Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Forward (+)

23310845 .. 23316968

Gene Structure 6124 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g32412.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCTTCATCTTCCAGCTCCCTTGCTGAGAAAGAAAAAGGACATGGCGTTTCTGAAGAAGACTCTCCAGCCTTCTGCTTGAGGATTTTCAGCCGTGAAGATCTCAAAGATGGGAAGAAGGAACTTCCGCCAGCAGCTGTGAGGGAGTATGGACATCAAATGGCAGACCATATGTTTCTCAAGGTTCCAAATTGTGGAGAACATTGGAAAATAGAATTGAGAACGTCACCTCGTCGTGATCGAATGTGGTTGGAGAAGGGATGGGAAGAGTTTGCCAGCTTTTACTTACTGGACCAAGGCGACATGGCAACCTTCAGCTTTGAAGGCGAACATTCCCATTTCCATGTAAGCATCTATAGTTGGGATGATATGGAAATAGAATACCCTATTCGCAGTGGAGGAGCTGGTGTCAGTACACCAGAAAGAAAAGAAATAGGAACTGAAGCTGTAGCTATAGCCAGTTCACTTTCCCACAGATCCTCTGTTGCTGTACGTGGAAAAGATAAGGTCAGAAGACGAAGAAGGAGACAAACAGGATTTGAAGCTGAAGCTAGAGCCATTTCAGTTTCCTCCAGATGCTCTGCTGATGAACATGAATATGATACTTCCCAAATGAGCAGTTTCAGGTCGGACAAGCCATTTCTTGATATCAGAATTCCAGCCAAAACCTTGTCCTTTCGTGTGTTTATAAATCAAGCATTTGCCGCGGAACATTTCTATAAAGCAGACACTTGTTGTGATGTGACGCTACAGAATATTCAAGGTGACAAAGTTTGGACGATTCAATGTTGTTCGTACAAAAGAAGTAATGGAAGAATGCAAGCAATAATTTCAGGTGCTGGTTGGAAAGCATTTAGGCAGGACAATCATCTGGAAGAAGGTGACATATGTGTGCTGGAGGTGATAGAGGAACGTAAGTGCAGAGTTTCGATATTCCGAGCTAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

317

Amino Acids

36.08

Weight (kDa)

7.16

Isoelectric Point (pI)

