Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Forward (+)

26241802 .. 26244058

Gene Structure 2257 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G022290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCCACAATGTCACGCCCAATGGCTTCTCGGAGCAACAGAGAGGGAAGAGGACATGCCTTCCCAGTGGACTCTCCAAGCTTCTGCTTGAAGATTGTTACTGCTGTGGATCTCCAAGATGGGAAGGAACTTCCAGAGCCAGCTGTGACGAAGTATGGGAATAATTGTATGGCAGACTCCATATTCCTCAAGGTTCCCAATTGCGGAACATCATGGCCAGTAGAACTGAAAAAAACGATTCGTGGTAGCCGAATCTGGTTACAAAAAGGATGGGAACGATTCACGGACTTTTACTCCATAGACCAAGATTACTTCATAGTGTTCAGCTATGAAGGTGAACATTCTTATTTCCAAGTACACATTTTCAACTGCAGCAATATGGAAATAGGTTACCCAATTTGTGGAGGAGCTGGTGGATGCATGTCTACACCCAATTCAAAAGGTACCTCCTTTCCCTCTGCATCATCTGCTGGCAGAGACCAAAACAATGACAACCAACGTGACTTTTATGGAGCTAACAATTTCAAATTCGGGGACAAGCCTAGTTTTCGGGTCACAATGACTGAAAAATACTTATCATCTCTCTTGAGAGTACCTTCGGATTTCACCATCGAACATTTGTGTGAAATAGGGTCTCATTCTACTGTGACCTTACAGACTTCAGGTGAGAGAACATGGACTGTTCAGTGTGCTGTCAGCAAATGTGGGAAAAATGCAAGATTCAATCGTGCTAGTTGGAGAGGATTTGTGAAGGGCAATCAATTGGAAGCAGGTGATGATTGTCTGTTTGAGTTGATAGGCGAACGTATGCTCAAAGTCAACATATCCCGATCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

279

Amino Acids

31.23

Weight (kDa)

8.48

Isoelectric Point (pI)

