Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Forward (+)

10166514 .. 10168451

Gene Structure 1938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0128700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTTGAGGCTGGTATCGAAGAGGCTGCTCCAAGGGTCCCGCGAGGCCCAGCTGCCGGCGGCCCTGACTCTGCCGCGTCTCTACCACGAGAGGGTGGTCGACCACTACGACAACCCCCGCAACGTCGGCTCCTTCGACAAAAACGACCCCTCCGTCGGCACCGGACTCGTCGGCGCACCCGCCTGCGGTGACGTCATGAAGCTCCAGATTAAGGTCGGCGAAGATGGCAAGATTACTGACGCCGTCTTCAAGACCTTTGGCTGTGGATCCGCCATCGCCTCCTCTTCCGTCGCTACTGAATGGGTGAAGGGGAAGCAAATGGAGGAGGTCCTGACTATTAAGAACACGGAAATTGCAAAACATCTCTCTCTTCCTCCAGTCAAGCTACACTGCAGCATGCTTGCTGAGGATGCCATCAAGGCAGCTGTTAAAGACTATCAAACAAAGCTGGCTAAATCATCAAATGGCAGCTCAGAGGCCTCACCTGTGGAGAAGGCTGCTAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

169

Amino Acids

18.06

Weight (kDa)

8.73

Isoelectric Point (pI)

