Rroxscaffold_6G00406340

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
28812864 .. 28816663
3800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00406340.1

Sequence Viewer

Length: 462 bp
ATGGTGGTTTGGAAAGCTGCAGAGATGATCTGGGTCGAATGTTTTCTGGGTTTGAGTTTGACGTGCATTGACAAATCAACCAATTTTTTGGACGTTACGGTGAATGCTAAGATAAAGTTCCAGGCATTGCACATCAATGTATCAAACCCTAAAGAATTAAAAGTGAAGTGGTCCGACTTCCCCAATGATTTTGCATTTGGAGTCAGCACTGCTGCTGCACAGATTGAAGGATCAACAAATAAAGCAGGACGAGGACCAAGTGTTTGGGACGAGTTTATTAAGACATTCCCAGAGGGAACCTTGAGTGGAGGAATAAACCAAGAGGGTATTGATCACTATAACAACTTGATTGATGAACTAATCAAGAATGGCATCACACCCTATGTAACCATATTACATTTTGATCCACCACAAGCCTTGACAGTCAAGTATGGAGGCTTTCTCGATCGCTCCTTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

153

Amino Acids

16.97

Weight (kDa)

5.29

Isoelectric Point (pI)

22.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 59 - 95 5.4e-11 Glycosyl hydrolase family 1
Glyco_hydro_1 PF00232 95 - 153 3.5e-16 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 238, 398
AgsI TTSAA 1 cut(s) 227
AjiI CACGTC 1 cut(s) 63
AjnI CCWGG 1 cut(s) 120
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
AlwI GGATC 2 cut(s) 238, 398
ApeKI GCWGC 3 cut(s) 17, 212, 215
ArsI GACNNNNNNTTYG 2 cut(s) 246, 278
Asp700I GAANNNNTTC 1 cut(s) 42
AspS9I GGNCC 2 cut(s) 171, 254
AsuHPI GGTGA 1 cut(s) 112
AvaII GGWCC 2 cut(s) 171, 254
BbvI GCAGC 3 cut(s) 4, 199, 202
BciT130I CCWGG 1 cut(s) 122
BclI TGATCA 1 cut(s) 331
BfmI CTRYAG 1 cut(s) 18
BisI GCNGC 3 cut(s) 18, 213, 216
BlsI GCNGC 3 cut(s) 19, 214, 217
Bme1390I CCNGG 1 cut(s) 122
Bme18I GGWCC 2 cut(s) 171, 254
BmgBI CACGTC 1 cut(s) 63
BmgT120I GGNCC 2 cut(s) 171, 254
BmiI GGNNCC 1 cut(s) 298
BmrFI CCNGG 1 cut(s) 122
BmsI GCATC 1 cut(s) 381
BplI GAGNNNNNCTC 2 cut(s) 426, 458
BpuEI CTTGAG 1 cut(s) 322
Bse3DI GCAATG 1 cut(s) 125
BseBI CCWGG 1 cut(s) 122
BseMI GCAATG 1 cut(s) 125
BseXI GCAGC 3 cut(s) 4, 199, 202
BsgI GTGCAG 1 cut(s) 201
Bsh1285I CGRYCG 1 cut(s) 448
BsiEI CGRYCG 1 cut(s) 448
BslFI GGGAC 1 cut(s) 281
BsmFI GGGAC 1 cut(s) 281
BsmI GAATGC 1 cut(s) 109
Bsp143I GATC 5 cut(s) 27, 230, 331, 403, 445
BspLI GGNNCC 1 cut(s) 298
BspMAI CTGCAG 1 cut(s) 22
BspPI GGATC 2 cut(s) 238, 398
BsrDI GCAATG 1 cut(s) 125
BssMI GATC 5 cut(s) 27, 230, 331, 403, 445
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 2 cut(s) 100, 424
BstDEI CTNAG 1 cut(s) 108
BstKTI GATC 5 cut(s) 30, 233, 334, 406, 448
BstMBI GATC 5 cut(s) 27, 230, 331, 403, 445
BstMCI CGRYCG 1 cut(s) 448
BstNI CCWGG 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 120
BstSFI CTRYAG 1 cut(s) 18
BstV1I GCAGC 3 cut(s) 4, 199, 202
BstXI CCANNNNNNTGG 2 cut(s) 88, 264
BtrI CACGTC 1 cut(s) 63
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 207
Cfr13I GGNCC 2 cut(s) 171, 254