38.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	41 - 123	6.4e-09	B3 DNA binding domain
B3	PF02362	185 - 277	4.3e-13	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	761
Acc36I	ACCTGC	1 cut(s)	761
Acc65I	GGTACC	1 cut(s)	443
AccB1I	GGYRCC	1 cut(s)	443
AccB7I	CCANNNNNTGG	1 cut(s)	401
AccI	GTMKAC	1 cut(s)	425
AciI	CCGC	1 cut(s)	204
AclWI	GGATC	1 cut(s)	117
AcoI	YGGCCR	2 cut(s)	3, 215
AcsI	RAATTY	1 cut(s)	527
AcuI	CTGAAG	1 cut(s)	645
AfaI	GTAC	3 cut(s)	357, 445, 594
AfiI	CCNNNNNNNGG	2 cut(s)	203, 401
AgsI	TTSAA	5 cut(s)	91, 367, 438, 526, 724
AluBI	AGCT	5 cut(s)	81, 143, 327, 410, 515
AluI	AGCT	5 cut(s)	81, 143, 327, 410, 515
Alw26I	GTCTC	2 cut(s)	471, 639
AlwI	GGATC	1 cut(s)	117
AoxI	GGCC	2 cut(s)	3, 215
ApeKI	GCWGC	1 cut(s)	372
ApoI	RAATTY	1 cut(s)	527
Asp718I	GGTACC	1 cut(s)	443
AsuHPI	GGTGA	4 cut(s)	347, 598, 677, 785
BalI	TGGCCA	2 cut(s)	5, 217
BanI	GGYRCC	1 cut(s)	443
BbvI	GCAGC	1 cut(s)	384
BccI	CCATC	3 cut(s)	113, 264, 617
BcoDI	GTCTC	2 cut(s)	471, 639
BfaI	CTAG	2 cut(s)	543, 732
BfmI	CTRYAG	1 cut(s)	370
BfuAI	ACCTGC	1 cut(s)	761
BisI	GCNGC	1 cut(s)	373
BlsI	GCNGC	1 cut(s)	374
BmiI	GGNNCC	2 cut(s)	195, 445
BmrI	ACTGGG	1 cut(s)	59
BmsI	GCATC	2 cut(s)	407, 470
BmuI	ACTGGG	1 cut(s)	59
BpuEI	CTTGAG	2 cut(s)	173, 607
BsaI	GGTCTC	2 cut(s)	471, 639
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	2 cut(s)	203, 401
Bse1I	ACTGG	2 cut(s)	65, 218
BseGI	GGATG	2 cut(s)	275, 422
BseLI	CCNNNNNNNGG	2 cut(s)	203, 401
BseNI	ACTGG	2 cut(s)	65, 218
BseRI	GAGGAG	1 cut(s)	420
BseXI	GCAGC	1 cut(s)	384
BshFI	GGCC	2 cut(s)	5, 217
BshNI	GGYRCC	1 cut(s)	443
BslFI	GGGAC	1 cut(s)	548
BslI	CCNNNNNNNGG	2 cut(s)	203, 401
BsmAI	GTCTC	2 cut(s)	471, 639
BsmFI	GGGAC	1 cut(s)	548
BsnI	GGCC	2 cut(s)	5, 217
Bso31I	GGTCTC	2 cut(s)	471, 639
Bsp143I	GATC	2 cut(s)	109, 830
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	2 cut(s)	5, 217
BspLI	GGNNCC	2 cut(s)	195, 445
BspMAI	CTGCAG	1 cut(s)	374
BspMI	ACCTGC	1 cut(s)	761
BspPI	GGATC	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	443
BspTNI	GGTCTC	2 cut(s)	471, 639
BsrI	ACTGG	2 cut(s)	65, 218
BssMI	GATC	2 cut(s)	109, 830
Bst4CI	ACNGT	2 cut(s)	646, 682
Bst6I	CTCTTC	1 cut(s)	43
BstAPI	GCANNNNNTGC	1 cut(s)	467
BstC8I	GCNNGC	2 cut(s)	141, 472
BstEII	GGTNACC	1 cut(s)	389
BstF5I	GGATG	2 cut(s)	275, 422
BstKTI	GATC	2 cut(s)	112, 833
BstMAI	GTCTC	2 cut(s)	471, 639
BstMBI	GATC	2 cut(s)	109, 830
BstMWI	GCNNNNNNNGC	1 cut(s)	467
BstNSI	RCATGY	2 cut(s)	59, 424
BstPI	GGTNACC	1 cut(s)	389
BstSFI	CTRYAG	1 cut(s)	370
BstV1I	GCAGC	1 cut(s)	384
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	5, 217
BtsCI	GGATG	2 cut(s)	275, 422
BtsIMutI	CAGTG	2 cut(s)	72, 692
BveI	ACCTGC	1 cut(s)	761
Cac8I	GCNNGC	2 cut(s)	141, 472
Csp6I	GTAC	3 cut(s)	356, 444, 593
CviAII	CATG	4 cut(s)	56, 213, 421, 675
CviQI	GTAC	3 cut(s)	356, 444, 593
DpnI	GATC	2 cut(s)	111, 832
DpnII	GATC	2 cut(s)	109, 830
EaeI	YGGCCR	2 cut(s)	3, 215
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Eco31I	GGTCTC	2 cut(s)	471, 639
Eco57I	CTGAAG	1 cut(s)	645
Eco91I	GGTNACC	1 cut(s)	389
EcoO65I	GGTNACC	1 cut(s)	389
EcoT22I	ATGCAT	1 cut(s)	422
FaeI	CATG	4 cut(s)	59, 216, 424, 678
FaqI	GGGAC	1 cut(s)	548
FatI	CATG	4 cut(s)	55, 212, 420, 674
FblI	GTMKAC	1 cut(s)	425
Fnu4HI	GCNGC	1 cut(s)	373
FokI	GGATG	2 cut(s)	282, 429