40.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NifU_N	PF01592	28 - 150	7e-53	NifU-like N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	152
AatII	GACGTC	1 cut(s)	195
AccB1I	GGYRCC	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	2 cut(s)	42, 76
AciI	CCGC	7 cut(s)	40, 59, 74, 118, 180, 186, 270
AclWI	GGATC	2 cut(s)	261, 274
AcyI	GRCGYC	2 cut(s)	192, 240
AfiI	CCNNNNNNNGG	5 cut(s)	55, 91, 155, 185, 211
AgsI	TTSAA	1 cut(s)	250
AluBI	AGCT	6 cut(s)	52, 202, 385, 425, 448, 471
AluI	AGCT	6 cut(s)	52, 202, 385, 425, 448, 471
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	2 cut(s)	261, 274
AoxI	GGCC	3 cut(s)	45, 60, 477
ApeKI	GCWGC	6 cut(s)	25, 52, 393, 422, 468, 497
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	4 cut(s)	36, 46, 61, 328
AsuHPI	GGTGA	3 cut(s)	200, 316, 474
AvaII	GGWCC	2 cut(s)	36, 328
BamHI	GGATCC	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	158
BauI	CACGAG	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	238
BbvCI	CCTCAGC	1 cut(s)	405
BbvI	GCAGC	6 cut(s)	12, 39, 405, 434, 480, 484
BccI	CCATC	3 cut(s)	218, 281, 422
BceAI	ACGGC	1 cut(s)	227
BcgI	CGANNNNNNTGC	4 cut(s)	7, 41, 148, 182
BcoDI	GTCTC	1 cut(s)	83
BfmI	CTRYAG	1 cut(s)	391
BglI	GCCNNNNNGGC	1 cut(s)	419
BisI	GCNGC	8 cut(s)	26, 53, 60, 74, 394, 423, 469, 498
BlsI	GCNGC	8 cut(s)	27, 54, 61, 75, 395, 424, 470, 499
Bme18I	GGWCC	2 cut(s)	36, 328
BmgT120I	GGNCC	4 cut(s)	36, 46, 61, 328
BmiI	GGNNCC	5 cut(s)	37, 38, 130, 160, 268
BmsI	GCATC	1 cut(s)	400
BpiI	GAAGAC	1 cut(s)	238
BpmI	CTGGAG	2 cut(s)	188, 360
Bpu10I	CCTNAGC	1 cut(s)	405
BsaHI	GRCGYC	2 cut(s)	192, 240
BsaJI	CCNNGG	1 cut(s)	31
BsaWI	WCCGGW	1 cut(s)	161
BsaXI	ACNNNNNCTCC	4 cut(s)	113, 134, 143, 164
Bsc4I	CCNNNNNNNGG	5 cut(s)	55, 91, 155, 185, 211
Bse118I	RCCGGY	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	377
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	5 cut(s)	55, 91, 155, 185, 211
BseMII	CTCAG	2 cut(s)	396, 486
BseNI	ACTGG	1 cut(s)	377
BseRI	GAGGAG	2 cut(s)	271, 338
BseXI	GCAGC	6 cut(s)	12, 39, 405, 434, 480, 484
BseYI	CCCAGC	1 cut(s)	48
Bsh1236I	CGCG	2 cut(s)	42, 76
BshFI	GGCC	3 cut(s)	47, 62, 479
BshNI	GGYRCC	1 cut(s)	158
BsiSI	CCGG	2 cut(s)	56, 162
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	5 cut(s)	55, 91, 155, 185, 211
BsmAI	GTCTC	1 cut(s)	83
BsmBI	CGTCTC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	3 cut(s)	47, 62, 479
Bsp143I	GATC	1 cut(s)	266
BspACI	CCGC	7 cut(s)	40, 59, 74, 118, 180, 186, 270
BspANI	GGCC	3 cut(s)	47, 62, 479
BspCNI	CTCAG	2 cut(s)	397, 485
BspFNI	CGCG	2 cut(s)	42, 76
BspHI	TCATGA	1 cut(s)	195
BspLI	GGNNCC	5 cut(s)	37, 38, 130, 160, 268
BspMAI	CTGCAG	1 cut(s)	395
BspPI	GGATC	2 cut(s)	261, 274
BspT107I	GGYRCC	1 cut(s)	158
BsrFI	RCCGGY	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	377
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	1 cut(s)	266
BssNI	GRCGYC	2 cut(s)	192, 240
BssSI	CACGAG	1 cut(s)	86
BssT1I	CCWWGG	1 cut(s)	31
Bst2BI	CACGAG	1 cut(s)	86
Bst6I	CTCTTC	3 cut(s)	14, 289, 375
BstACI	GRCGYC	2 cut(s)	192, 240
BstC8I	GCNNGC	5 cut(s)	57, 184, 398, 402, 450
BstDEI	CTNAG	2 cut(s)	405, 472
BstF5I	GGATG	1 cut(s)	415
BstFNI	CGCG	2 cut(s)	42, 76
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	1 cut(s)	269
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	266
BstMWI	GCNNNNNNNGC	5 cut(s)	126, 225, 410, 419, 503
BstNSI	RCATGY	1 cut(s)	400
BstSFI	CTRYAG	1 cut(s)	391
BstUI	CGCG	2 cut(s)	42, 76
BstV1I	GCAGC	6 cut(s)	12, 39, 405, 434, 480, 484
BstV2I	GAAGAC	1 cut(s)	238
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BsuRI	GGCC	3 cut(s)	47, 62, 479
BtgZI	GCGATG	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	415
BtsI	GCAGTG	1 cut(s)	388
BtsIMutI	CAGTG	1 cut(s)	388
Cac8I	GCNNGC	5 cut(s)	57, 184, 398, 402, 450
CciI	TCATGA	1 cut(s)	195
CfoI	GCGC	1 cut(s)	176
Cfr10I	RCCGGY	1 cut(s)	55
Cfr13I	GGNCC	4 cut(s)	36, 46, 61, 328
CseI	GACGC	2 cut(s)	65, 248
CviAII	CATG	2 cut(s)	196, 397
DdeI	CTNAG	2 cut(s)	405, 472
DpnI	GATC	1 cut(s)	268
DpnII	GATC	1 cut(s)	266
DrdI	GACNNNNNNGTC	1 cut(s)	152
DseDI	GACNNNNNNGTC	1 cut(s)	152