CspCI CAANNNNNGTGG 2 cut(s) 399, 434
CviJI RGCY 3 cut(s) 17, 416, 438
CviKI_1 RGCY 3 cut(s) 17, 416, 438
DdeI CTNAG 1 cut(s) 108
DpnI GATC 5 cut(s) 29, 232, 333, 405, 447
DpnII GATC 5 cut(s) 27, 230, 331, 403, 445
Eco47I GGWCC 2 cut(s) 171, 254
EcoRII CCWGG 1 cut(s) 120
FaiI YATR 4 cut(s) 339, 384, 392, 432
FaqI GGGAC 1 cut(s) 281
FbaI TGATCA 1 cut(s) 331
Fnu4HI GCNGC 3 cut(s) 18, 213, 216
Fsp4HI GCNGC 3 cut(s) 18, 213, 216
GluI GCNGC 3 cut(s) 18, 213, 216
HinfI GANTC 1 cut(s) 201
HphI GGTGA 1 cut(s) 112
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 2 cut(s) 364, 443
HpyAV CCTTC 1 cut(s) 221
HpyCH4III ACNGT 2 cut(s) 100, 424
HpyCH4IV ACGT 2 cut(s) 62, 93
HpyCH4V TGCA 5 cut(s) 20, 66, 130, 194, 218
HpyF3I CTNAG 1 cut(s) 108
HpySE526I ACGT 2 cut(s) 62, 93
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 5 cut(s) 27, 230, 331, 403, 445
LmnI GCTCC 1 cut(s) 455
LpnPI CCDG 6 cut(s) 16, 32, 107, 134, 231, 303
Lsp1109I GCAGC 3 cut(s) 4, 199, 202
LweI GCATC 1 cut(s) 381
MaeII ACGT 2 cut(s) 62, 93
MaeIII GTNAC 2 cut(s) 94, 385
MalI GATC 5 cut(s) 29, 232, 333, 405, 447
MboI GATC 5 cut(s) 27, 230, 331, 403, 445
MluCI AATT 2 cut(s) 82, 155
MlyI GAGTC 1 cut(s) 210
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 5 cut(s) 245, 286, 302, 316, 428
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 2 cut(s) 158, 279
MslI CAYNNNNRTG 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 122
Mva1269I GAATGC 1 cut(s) 109
MvaI CCWGG 1 cut(s) 122
NdeII GATC 5 cut(s) 27, 230, 331, 403, 445
NlaIV GGNNCC 1 cut(s) 298
PctI GAATGC 1 cut(s) 109
PdmI GAANNNNTTC 1 cut(s) 42
PkrI GCNGC 3 cut(s) 19, 214, 217
Ple19I CGATCG 1 cut(s) 448
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 120
PspGI CCWGG 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 298
PspPI GGNCC 2 cut(s) 171, 254
PstI CTGCAG 1 cut(s) 22
PvuI CGATCG 1 cut(s) 448
RseI CAYNNNNRTG 1 cut(s) 135
SaqAI TTAA 2 cut(s) 158, 279
SatI GCNGC 3 cut(s) 18, 213, 216
Sau3AI GATC 5 cut(s) 27, 230, 331, 403, 445
Sau96I GGNCC 2 cut(s) 171, 254
SchI GAGTC 1 cut(s) 210
ScrFI CCNGG 1 cut(s) 122
SetI ASST 4 cut(s) 19, 65, 96, 302
SfaNI GCATC 1 cut(s) 381
SfcI CTRYAG 1 cut(s) 18
SinI GGWCC 2 cut(s) 171, 254
SmiMI CAYNNNNRTG 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
Sse9I AATT 2 cut(s) 82, 155
StyD4I CCNGG 1 cut(s) 120
TaaI ACNGT 2 cut(s) 100, 424
TaiI ACGT 2 cut(s) 65, 96
TaqI TCGA 2 cut(s) 36, 444
TasI AATT 2 cut(s) 82, 155
Tru1I TTAA 2 cut(s) 158, 279
Tru9I TTAA 2 cut(s) 158, 279
TscAI CASTG 1 cut(s) 214
TseI GCWGC 3 cut(s) 17, 212, 215
TspDTI ATGAA 1 cut(s) 369
TspRI CASTG 1 cut(s) 214
VpaK11BI GGWCC 2 cut(s) 171, 254
XmnI GAANNNNTTC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.