56.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	34 - 119	2e-10	B3 DNA binding domain
B3	PF02362	225 - 314	9.5e-14	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	689
AccB7I	CCANNNNNTGG	1 cut(s)	194
AccII	CGCG	1 cut(s)	707
AciI	CCGC	3 cut(s)	128, 705, 707
AclWI	GGATC	1 cut(s)	471
AcsI	RAATTY	1 cut(s)	654
AcuI	CTGAAG	4 cut(s)	75, 298, 462, 567
AfaI	GTAC	3 cut(s)	415, 492, 797
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	4 cut(s)	323, 542, 761, 785
Alw26I	GTCTC	1 cut(s)	520
AlwI	GGATC	1 cut(s)	471
AlwNI	CAGNNNCTG	2 cut(s)	137, 839
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	1 cut(s)	654
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	4 cut(s)	219, 776, 893, 913
AvaII	GGWCC	1 cut(s)	292
BbsI	GAAGAC	2 cut(s)	66, 520
BbvI	GCAGC	1 cut(s)	146
BccI	CCATC	2 cut(s)	104, 255
BceAI	ACGGC	1 cut(s)	78
BcoDI	GTCTC	1 cut(s)	520
BfaI	CTAG	1 cut(s)	552
BfmI	CTRYAG	4 cut(s)	355, 447, 453, 749
BglII	AGATCT	1 cut(s)	100
BisI	GCNGC	2 cut(s)	135, 705
BlsI	GCNGC	2 cut(s)	136, 706
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	186
BmsI	GCATC	2 cut(s)	360, 566
BpiI	GAAGAC	2 cut(s)	66, 520
BpmI	CTGGAG	3 cut(s)	51, 556, 917
BpuEI	CTTGAG	2 cut(s)	100, 164
BsaAI	YACGTR	1 cut(s)	494
BsaJI	CCNNGG	2 cut(s)	295, 705
BsaXI	ACNNNNNCTCC	2 cut(s)	393, 423
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	2 cut(s)	294, 459
BseDI	CCNNGG	2 cut(s)	295, 705
BseGI	GGATG	2 cut(s)	266, 370
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMII	CTCAG	1 cut(s)	18
BseNI	ACTGG	2 cut(s)	294, 459
BseRI	GAGGAG	1 cut(s)	414
BseXI	GCAGC	1 cut(s)	146
BsgI	GTGCAG	1 cut(s)	940
Bsh1236I	CGCG	1 cut(s)	707
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	520
BsmI	GAATGC	1 cut(s)	822
Bsp143I	GATC	3 cut(s)	100, 238, 476
BspACI	CCGC	3 cut(s)	128, 705, 707
BspCNI	CTCAG	1 cut(s)	19
BspFNI	CGCG	1 cut(s)	707
BspLI	GGNNCC	1 cut(s)	186
BspPI	GGATC	1 cut(s)	471
BsrI	ACTGG	2 cut(s)	294, 459
BssECI	CCNNGG	2 cut(s)	295, 705
BssMI	GATC	3 cut(s)	100, 238, 476
BssT1I	CCWWGG	1 cut(s)	295
Bst6I	CTCTTC	1 cut(s)	261
BstBAI	YACGTR	1 cut(s)	494
BstC8I	GCNNGC	3 cut(s)	132, 277, 822
BstDEI	CTNAG	1 cut(s)	27
BstDSI	CCRYGG	1 cut(s)	705
BstF5I	GGATG	2 cut(s)	266, 370
BstFNI	CGCG	1 cut(s)	707
BstKTI	GATC	3 cut(s)	103, 241, 479
BstMAI	GTCTC	1 cut(s)	520
BstMBI	GATC	3 cut(s)	100, 238, 476
BstMWI	GCNNNNNNNGC	2 cut(s)	324, 704
BstSFI	CTRYAG	4 cut(s)	355, 447, 453, 749
BstUI	CGCG	1 cut(s)	707
BstV1I	GCAGC	1 cut(s)	146
BstV2I	GAAGAC	2 cut(s)	66, 520
BstX2I	RGATCY	2 cut(s)	100, 476
BstYI	RGATCY	2 cut(s)	100, 476
BtgI	CCRYGG	1 cut(s)	705
BtsCI	GGATG	2 cut(s)	266, 370
BtsI	GCAGTG	1 cut(s)	400
BtsIMutI	CAGTG	1 cut(s)	400
Cac8I	GCNNGC	3 cut(s)	132, 277, 822
CaiI	CAGNNNCTG	2 cut(s)	137, 839
Cfr13I	GGNCC	1 cut(s)	292
Cfr42I	CCGCGG	1 cut(s)	708
CseI	GACGC	1 cut(s)	754
Csp6I	GTAC	3 cut(s)	414, 491, 796
CviAII	CATG	4 cut(s)	44, 304, 344, 593
CviQI	GTAC	3 cut(s)	414, 491, 796
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	3 cut(s)	102, 240, 478
DpnII	GATC	3 cut(s)	100, 238, 476
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
EciI	GGCGGA	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	295
Eco32I	GATATC	1 cut(s)	649
Eco47I	GGWCC	1 cut(s)	292
Eco57I	CTGAAG	4 cut(s)	75, 298, 462, 567
EcoRI	GAATTC	1 cut(s)	654
EcoRV	GATATC	1 cut(s)	649
EcoT14I	CCWWGG	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	4 cut(s)	47, 307, 347, 596