Eam1104I	CTCTTC	3 cut(s)	14, 289, 375
EarI	CTCTTC	3 cut(s)	14, 289, 375
EciI	GGCGGA	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	31
Eco147I	AGGCCT	1 cut(s)	479
Eco47I	GGWCC	2 cut(s)	36, 328
EcoO109I	RGGNCCY	2 cut(s)	36, 328
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	2 cut(s)	199, 400
FaiI	YATR	2 cut(s)	197, 398
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	2 cut(s)	195, 396
FauI	CCCGC	3 cut(s)	47, 125, 187
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	8 cut(s)	26, 53, 60, 74, 394, 423, 469, 498
FokI	GGATG	1 cut(s)	422
Fsp4HI	GCNGC	8 cut(s)	26, 53, 60, 74, 394, 423, 469, 498
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	8 cut(s)	26, 53, 60, 74, 394, 423, 469, 498
GsaI	CCCAGC	1 cut(s)	52
GsuI	CTGGAG	2 cut(s)	188, 360
HaeIII	GGCC	3 cut(s)	47, 62, 479
HapII	CCGG	2 cut(s)	56, 162
HgaI	GACGC	2 cut(s)	65, 248
HhaI	GCGC	1 cut(s)	176
Hin1I	GRCGYC	2 cut(s)	192, 240
Hin1II	CATG	2 cut(s)	199, 400
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	2 cut(s)	67, 165
HpaII	CCGG	2 cut(s)	56, 162
HphI	GGTGA	3 cut(s)	200, 316, 474
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	475
Hpy188III	TCNNGA	4 cut(s)	196, 205, 250, 331
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	4 cut(s)	128, 158, 173, 293
HpyAV	CCTTC	3 cut(s)	142, 301, 487
HpyCH4IV	ACGT	2 cut(s)	123, 192
HpyCH4V	TGCA	2 cut(s)	356, 393
HpyF10VI	GCNNNNNNNGC	5 cut(s)	126, 225, 410, 419, 503
HpyF3I	CTNAG	2 cut(s)	405, 472
HpySE526I	ACGT	2 cut(s)	123, 192
Hsp92I	GRCGYC	2 cut(s)	192, 240
Hsp92II	CATG	2 cut(s)	199, 400
HspAI	GCGC	1 cut(s)	174
KflI	GGGWCCC	1 cut(s)	36
KroI	GCCGGC	1 cut(s)	55
KroNI	GCCGGC	1 cut(s)	57
Kzo9I	GATC	1 cut(s)	266
LmnI	GCTCC	3 cut(s)	33, 134, 207
Lsp1109I	GCAGC	6 cut(s)	12, 39, 405, 434, 480, 484
LweI	GCATC	1 cut(s)	400
MaeII	ACGT	2 cut(s)	123, 192
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	1 cut(s)	268
MboI	GATC	1 cut(s)	266
MboII	GAAGA	5 cut(s)	31, 233, 238, 276, 362
MflI	RGATCY	1 cut(s)	266
MluCI	AATT	1 cut(s)	351
MlyI	GAGTC	2 cut(s)	61, 159
MroNI	GCCGGC	1 cut(s)	55
MseI	TTAA	3 cut(s)	210, 339, 429
MspA1I	CMGCKG	2 cut(s)	52, 425
MspI	CCGG	2 cut(s)	56, 162
MvnI	CGCG	2 cut(s)	42, 76
MwoI	GCNNNNNNNGC	5 cut(s)	126, 225, 410, 419, 503
NaeI	GCCGGC	1 cut(s)	57
NdeII	GATC	1 cut(s)	266
NgoMIV	GCCGGC	1 cut(s)	55
NlaIII	CATG	2 cut(s)	199, 400
NlaIV	GGNNCC	5 cut(s)	37, 38, 130, 160, 268
NmuCI	GTSAC	1 cut(s)	188
NspI	RCATGY	1 cut(s)	400
PaeI	GCATGC	1 cut(s)	400
PagI	TCATGA	1 cut(s)	195
PceI	AGGCCT	1 cut(s)	479
PcsI	WCGNNNNNNNCGW	4 cut(s)	105, 132, 141, 150
PdiI	GCCGGC	1 cut(s)	57
PflFI	GACNNNGTC	1 cut(s)	242
PkrI	GCNGC	8 cut(s)	27, 54, 61, 75, 395, 424, 470, 499
PleI	GAGTC	2 cut(s)	61, 159
PpsI	GAGTC	2 cut(s)	61, 159
PpuMI	RGGWCCY	2 cut(s)	36, 328
Psp5II	RGGWCCY	2 cut(s)	36, 328
PspFI	CCCAGC	1 cut(s)	48
PspN4I	GGNNCC	5 cut(s)	37, 38, 130, 160, 268
PspPI	GGNCC	4 cut(s)	36, 46, 61, 328
PspPPI	RGGWCCY	2 cut(s)	36, 328
PstI	CTGCAG	1 cut(s)	395
PsuI	RGATCY	1 cut(s)	266
PsyI	GACNNNGTC	1 cut(s)	242
PvuII	CAGCTG	2 cut(s)	52, 425
SalI	GTCGAC	1 cut(s)	98
SaqAI	TTAA	3 cut(s)	210, 339, 429
SatI	GCNGC	8 cut(s)	26, 53, 60, 74, 394, 423, 469, 498
Sau3AI	GATC	1 cut(s)	266
Sau96I	GGNCC	4 cut(s)	36, 46, 61, 328
SchI	GAGTC	2 cut(s)	61, 159
SfaNI	GCATC	1 cut(s)	400
SfcI	CTRYAG	1 cut(s)	391
SinI	GGWCC	2 cut(s)	36, 328
SphI	GCATGC	1 cut(s)	400
Sse9I	AATT	1 cut(s)	351
SseBI	AGGCCT	1 cut(s)	479
SsiI	CCGC	7 cut(s)	40, 59, 74, 118, 180, 186, 270
StuI	AGGCCT	1 cut(s)	479
StyI	CCWWGG	1 cut(s)	31
TaiI	ACGT	2 cut(s)	126, 195
TaqI	TCGA	3 cut(s)	17, 99, 135
TasI	AATT	1 cut(s)	351
TauI	GCSGC	2 cut(s)	62, 76
Tru1I	TTAA	3 cut(s)	210, 339, 429
Tru9I	TTAA	3 cut(s)	210, 339, 429
TscAI	CASTG	1 cut(s)	395
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	6 cut(s)	25, 52, 393, 422, 468, 497
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	212
TspGWI	ACGGA	3 cut(s)	142, 277, 362
TspRI	CASTG	1 cut(s)	395
Tth111I	GACNNNGTC	1 cut(s)	242
VpaK11BI	GGWCC	2 cut(s)	36, 328
XceI	RCATGY	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	99
ZraI	GACGTC	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.