Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Forward (+)

68580420 .. 68582580

Gene Structure 2161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG428100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGGGGAGAGGAACCGAAATGGAAAACGACCCGCCGTTTGTGAGGAGTCTAAGGGGTTCTGCTTGAGGATTCAGAGTCGTGAGGATCTCAAAGATGGGAAGAAGGAACTTCCGCCGGCAGCTGTGAGGAAGTATGGAGATCAAATGGCAGACCATATATTCCTGAAGGTTCCCAATTGTGGAAAACATTGGAAAATAGAATTGAGAACATCACCTCGTCGTGACCGGATGTGGTTAGAAAAGGGATGGGAAGAGTTTGCTAGCTTTTATTTACTGGACCAAGGCGACTTGGCAACCTTCAGCTGTGAAGGTGAACATGCCCATTTCCAAATACGCATCTTTAGTTGGGACGATATGGAAATATATTACCCTATTCGTGGAGGAGGAGTTGATGTCAGCGGACCAAAAAGGAAAGAAACAAGAGTTGAAGCTGAAGCTGAAGCTAGAGCCATTTCAATTTCCCCCAGATCCTCTGCTGATGAACACCAATATGATATTTCCAAAGTGAGCAGTTTCAGATCTGACAAGCCATGTCTTAATGTCCAAATCACAGCTACATCCTTAACCAATCGTGTGGTAAGCGTTTCTCAACAATTGCGTACAAGAGAGATTCACGAGTTTGGGCATAATGCACTCCTTCGAGGAGGAATGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

218

Amino Acids

24.96

Weight (kDa)

8.51

Isoelectric Point (pI)

