 cut(s)	56, 161
ScrFI	CCNGG	2 cut(s)	56, 182
SfaNI	GCATC	2 cut(s)	398, 461
SfcI	CTRYAG	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	612
SmlI	CTYRAG	1 cut(s)	577
SmoI	CTYRAG	1 cut(s)	577
Sse9I	AATT	7 cut(s)	154, 190, 387, 424, 511, 518, 752
SsiI	CCGC	1 cut(s)	195
SspMI	CTAG	2 cut(s)	534, 723
StyD4I	CCNGG	2 cut(s)	54, 180
TaaI	ACNGT	2 cut(s)	637, 673
TaiI	ACGT	2 cut(s)	493, 799
TaqI	TCGA	1 cut(s)	603
TasI	AATT	7 cut(s)	154, 190, 387, 424, 511, 518, 752
TatI	WGTACW	1 cut(s)	346
TfiI	GAWTC	4 cut(s)	229, 243, 270, 711
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	683
TseFI	GTSAC	5 cut(s)	3, 136, 491, 544, 637
TseI	GCWGC	1 cut(s)	363
Tsp45I	GTSAC	5 cut(s)	3, 136, 491, 544, 637
TspDTI	ATGAA	2 cut(s)	295, 336
TspRI	CASTG	1 cut(s)	683
Van91I	CCANNNNNTGG	1 cut(s)	392
VspI	ATTAAT	1 cut(s)	153
XapI	RAATTY	1 cut(s)	518
XceI	RCATGY	2 cut(s)	50, 415
XmiI	GTMKAC	1 cut(s)	416
XspI	CTAG	2 cut(s)	534, 723
Zsp2I	ATGCAT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.