Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Reverse (-)

68207274 .. 68209491

Gene Structure 2218 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G041310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGGGGAGAGGAGCCGAAATGGAAAACGACCAGCCGTTTGTGAGGAGTCTAAGGGGTTCTGCTTGAGGATTCAGAGTCGTGAGGATCTCAAAGATGGGAAGAAGGAACTTCCGCCGGCAGCTGTGAGGAAGTATGGAGATCAAATGGCAGACCATATATTCCTGAAGGTTCCCAATTGTGGAAAACATTGGAAAATAGAATTGAGAACATCACCTCGTCGTGACCGGATGTGGTTAGAAAACGGATGGGAAGAGTTTACTACCTTTTATTTACTGGACCAAGGCGACTTGGCAACCTTCAGCTCTGAAGGTGAACATGCCCATTTCCAAATACGCATCTTTAGTTGGGACGATATGGAAATATATTACCCTATTCGTGGAGGAGGAGTTGATGTCAGCGGACCAAAAAGGAAAGAAACAAGAGTTGAAGCTGAAGCTGAAGCTGAAGCTAGAGCCATTTCAATTTCCCCCAGATCCTCTGCTGATGAACACCAATATGATATTTCCAAAGTGAGCAGTTTCAGATCTGACAAGCCATGTCTTAATGTCCAAATCACAGCTACATCCTTAACCAATCGTGTGTTCATAAATCCAGAATTTGCGTTGGAACATTTCTGTAAAGAAGGCTCTTGTTGTGACTTGTCCTTACAGAATGCTCTAGGTGACAGGATTTGGACGGTTCAGTGCATTTCTTACACAATAAGTGATGGAAGAATGCGAACAGTAATATCAGGAGCTGGTTGGAAATCCTTTAGGCAGGACAATCATCTAGAAGAGGGTGACGTCCTAGTGTTGGAGTTGATAGAGGAACGTAGGTGCAGAGTTTCGATAATCCGGGCTCAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

282

Amino Acids

32.31

Weight (kDa)