FatI	CATG	4 cut(s)	43, 303, 343, 592
FauNDI	CATATG	2 cut(s)	171, 887
Fnu4HI	GCNGC	2 cut(s)	135, 705
FokI	GGATG	2 cut(s)	273, 377
Fsp4HI	GCNGC	2 cut(s)	135, 705
FspBI	CTAG	1 cut(s)	552
GluI	GCNGC	2 cut(s)	135, 705
GsuI	CTGGAG	3 cut(s)	51, 556, 917
HgaI	GACGC	1 cut(s)	754
Hin1II	CATG	4 cut(s)	47, 307, 347, 596
HinfI	GANTC	2 cut(s)	62, 781
HphI	GGTGA	4 cut(s)	219, 776, 893, 913
Hpy166II	GTNNAC	2 cut(s)	416, 464
Hpy188I	TCNGA	5 cut(s)	55, 512, 631, 653, 938
Hpy188III	TCNNGA	4 cut(s)	236, 573, 644, 872
Hpy8I	GTNNAC	2 cut(s)	416, 464
Hpy99I	CGWCG	1 cut(s)	237
HpyAV	CCTTC	7 cut(s)	82, 112, 250, 317, 322, 516, 872
HpyCH4IV	ACGT	3 cut(s)	224, 493, 913
HpyCH4V	TGCA	2 cut(s)	820, 921
HpyF10VI	GCNNNNNNNGC	2 cut(s)	324, 704
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	3 cut(s)	224, 493, 913
Hsp92II	CATG	4 cut(s)	47, 307, 347, 596
KspI	CCGCGG	1 cut(s)	708
Kzo9I	GATC	3 cut(s)	100, 238, 476
LmnI	GCTCC	2 cut(s)	23, 401
Lsp1109I	GCAGC	1 cut(s)	146
LweI	GCATC	2 cut(s)	360, 566
MaeI	CTAG	1 cut(s)	552
MaeII	ACGT	3 cut(s)	224, 493, 913
MaeIII	GTNAC	4 cut(s)	225, 742, 764, 881
MalI	GATC	3 cut(s)	102, 240, 478
MboI	GATC	3 cut(s)	100, 238, 476
MflI	RGATCY	2 cut(s)	100, 476
MluCI	AATT	4 cut(s)	190, 215, 654, 828
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	3 cut(s)	231, 609, 824
MnlI	CCTC	8 cut(s)	75, 135, 240, 392, 490, 580, 892, 901
MslI	CAYNNNNRTG	3 cut(s)	342, 597, 890
MspA1I	CMGCKG	2 cut(s)	137, 707
Mva1269I	GAATGC	1 cut(s)	822
MvnI	CGCG	1 cut(s)	707
MwoI	GCNNNNNNNGC	2 cut(s)	324, 704
NdeI	CATATG	2 cut(s)	171, 887
NdeII	GATC	3 cut(s)	100, 238, 476
NlaIII	CATG	4 cut(s)	47, 307, 347, 596
NlaIV	GGNNCC	1 cut(s)	186
NmuCI	GTSAC	4 cut(s)	225, 742, 764, 881
PcsI	WCGNNNNNNNCGW	1 cut(s)	238
PctI	GAATGC	1 cut(s)	822
PfeI	GAWTC	1 cut(s)	781
PflMI	CCANNNNNTGG	1 cut(s)	194
PkrI	GCNGC	2 cut(s)	136, 706
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
Ppu21I	YACGTR	1 cut(s)	494
PsiI	TTATAA	1 cut(s)	689
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	1 cut(s)	292
PstNI	CAGNNNCTG	2 cut(s)	137, 839
PsuI	RGATCY	2 cut(s)	100, 476
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	3 cut(s)	415, 492, 797
RsaNI	GTAC	3 cut(s)	414, 491, 796
RseI	CAYNNNNRTG	3 cut(s)	342, 597, 890
SacII	CCGCGG	1 cut(s)	708
SatI	GCNGC	2 cut(s)	135, 705
Sau3AI	GATC	3 cut(s)	100, 238, 476
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	1 cut(s)	56
SfaNI	GCATC	2 cut(s)	360, 566
SfcI	CTRYAG	4 cut(s)	355, 447, 453, 749
Sfr303I	CCGCGG	1 cut(s)	708
SgrBI	CCGCGG	1 cut(s)	708
SinI	GGWCC	1 cut(s)	292
SmiMI	CAYNNNNRTG	3 cut(s)	342, 597, 890
SmlI	CTYRAG	2 cut(s)	79, 179
SmoI	CTYRAG	2 cut(s)	79, 179
Sse9I	AATT	4 cut(s)	190, 215, 654, 828
SsiI	CCGC	3 cut(s)	128, 705, 707
SspI	AATATT	1 cut(s)	757
SspMI	CTAG	1 cut(s)	552
StyI	CCWWGG	1 cut(s)	295
TaiI	ACGT	3 cut(s)	227, 496, 916
TaqI	TCGA	2 cut(s)	241, 929
TasI	AATT	4 cut(s)	190, 215, 654, 828
TatI	WGTACW	1 cut(s)	413
TauI	GCSGC	1 cut(s)	707
TfiI	GAWTC	1 cut(s)	781
TscAI	CASTG	1 cut(s)	400
TseFI	GTSAC	4 cut(s)	225, 742, 764, 881
TseI	GCWGC	1 cut(s)	134
Tsp45I	GTSAC	4 cut(s)	225, 742, 764, 881
TspDTI	ATGAA	2 cut(s)	603, 609
TspRI	CASTG	1 cut(s)	400
Van91I	CCANNNNNTGG	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	292
XapI	RAATTY	1 cut(s)	654
XspI	CTAG	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.