Rh7CG117400

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000392
Physical Location & Seq
Reverse (-)
9002093 .. 9003544
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG117400.1

Sequence Viewer

Length: 639 bp
ATGTGGTGTGTTATGTCTTTCAGGAATGATTTTAAAGACTACAGTGAAATTTGCTTCAAATCATTCGGAGATAGAGTTAAAAATTGGTTCACAATCAATGAGCCAACAGTTTCTGCAGTTTACGGGTATGAACTTGGGATCGCCCCACCTGGGAAGTGTTCACTCAAGGAAGGAGTTTGTGTGTTTGGGTCTCCAGAGATTTGTTTAGTCCCGGCAGGTCCATGCAATTTTGGTGGTGATTCTAGCACAGAACCTTACATTGTAGCCCACAACCAAATTCTTGCTCATGCCACCGCGGCTAAGCTCTACAAAGAAAAATACCAAGCACAACAAAAGGGACTTTTTACAATAAGGAACGATGAACTTGCACTTGCTGATCAATTGAAGGACACAGAACGAATTTCATTTATTGTTCGTCATTTGTATCGTCTCGACAAAGCAATTAAGAACGGGGTAAACGTGAAAGGATACTTCTACTGGTCTCTCTTCGATGACTTTGAATGGGGAATGGGGTTTTTGCATAGGTATGGGCTATACTATATCGATTTCGATCACAATAACAGGCGCATCCCCAAGCAGTCTGCTGAGTGGTTCAAAGCTTTCCTTCAAAGTGATCATGTGACTCTAGCTAGCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

212

Amino Acids

24.36

Weight (kDa)

6.99

Isoelectric Point (pI)