6.42

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	29 - 115	2.2e-09	B3 DNA binding domain
B3	PF02362	191 - 280	1.5e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	786
AciI	CCGC	2 cut(s)	113, 399
AclWI	GGATC	2 cut(s)	93, 468
AcsI	RAATTY	1 cut(s)	596
AcuI	CTGAAG	6 cut(s)	185, 283, 327, 453, 459, 465
AcyI	GRCGYC	1 cut(s)	783
AfiI	CCNNNNNNNGG	3 cut(s)	179, 377, 793
AgsI	TTSAA	2 cut(s)	428, 462
AjuI	GAANNNNNNNTTGG	2 cut(s)	566, 598
AluBI	AGCT	8 cut(s)	122, 303, 431, 437, 443, 449, 560, 737
AluI	AGCT	8 cut(s)	122, 303, 431, 437, 443, 449, 560, 737
AlwI	GGATC	2 cut(s)	93, 468
AlwNI	CAGNNNCTG	1 cut(s)	737
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	1 cut(s)	596
ArsI	GACNNNNNNTTYG	2 cut(s)	21, 53
AspS9I	GGNCC	2 cut(s)	277, 401
AsuC2I	CCSGG	1 cut(s)	836
AsuHPI	GGTGA	4 cut(s)	204, 323, 674, 791
AvaII	GGWCC	2 cut(s)	277, 401
BanII	GRGCYC	1 cut(s)	841
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	3 cut(s)	89, 240, 701
BceAI	ACGGC	1 cut(s)	20
BcnI	CCSGG	1 cut(s)	836
BfaI	CTAG	4 cut(s)	450, 659, 770, 788
BglII	AGATCT	1 cut(s)	524
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	836
Bme18I	GGWCC	2 cut(s)	277, 401
BmgT120I	GGNCC	2 cut(s)	277, 401
BmiI	GGNNCC	2 cut(s)	14, 171
BmrFI	CCNGG	1 cut(s)	836
BmsI	GCATC	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	85
BpuMI	CCSGG	1 cut(s)	836
BsaHI	GRCGYC	1 cut(s)	783
BsaJI	CCNNGG	1 cut(s)	280
BsaWI	WCCGGW	1 cut(s)	225
BsaXI	ACNNNNNCTCC	4 cut(s)	372, 378, 402, 408
Bsc4I	CCNNNNNNNGG	3 cut(s)	179, 377, 793
Bse118I	RCCGGY	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	3 cut(s)	234, 251, 563
BseLI	CCNNNNNNNGG	3 cut(s)	179, 377, 793
BseNI	ACTGG	1 cut(s)	279
BseRI	GAGGAG	4 cut(s)	25, 59, 396, 399
BseXI	GCAGC	1 cut(s)	131
BsgI	GTGCAG	1 cut(s)	838
BsiSI	CCGG	3 cut(s)	116, 226, 835
BslFI	GGGAC	1 cut(s)	362
BslI	CCNNNNNNNGG	3 cut(s)	179, 377, 793
BsmFI	GGGAC	1 cut(s)	362
BsmI	GAATGC	2 cut(s)	658, 720
Bsp1286I	GDGCHC	1 cut(s)	841
Bsp143I	GATC	4 cut(s)	85, 139, 473, 524
BspACI	CCGC	2 cut(s)	113, 399
BspLI	GGNNCC	2 cut(s)	14, 171
BspPI	GGATC	2 cut(s)	93, 468
BsrFI	RCCGGY	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	279
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	4 cut(s)	85, 139, 473, 524
BssNI	GRCGYC	1 cut(s)	783
BssT1I	CCWWGG	1 cut(s)	280
Bst4CI	ACNGT	2 cut(s)	679, 724
Bst6I	CTCTTC	2 cut(s)	246, 768
BstACI	GRCGYC	1 cut(s)	783
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	51
BstF5I	GGATG	3 cut(s)	234, 251, 563
BstKTI	GATC	4 cut(s)	88, 142, 476, 527
BstMBI	GATC	4 cut(s)	85, 139, 473, 524
BstNSI	RCATGY	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	834
BstV1I	GCAGC	1 cut(s)	131
BstX2I	RGATCY	3 cut(s)	85, 473, 524
BstYI	RGATCY	3 cut(s)	85, 473, 524
BtsCI	GGATG	3 cut(s)	234, 251, 563
BtsIMutI	CAGTG	1 cut(s)	689
Cac8I	GCNNGC	1 cut(s)	117
CaiI	CAGNNNCTG	1 cut(s)	737
Cfr10I	RCCGGY	1 cut(s)	115
Cfr13I	GGNCC	2 cut(s)	277, 401
CviAII	CATG	2 cut(s)	317, 537
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	4 cut(s)	87, 141, 475, 526
DpnII	GATC	4 cut(s)	85, 139, 473, 524
Eam1104I	CTCTTC	2 cut(s)	246, 768
EarI	CTCTTC	2 cut(s)	246, 768
EciI	GGCGGA	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	841
Eco47I	GGWCC	2 cut(s)	277, 401
Eco57I	CTGAAG	6 cut(s)	185, 283, 327, 453, 459, 465
EcoT14I	CCWWGG	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	841
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	2 cut(s)	320, 540
FaiI	YATR	9 cut(s)	135, 156, 158, 318, 356, 364, 498, 538, 587
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	2 cut(s)	316, 536
