FvH4_5g07160

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000392
Physical Location & Seq
Reverse (-)
4199127 .. 4200024
898 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g07160.t1

Sequence Viewer

Length: 414 bp
ATGTCCAAAGGGTGCAATTCATCTACTGAAGCTTATATTGTGAGCCATAACTTGATCCTATCTCATGCTACTGCTGTTAAGCTCTATAGGGAGAAGTTTCAGCTAAACAAGGTGGACAAATTGGATGGTGTCTTGAAGTATACGTACGGAGATTATCCGAAGGTTATGAGACATTTGGTCAAGGAAAGGCTACCCTGTTTCACCGAAGAAGAGAAAAGCTTAGTCAAGGGTTCCTTCGATTTCATTGGTATCAACTATTATACCACAAGATATGGTAAAAACGATCCAGCGAGTCAAGCTAACGACGATTTAGCTACATCAAGTGAAACAAATGCAAATGGAGTCTTAATCGGTCCTCCTGCTGAAGGAAGCGTCTACATCTTCTCATATCCACAAGGTCTTCAAAAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

138

Amino Acids

15.31

Weight (kDa)

7.73

Isoelectric Point (pI)

27.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 48 - 136 2.2e-12 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 140, 375
AclWI GGATC 2 cut(s) 49, 278
AcuI CTGAAG 2 cut(s) 48, 384
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 365
AgsI TTSAA 2 cut(s) 136, 404
AhdI GACNNNNNGTC 1 cut(s) 176
AluBI AGCT 7 cut(s) 32, 82, 103, 219, 299, 314, 409
AluI AGCT 7 cut(s) 32, 82, 103, 219, 299, 314, 409
Alw26I GTCTC 1 cut(s) 163
AlwI GGATC 2 cut(s) 49, 278
AspS9I GGNCC 1 cut(s) 353
AsuHPI GGTGA 1 cut(s) 193
AvaII GGWCC 1 cut(s) 353
BarI GAAGNNNNNNTAC 2 cut(s) 128, 160
BbsI GAAGAC 1 cut(s) 392
BccI CCATC 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 163
BfmI CTRYAG 1 cut(s) 85
Bme18I GGWCC 1 cut(s) 353
BmeRI GACNNNNNGTC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 353
BmiI GGNNCC 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 392
BsaAI YACGTR 1 cut(s) 144
Bsc4I CCNNNNNNNGG 1 cut(s) 365
BseGI GGATG 1 cut(s) 130
BseLI CCNNNNNNNGG 1 cut(s) 365
BsiWI CGTACG 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 365
BsmAI GTCTC 1 cut(s) 163
Bsp143I GATC 2 cut(s) 54, 283
BspLI GGNNCC 1 cut(s) 232
BspPI GGATC 2 cut(s) 49, 278
BssMI GATC 2 cut(s) 54, 283
BssNAI GTATAC 1 cut(s) 141
Bst1107I GTATAC 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 204
BstBAI YACGTR 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 220
BstENI CCTNNNNNAGG 1 cut(s) 363
BstF5I GGATG 1 cut(s) 130
BstKTI GATC 2 cut(s) 57, 286
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 2 cut(s) 54, 283
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstSFI CTRYAG 1 cut(s) 85
BstSNI TACGTA 1 cut(s) 144
BstV2I GAAGAC 1 cut(s) 392
BstZ17I GTATAC 1 cut(s) 141
BtsCI GGATG 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 353
CseI GACGC 1 cut(s) 361
Csp6I GTAC 1 cut(s) 145
CviAII CATG 1 cut(s) 65
CviJI RGCY 9 cut(s) 32, 45, 82, 103, 190, 219, 299, 314, 409
CviKI_1 RGCY 9 cut(s) 32, 45, 82, 103, 190, 219, 299, 314, 409
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 1 cut(s) 220
DpnI GATC 2 cut(s) 56, 285
DpnII GATC 2 cut(s) 54, 283
DriI GACNNNNNGTC 1 cut(s) 176
Eam1104I CTCTTC 1 cut(s) 204
Eam1105I GACNNNNNGTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 204
Eco105I TACGTA 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 353
Eco57I CTGAAG 2 cut(s) 48, 384
EcoNI CCTNNNNNAGG 1 cut(s) 363
FaeI CATG 1 cut(s) 68
FaiI YATR 9 cut(s) 36, 48, 66, 87, 141, 167, 261, 273, 388
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FatI CATG 1 cut(s) 64
FblI GTMKAC 2 cut(s) 140, 375
FokI GGATG 1 cut(s) 137
HgaI GACGC 1 cut(s) 361
Hin1II CATG 1 cut(s) 68
HindIII AAGCTT 3 cut(s) 30, 217, 407
HinfI GANTC 2 cut(s) 292, 342
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 3 cut(s) 115, 141, 376
Hpy188I TCNGA 1 cut(s) 159
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 3 cut(s) 115, 141, 376
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 3 cut(s) 154, 244, 359
HpyCH4IV ACGT 1 cut(s) 143
HpyCH4V TGCA 2 cut(s) 15, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 1 cut(s) 220
HpySE526I ACGT 1 cut(s) 143
Hsp92II CATG 1 cut(s) 68
Kzo9I GATC 2 cut(s) 54, 283
LpnPI CCDG 3 cut(s) 208, 300, 372
MaeII ACGT 1 cut(s) 143
MalI GATC 2 cut(s) 56, 285
MboI GATC 2 cut(s) 54, 283
MboII GAAGA 4 cut(s) 218, 221, 373, 392
MluCI AATT 2 cut(s) 16, 119
MlyI GAGTC 2 cut(s) 301, 351
MnlI CCTC 1 cut(s) 366
MseI TTAA 2 cut(s) 78, 347
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeII GATC 2 cut(s) 54, 283
NlaIII CATG 1 cut(s) 68
NlaIV GGNNCC 1 cut(s) 232
Pfl23II CGTACG 1 cut(s) 144
PleI GAGTC 2 cut(s) 300, 350
PpsI GAGTC 2 cut(s) 300, 350
Ppu21I YACGTR 1 cut(s) 144
PspLI CGTACG 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 1 cut(s) 353
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SaqAI TTAA 2 cut(s) 78, 347
Sau3AI GATC 2 cut(s) 54, 283
Sau96I GGNCC 1 cut(s) 353
SchI GAGTC 2 cut(s) 301, 351
SfcI CTRYAG 1 cut(s) 85
SinI GGWCC 1 cut(s) 353
SnaBI TACGTA 1 cut(s) 144
Sse9I AATT 2 cut(s) 16, 119
TaiI ACGT 1 cut(s) 146
TaqI TCGA 1 cut(s) 237
TaqII GACCGA 1 cut(s) 341
TasI AATT 2 cut(s) 16, 119
Tru1I TTAA 2 cut(s) 78, 347
Tru9I TTAA 2 cut(s) 78, 347
TspDTI ATGAA 2 cut(s) 9, 232
TspGWI ACGGA 1 cut(s) 162
VpaK11BI GGWCC 1 cut(s) 353
XagI CCTNNNNNAGG 1 cut(s) 363
XmiI GTMKAC 2 cut(s) 140, 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.