28.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 9 - 113 2.3e-18 Glycosyl hydrolase family 1
Glyco_hydro_1 PF00232 126 - 204 6.9e-24 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 206
AccII CGCG 1 cut(s) 296
AciI CCGC 2 cut(s) 294, 296
AclWI GGATC 1 cut(s) 146
AcsI RAATTY 3 cut(s) 48, 276, 399
AfiI CCNNNNNNNGG 1 cut(s) 150
AgsI TTSAA 5 cut(s) 58, 385, 500, 595, 608
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 4 cut(s) 304, 599, 629, 636
AluI AGCT 4 cut(s) 304, 599, 629, 636
Alw26I GTCTC 3 cut(s) 195, 434, 486
AlwI GGATC 1 cut(s) 146
AlwNI CAGNNNCTG 1 cut(s) 113
ApeKI GCWGC 1 cut(s) 633
ApoI RAATTY 3 cut(s) 48, 276, 399
AspLEI GCGC 1 cut(s) 567
AspS9I GGNCC 1 cut(s) 218
AsuC2I CCSGG 1 cut(s) 212
AsuHPI GGTGA 1 cut(s) 248
AsuNHI GCTAGC 1 cut(s) 629
AvaII GGWCC 1 cut(s) 218
BcgI CGANNNNNNTGC 2 cut(s) 347, 381
BciT130I CCWGG 1 cut(s) 150
BciVI GTATCC 1 cut(s) 461
BclI TGATCA 2 cut(s) 376, 613
BcnI CCSGG 1 cut(s) 212
BcoDI GTCTC 3 cut(s) 195, 434, 486
BfaI CTAG 3 cut(s) 243, 626, 630
BfmI CTRYAG 2 cut(s) 40, 114
BfuAI ACCTGC 1 cut(s) 206
BfuI GTATCC 1 cut(s) 461
BglI GCCNNNNNGGC 1 cut(s) 296
BisI GCNGC 2 cut(s) 297, 634
BlpI GCTNAGC 1 cut(s) 300
BlsI GCNGC 2 cut(s) 298, 635
Bme1390I CCNGG 2 cut(s) 150, 212
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmrFI CCNGG 2 cut(s) 150, 212
BmsI GCATC 1 cut(s) 576
BmtI GCTAGC 1 cut(s) 633
BpmI CTGGAG 1 cut(s) 177
Bpu1102I GCTNAGC 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 149
BpuMI CCSGG 1 cut(s) 212
Bsa29I ATCGAT 1 cut(s) 543
BsaBI GATNNNNATC 1 cut(s) 549
BsaI GGTCTC 2 cut(s) 195, 486
BsaJI CCNNGG 2 cut(s) 149, 294
BsaXI ACNNNNNCTCC 4 cut(s) 60, 90, 165, 195
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse1I ACTGG 1 cut(s) 482
Bse8I GATNNNNATC 1 cut(s) 549
BseBI CCWGG 1 cut(s) 150
BseCI ATCGAT 1 cut(s) 543
BseDI CCNNGG 2 cut(s) 149, 294
BseGI GGATG 1 cut(s) 567
BseJI GATNNNNATC 1 cut(s) 549
BseLI CCNNNNNNNGG 1 cut(s) 150
BseMII CTCAG 1 cut(s) 576
BseNI ACTGG 1 cut(s) 482
Bsh1236I CGCG 1 cut(s) 296
BshVI ATCGAT 1 cut(s) 543
BsiSI CCGG 1 cut(s) 212
BslFI GGGAC 2 cut(s) 194, 351
BslI CCNNNNNNNGG 1 cut(s) 150
BsmAI GTCTC 3 cut(s) 195, 434, 486
BsmBI CGTCTC 1 cut(s) 434
BsmFI GGGAC 2 cut(s) 194, 351
Bso31I GGTCTC 2 cut(s) 195, 486
Bsp143I GATC 4 cut(s) 138, 376, 550, 613
Bsp1720I GCTNAGC 1 cut(s) 300
BspACI CCGC 2 cut(s) 294, 296
BspCNI CTCAG 1 cut(s) 577
BspDI ATCGAT 1 cut(s) 543
BspFNI CGCG 1 cut(s) 296
BspMAI CTGCAG 1 cut(s) 118
BspMI ACCTGC 1 cut(s) 206
BspOI GCTAGC 1 cut(s) 633
BspPI GGATC 1 cut(s) 146
BspTNI GGTCTC 2 cut(s) 195, 486
BsrI ACTGG 1 cut(s) 482
BssECI CCNNGG 2 cut(s) 149, 294
BssMI GATC 4 cut(s) 138, 376, 550, 613
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 2 cut(s) 44, 109
Bst6I CTCTTC 1 cut(s) 491
BstC8I GCNNGC 1 cut(s) 631
BstDEI CTNAG 2 cut(s) 300, 585
BstDSI CCRYGG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 567
BstFNI CGCG 1 cut(s) 296
BstHHI GCGC 1 cut(s) 567
BstKTI GATC 4 cut(s) 141, 379, 553, 616
BstMAI GTCTC 3 cut(s) 195, 434, 486
BstMBI GATC 4 cut(s) 138, 376, 550, 613
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 2 cut(s) 148, 210
BstSFI CTRYAG 2 cut(s) 40, 114
BstUI CGCG 1 cut(s) 296
Bsu15I ATCGAT 1 cut(s) 543
BsuI GTATCC 1 cut(s) 461
BsuTUI ATCGAT 1 cut(s) 543
BtgI CCRYGG 1 cut(s) 294
BtsCI GGATG 1 cut(s) 567
BtsIMutI CAGTG 1 cut(s) 49
BveI ACCTGC 1 cut(s) 206
Cac8I GCNNGC 1 cut(s) 631
CaiI CAGNNNCTG 1 cut(s) 113
CfoI GCGC 1 cut(s) 567
Cfr13I GGNCC 1 cut(s) 218
Cfr42I CCGCGG 1 cut(s) 297
ClaI ATCGAT 1 cut(s) 543
CspCI CAANNNNNGTGG 2 cut(s) 214, 249
CviAII CATG 3 cut(s) 222, 287, 617
CviJI RGCY 8 cut(s) 103, 266, 299, 304, 532, 599, 629, 636