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	3 cut(s)	241, 258, 550
FriOI	GRGCYC	1 cut(s)	841
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	4 cut(s)	450, 659, 770, 788
GluI	GCNGC	1 cut(s)	120
HapII	CCGG	3 cut(s)	116, 226, 835
Hin1I	GRCGYC	1 cut(s)	783
Hin1II	CATG	2 cut(s)	320, 540
HinfI	GANTC	3 cut(s)	47, 70, 76
HpaII	CCGG	3 cut(s)	116, 226, 835
HphI	GGTGA	4 cut(s)	204, 323, 674, 791
Hpy166II	GTNNAC	2 cut(s)	258, 314
Hpy188I	TCNGA	4 cut(s)	75, 307, 524, 529
Hpy188III	TCNNGA	6 cut(s)	80, 163, 221, 593, 732, 770
Hpy8I	GTNNAC	2 cut(s)	258, 314
Hpy99I	CGWCG	1 cut(s)	222
HpyAV	CCTTC	5 cut(s)	97, 160, 302, 307, 617
HpyCH4III	ACNGT	2 cut(s)	679, 724
HpyCH4IV	ACGT	2 cut(s)	783, 811
HpyCH4V	TGCA	2 cut(s)	687, 819
HpyF3I	CTNAG	1 cut(s)	51
HpySE526I	ACGT	2 cut(s)	783, 811
Hsp92I	GRCGYC	1 cut(s)	783
Hsp92II	CATG	2 cut(s)	320, 540
KroI	GCCGGC	1 cut(s)	115
KroNI	GCCGGC	1 cut(s)	117
Kzo9I	GATC	4 cut(s)	85, 139, 473, 524
LmnI	GCTCC	2 cut(s)	12, 734
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	1 cut(s)	345
MaeI	CTAG	4 cut(s)	450, 659, 770, 788
MaeII	ACGT	2 cut(s)	783, 811
MaeIII	GTNAC	4 cut(s)	221, 635, 662, 779
MalI	GATC	4 cut(s)	87, 141, 475, 526
MboI	GATC	4 cut(s)	85, 139, 473, 524
MboII	GAAGA	4 cut(s)	112, 263, 723, 785
MfeI	CAATTG	1 cut(s)	175
MflI	RGATCY	3 cut(s)	85, 473, 524
MhlI	GDGCHC	1 cut(s)	841
MluCI	AATT	4 cut(s)	175, 200, 462, 596
MlyI	GAGTC	2 cut(s)	56, 85
MmeI	TCCRAC	3 cut(s)	585, 722, 774
MroNI	GCCGGC	1 cut(s)	115
MseI	TTAA	2 cut(s)	543, 569
MslI	CAYNNNNRTG	1 cut(s)	495
MspA1I	CMGCKG	2 cut(s)	122, 399
MspI	CCGG	3 cut(s)	116, 226, 835
MspR9I	CCNGG	1 cut(s)	836
MunI	CAATTG	1 cut(s)	175
Mva1269I	GAATGC	2 cut(s)	658, 720
NaeI	GCCGGC	1 cut(s)	117
NciI	CCSGG	1 cut(s)	836
NdeII	GATC	4 cut(s)	85, 139, 473, 524
NgoMIV	GCCGGC	1 cut(s)	115
NlaIII	CATG	2 cut(s)	320, 540
NlaIV	GGNNCC	2 cut(s)	14, 171
NmuCI	GTSAC	4 cut(s)	221, 635, 662, 779
NspI	RCATGY	1 cut(s)	320
PctI	GAATGC	2 cut(s)	658, 720
PdiI	GCCGGC	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	2 cut(s)	55, 84
PpsI	GAGTC	2 cut(s)	55, 84
PspN4I	GGNNCC	2 cut(s)	14, 171
PspPI	GGNCC	2 cut(s)	277, 401
PstNI	CAGNNNCTG	1 cut(s)	737
PsuI	RGATCY	3 cut(s)	85, 473, 524
PvuII	CAGCTG	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	495
SaqAI	TTAA	2 cut(s)	543, 569
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	4 cut(s)	85, 139, 473, 524
Sau96I	GGNCC	2 cut(s)	277, 401
SchI	GAGTC	2 cut(s)	56, 85
ScrFI	CCNGG	1 cut(s)	836
SduI	GDGCHC	1 cut(s)	841
SfaNI	GCATC	1 cut(s)	345
SinI	GGWCC	2 cut(s)	277, 401
SmiMI	CAYNNNNRTG	1 cut(s)	495
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
Sse9I	AATT	4 cut(s)	175, 200, 462, 596
SsiI	CCGC	2 cut(s)	113, 399
SspMI	CTAG	4 cut(s)	450, 659, 770, 788
StyD4I	CCNGG	1 cut(s)	834
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	2 cut(s)	679, 724
TaiI	ACGT	2 cut(s)	786, 814
TaqI	TCGA	1 cut(s)	827
TasI	AATT	4 cut(s)	175, 200, 462, 596
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	2 cut(s)	543, 569
Tru9I	TTAA	2 cut(s)	543, 569
TscAI	CASTG	1 cut(s)	689
TseFI	GTSAC	4 cut(s)	221, 635, 662, 779
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	4 cut(s)	221, 635, 662, 779
TspDTI	ATGAA	2 cut(s)	501, 574
TspGWI	ACGGA	1 cut(s)	258
TspRI	CASTG	1 cut(s)	689
VpaK11BI	GGWCC	2 cut(s)	277, 401
XapI	RAATTY	1 cut(s)	596
XbaI	TCTAGA	1 cut(s)	769
XceI	RCATGY	1 cut(s)	320
XspI	CTAG	4 cut(s)	450, 659, 770, 788
ZraI	GACGTC	1 cut(s)	784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.