Fsp4HI	GCNGC	1 cut(s)	373
FspBI	CTAG	2 cut(s)	543, 732
GluI	GCNGC	1 cut(s)	373
HaeIII	GGCC	2 cut(s)	5, 217
Hin1II	CATG	4 cut(s)	59, 216, 424, 678
HincII	GTYRAC	1 cut(s)	820
HindII	GTYRAC	1 cut(s)	820
HindIII	AAGCTT	1 cut(s)	79
HinfI	GANTC	6 cut(s)	71, 176, 238, 252, 279, 720
HphI	GGTGA	4 cut(s)	347, 598, 677, 785
Hpy166II	GTNNAC	5 cut(s)	70, 338, 358, 426, 820
Hpy188I	TCNGA	2 cut(s)	33, 601
Hpy188III	TCNNGA	3 cut(s)	134, 586, 828
Hpy8I	GTNNAC	5 cut(s)	70, 338, 358, 426, 820
HpyAV	CCTTC	5 cut(s)	70, 118, 326, 606, 745
HpyCH4III	ACNGT	2 cut(s)	646, 682
HpyCH4IV	ACGT	2 cut(s)	499, 805
HpyCH4V	TGCA	4 cut(s)	372, 420, 461, 716
HpyF10VI	GCNNNNNNNGC	1 cut(s)	467
HpySE526I	ACGT	2 cut(s)	499, 805
Hsp92II	CATG	4 cut(s)	59, 216, 424, 678
KpnI	GGTACC	1 cut(s)	447
Kzo9I	GATC	2 cut(s)	109, 830
LmnI	GCTCC	3 cut(s)	33, 407, 512
LpnPI	CCDG	9 cut(s)	78, 147, 153, 231, 241, 396, 456, 648, 756
Lsp1109I	GCAGC	1 cut(s)	384
LweI	GCATC	2 cut(s)	407, 470
MaeI	CTAG	2 cut(s)	543, 732
MaeII	ACGT	2 cut(s)	499, 805
MaeIII	GTNAC	8 cut(s)	12, 97, 145, 258, 389, 500, 553, 646
MalI	GATC	2 cut(s)	111, 832
MboI	GATC	2 cut(s)	109, 830
MboII	GAAGA	2 cut(s)	60, 103
MfeI	CAATTG	2 cut(s)	199, 761
MflI	RGATCY	1 cut(s)	109
MlsI	TGGCCA	2 cut(s)	5, 217
MluCI	AATT	7 cut(s)	163, 199, 396, 433, 520, 527, 761
MluNI	TGGCCA	2 cut(s)	5, 217
MlyI	GAGTC	2 cut(s)	65, 170
MmeI	TCCRAC	1 cut(s)	716
MnlI	CCTC	7 cut(s)	37, 44, 197, 398, 457, 466, 734
Mox20I	TGGCCA	2 cut(s)	5, 217
Mph1103I	ATGCAT	1 cut(s)	422
MscI	TGGCCA	2 cut(s)	5, 217
MslI	CAYNNNNRTG	1 cut(s)	621
Msp20I	TGGCCA	2 cut(s)	5, 217
MspA1I	CMGCKG	1 cut(s)	143
MunI	CAATTG	2 cut(s)	199, 761
MwoI	GCNNNNNNNGC	1 cut(s)	467
NdeII	GATC	2 cut(s)	109, 830
NlaIII	CATG	4 cut(s)	59, 216, 424, 678
NlaIV	GGNNCC	2 cut(s)	195, 445
NmuCI	GTSAC	5 cut(s)	12, 145, 500, 553, 646
NsiI	ATGCAT	1 cut(s)	422
NspI	RCATGY	2 cut(s)	59, 424
PaqCI	CACCTGC	1 cut(s)	761
PcsI	WCGNNNNNNNCGW	1 cut(s)	247
PfeI	GAWTC	4 cut(s)	238, 252, 279, 720
PflMI	CCANNNNNTGG	1 cut(s)	401
PkrI	GCNGC	1 cut(s)	374
PleI	GAGTC	2 cut(s)	65, 170
PpsI	GAGTC	2 cut(s)	65, 170
PspEI	GGTNACC	1 cut(s)	389
PspN4I	GGNNCC	2 cut(s)	195, 445
PstI	CTGCAG	1 cut(s)	374
PsuI	RGATCY	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	3 cut(s)	357, 445, 594
RsaNI	GTAC	3 cut(s)	356, 444, 593
RseI	CAYNNNNRTG	1 cut(s)	621
SatI	GCNGC	1 cut(s)	373
Sau3AI	GATC	2 cut(s)	109, 830
SchI	GAGTC	2 cut(s)	65, 170
SfaNI	GCATC	2 cut(s)	407, 470
SfcI	CTRYAG	1 cut(s)	370
SmiMI	CAYNNNNRTG	1 cut(s)	621
SmlI	CTYRAG	2 cut(s)	188, 586
SmoI	CTYRAG	2 cut(s)	188, 586
Sse9I	AATT	7 cut(s)	163, 199, 396, 433, 520, 527, 761
SsiI	CCGC	1 cut(s)	204
SspMI	CTAG	2 cut(s)	543, 732
TaaI	ACNGT	2 cut(s)	646, 682
TaiI	ACGT	2 cut(s)	502, 808
TaqI	TCGA	1 cut(s)	612
TasI	AATT	7 cut(s)	163, 199, 396, 433, 520, 527, 761
TatI	WGTACW	1 cut(s)	355
TfiI	GAWTC	4 cut(s)	238, 252, 279, 720
TscAI	CASTG	2 cut(s)	72, 692
TseFI	GTSAC	5 cut(s)	12, 145, 500, 553, 646
TseI	GCWGC	1 cut(s)	372
Tsp45I	GTSAC	5 cut(s)	12, 145, 500, 553, 646
TspDTI	ATGAA	2 cut(s)	304, 345
TspGWI	ACGGA	1 cut(s)	299
TspRI	CASTG	2 cut(s)	72, 692
Van91I	CCANNNNNTGG	1 cut(s)	401
XapI	RAATTY	1 cut(s)	527
XceI	RCATGY	2 cut(s)	59, 424
XmiI	GTMKAC	1 cut(s)	425
XspI	CTAG	2 cut(s)	543, 732
Zsp2I	ATGCAT	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.