50.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	29 - 115	1.2e-10	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	33, 113, 399
AclWI	GGATC	2 cut(s)	93, 462
AcuI	CTGAAG	4 cut(s)	185, 283, 453, 459
AfaI	GTAC	1 cut(s)	601
AfiI	CCNNNNNNNGG	2 cut(s)	179, 377
AgsI	TTSAA	2 cut(s)	428, 456
AluBI	AGCT	7 cut(s)	122, 264, 303, 431, 437, 443, 554
AluI	AGCT	7 cut(s)	122, 264, 303, 431, 437, 443, 554
AlwI	GGATC	2 cut(s)	93, 462
ApeKI	GCWGC	1 cut(s)	119
ArsI	GACNNNNNNTTYG	2 cut(s)	21, 53
AspS9I	GGNCC	2 cut(s)	277, 401
AsuHPI	GGTGA	2 cut(s)	204, 323
AsuNHI	GCTAGC	1 cut(s)	260
AvaII	GGWCC	2 cut(s)	277, 401
BauI	CACGAG	1 cut(s)	614
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	2 cut(s)	89, 240
BceAI	ACGGC	1 cut(s)	20
BfaI	CTAG	3 cut(s)	261, 444, 655
BglII	AGATCT	1 cut(s)	518
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme18I	GGWCC	2 cut(s)	277, 401
BmgT120I	GGNCC	2 cut(s)	277, 401
BmiI	GGNNCC	2 cut(s)	14, 171
BmsI	GCATC	1 cut(s)	345
BmtI	GCTAGC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	85
BsaJI	CCNNGG	1 cut(s)	280
BsaWI	WCCGGW	1 cut(s)	225
BsaXI	ACNNNNNCTCC	4 cut(s)	372, 378, 402, 408
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 377
Bse118I	RCCGGY	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	3 cut(s)	234, 251, 557
BseLI	CCNNNNNNNGG	2 cut(s)	179, 377
BseNI	ACTGG	1 cut(s)	279
BseRI	GAGGAG	4 cut(s)	59, 396, 399, 657
BseXI	GCAGC	1 cut(s)	131
BsiSI	CCGG	2 cut(s)	116, 226
BslFI	GGGAC	1 cut(s)	362
BslI	CCNNNNNNNGG	2 cut(s)	179, 377
BsmFI	GGGAC	1 cut(s)	362
Bsp143I	GATC	4 cut(s)	85, 139, 467, 518
BspACI	CCGC	3 cut(s)	33, 113, 399
BspLI	GGNNCC	2 cut(s)	14, 171
BspOI	GCTAGC	1 cut(s)	264
BspPI	GGATC	2 cut(s)	93, 462
BsrFI	RCCGGY	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	279
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	4 cut(s)	85, 139, 467, 518
BssSI	CACGAG	1 cut(s)	614
BssT1I	CCWWGG	1 cut(s)	280
Bst2BI	CACGAG	1 cut(s)	614
Bst6I	CTCTTC	1 cut(s)	246
BstC8I	GCNNGC	2 cut(s)	117, 262
BstDEI	CTNAG	1 cut(s)	51
BstF5I	GGATG	3 cut(s)	234, 251, 557
BstKTI	GATC	4 cut(s)	88, 142, 470, 521
BstMBI	GATC	4 cut(s)	85, 139, 467, 518
BstNSI	RCATGY	1 cut(s)	320
BstV1I	GCAGC	1 cut(s)	131
BstX2I	RGATCY	3 cut(s)	85, 467, 518
BstXI	CCANNNNNNTGG	1 cut(s)	574
BstYI	RGATCY	3 cut(s)	85, 467, 518
BtsCI	GGATG	3 cut(s)	234, 251, 557
Cac8I	GCNNGC	2 cut(s)	117, 262
Cfr10I	RCCGGY	1 cut(s)	115
Cfr13I	GGNCC	2 cut(s)	277, 401
Csp6I	GTAC	1 cut(s)	600
CviAII	CATG	2 cut(s)	317, 531
CviJI	RGCY	9 cut(s)	122, 264, 303, 431, 437, 443, 449, 529, 554
CviKI_1	RGCY	9 cut(s)	122, 264, 303, 431, 437, 443, 449, 529, 554
CviQI	GTAC	1 cut(s)	600
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	4 cut(s)	87, 141, 469, 520
DpnII	GATC	4 cut(s)	85, 139, 467, 518
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
EciI	GGCGGA	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	280
Eco47I	GGWCC	2 cut(s)	277, 401
Eco57I	CTGAAG	4 cut(s)	185, 283, 453, 459
EcoT14I	CCWWGG	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	2 cut(s)	320, 534
FaiI	YATR	9 cut(s)	135, 156, 158, 318, 356, 364, 492, 532, 627
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	2 cut(s)	316, 530
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	3 cut(s)	241, 258, 544
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	3 cut(s)	261, 444, 655
GluI	GCNGC	1 cut(s)	120
HapII	CCGG	2 cut(s)	116, 226
Hin1II	CATG	2 cut(s)	320, 534
HinfI	GANTC	4 cut(s)	47, 70, 76, 610
HpaII	CCGG	2 cut(s)	116, 226
HphI	GGTGA	2 cut(s)	204, 323
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	3 cut(s)	75, 518, 523
Hpy188III	TCNNGA	4 cut(s)	80, 163, 221, 614
Hpy8I	GTNNAC	1 cut(s)	314
Hpy99I	CGWCG	1 cut(s)	222
HpyAV	CCTTC	5 cut(s)	97, 160, 302, 307, 647
HpyCH4V	TGCA	1 cut(s)	632
HpyF3I	CTNAG	1 cut(s)	51
Hsp92II	CATG	2 cut(s)	320, 534
KroI	GCCGGC	1 cut(s)	115
KroNI	GCCGGC	1 cut(s)	117
Kzo9I	GATC	4 cut(s)	85, 139, 467, 518
LpnPI	CCDG	5 cut(s)	129, 176, 239, 260, 478
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	1 cut(s)	345
MaeI	CTAG	3 cut(s)	261, 444, 655
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	4 cut(s)	87, 141, 469, 520
MboI	GATC	4 cut(s)	85, 139, 467, 518
MboII	GAAGA	2 cut(s)	112, 263
MfeI	CAATTG	2 cut(s)	175, 593
MflI	RGATCY	3 cut(s)	85, 467, 518
MluCI	AATT	4 cut(s)	175, 200, 456, 593
MlyI	GAGTC	2 cut(s)	56, 85
MroNI	GCCGGC	1 cut(s)	115
MseI	TTAA	2 cut(s)	537, 563
MslI	CAYNNNNRTG	1 cut(s)	489
MspA1I	CMGCKG	3 cut(s)	122, 303, 399
MspI	CCGG	2 cut(s)	116, 226
MunI	CAATTG	2 cut(s)	175, 593
NaeI	GCCGGC	1 cut(s)	117
NdeII	GATC	4 cut(s)	85, 139, 467, 518
NgoMIV	GCCGGC	1 cut(s)	115
NheI	GCTAGC	1 cut(s)	260
NlaIII	CATG	2 cut(s)	320, 534
NlaIV	GGNNCC	2 cut(s)	14, 171
NmuCI	GTSAC	1 cut(s)	221
NspI	RCATGY	1 cut(s)	320
PdiI	GCCGGC	1 cut(s)	117
PfeI	GAWTC	2 cut(s)	70, 610
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	2 cut(s)	55, 84
PpsI	GAGTC	2 cut(s)	55, 84
PspN4I	GGNNCC	2 cut(s)	14, 171
PspPI	GGNCC	2 cut(s)	277, 401
PsuI	RGATCY	3 cut(s)	85, 467, 518
PvuII	CAGCTG	2 cut(s)	122, 303
RsaI	GTAC	1 cut(s)	601
RsaNI	GTAC	1 cut(s)	600
RseI	CAYNNNNRTG	1 cut(s)	489
SaqAI	TTAA	2 cut(s)	537, 563
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	4 cut(s)	85, 139, 467, 518
Sau96I	GGNCC	2 cut(s)	277, 401
SchI	GAGTC	2 cut(s)	56, 85
SfaNI	GCATC	1 cut(s)	345
SinI	GGWCC	2 cut(s)	277, 401
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
Sse9I	AATT	4 cut(s)	175, 200, 456, 593
SsiI	CCGC	3 cut(s)	33, 113, 399
SspMI	CTAG	3 cut(s)	261, 444, 655
StyI	CCWWGG	1 cut(s)	280
TaqI	TCGA	1 cut(s)	640
TasI	AATT	4 cut(s)	175, 200, 456, 593
TfiI	GAWTC	2 cut(s)	70, 610
Tru1I	TTAA	2 cut(s)	537, 563
Tru9I	TTAA	2 cut(s)	537, 563
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	1 cut(s)	495
VpaK11BI	GGWCC	2 cut(s)	277, 401
XceI	RCATGY	1 cut(s)	320
XspI	CTAG	3 cut(s)	261, 444, 655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.