CviKI_1 RGCY 8 cut(s) 103, 266, 299, 304, 532, 599, 629, 636
DdeI CTNAG 2 cut(s) 300, 585
DpnI GATC 4 cut(s) 140, 378, 552, 615
DpnII GATC 4 cut(s) 138, 376, 550, 613
DraI TTTAAA 1 cut(s) 34
Eam1104I CTCTTC 1 cut(s) 491
EarI CTCTTC 1 cut(s) 491
Eco31I GGTCTC 2 cut(s) 195, 486
Eco47I GGWCC 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 148
Esp3I CGTCTC 1 cut(s) 434
FaeI CATG 3 cut(s) 225, 290, 620
FaiI YATR 9 cut(s) 14, 129, 223, 288, 522, 528, 535, 540, 618
FalI AAGNNNNNCTT 2 cut(s) 588, 620
FaqI GGGAC 2 cut(s) 194, 351
FatI CATG 3 cut(s) 221, 286, 616
FbaI TGATCA 2 cut(s) 376, 613
Fnu4HI GCNGC 2 cut(s) 297, 634
FokI GGATG 1 cut(s) 554
Fsp4HI GCNGC 2 cut(s) 297, 634
FspBI CTAG 3 cut(s) 243, 626, 630
GlaI GCGC 1 cut(s) 566
GluI GCNGC 2 cut(s) 297, 634
GsuI CTGGAG 1 cut(s) 177
HapII CCGG 1 cut(s) 212
HhaI GCGC 1 cut(s) 567
Hin1II CATG 3 cut(s) 225, 290, 620
Hin6I GCGC 1 cut(s) 565
HinP1I GCGC 1 cut(s) 565
HindIII AAGCTT 1 cut(s) 597
HinfI GANTC 2 cut(s) 239, 622
HpaII CCGG 1 cut(s) 212
HphI GGTGA 1 cut(s) 248
Hpy166II GTNNAC 4 cut(s) 90, 121, 161, 457
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 3 cut(s) 22, 194, 431
Hpy8I GTNNAC 4 cut(s) 90, 121, 161, 457
HpyAV CCTTC 3 cut(s) 164, 379, 614
HpyCH4III ACNGT 2 cut(s) 44, 109
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 4 cut(s) 116, 225, 368, 520
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 2 cut(s) 300, 585
HpySE526I ACGT 1 cut(s) 459
Hsp92II CATG 3 cut(s) 225, 290, 620
HspAI GCGC 1 cut(s) 565
Ksp22I TGATCA 2 cut(s) 376, 613
KspI CCGCGG 1 cut(s) 297
Kzo9I GATC 4 cut(s) 138, 376, 550, 613
LpnPI CCDG 8 cut(s) 7, 135, 162, 201, 207, 225, 463, 547
LweI GCATC 1 cut(s) 576
MaeI CTAG 3 cut(s) 243, 626, 630
MaeII ACGT 1 cut(s) 459
MaeIII GTNAC 1 cut(s) 619
MalI GATC 4 cut(s) 140, 378, 552, 615
MboI GATC 4 cut(s) 138, 376, 550, 613
MboII GAAGA 1 cut(s) 478
MfeI CAATTG 1 cut(s) 380
MluCI AATT 7 cut(s) 48, 82, 226, 276, 380, 399, 441
MlyI GAGTC 1 cut(s) 616
MseI TTAA 3 cut(s) 33, 78, 444
MslI CAYNNNNRTG 1 cut(s) 525
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 2 cut(s) 150, 212
MunI CAATTG 1 cut(s) 380
MvaI CCWGG 1 cut(s) 150
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 296
NciI CCSGG 1 cut(s) 212
NdeII GATC 4 cut(s) 138, 376, 550, 613
NheI GCTAGC 1 cut(s) 629
NlaIII CATG 3 cut(s) 225, 290, 620
NmuCI GTSAC 1 cut(s) 619
PcsI WCGNNNNNNNCGW 1 cut(s) 456
PfeI GAWTC 1 cut(s) 239
PkrI GCNGC 2 cut(s) 298, 635
PleI GAGTC 1 cut(s) 616
PpsI GAGTC 1 cut(s) 616
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspPI GGNCC 1 cut(s) 218
PstI CTGCAG 1 cut(s) 118
PstNI CAGNNNCTG 1 cut(s) 113
RseI CAYNNNNRTG 1 cut(s) 525
SacII CCGCGG 1 cut(s) 297
SaqAI TTAA 3 cut(s) 33, 78, 444
SatI GCNGC 2 cut(s) 297, 634
Sau3AI GATC 4 cut(s) 138, 376, 550, 613
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 1 cut(s) 616
ScrFI CCNGG 2 cut(s) 150, 212
SetI ASST 9 cut(s) 151, 220, 256, 306, 462, 527, 601, 631, 638
SfaNI GCATC 1 cut(s) 576
SfcI CTRYAG 2 cut(s) 40, 114
Sfr303I CCGCGG 1 cut(s) 297
SgrBI CCGCGG 1 cut(s) 297
SinI GGWCC 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 525
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 7 cut(s) 48, 82, 226, 276, 380, 399, 441
SsiI CCGC 2 cut(s) 294, 296
SspMI CTAG 3 cut(s) 243, 626, 630
StyD4I CCNGG 2 cut(s) 148, 210
TaaI ACNGT 2 cut(s) 44, 109
TaiI ACGT 1 cut(s) 462
TaqI TCGA 4 cut(s) 432, 489, 543, 549
TasI AATT 7 cut(s) 48, 82, 226, 276, 380, 399, 441
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 3 cut(s) 33, 78, 444
Tru9I TTAA 3 cut(s) 33, 78, 444
TscAI CASTG 1 cut(s) 49
TseFI GTSAC 1 cut(s) 619
TseI GCWGC 1 cut(s) 633
Tsp45I GTSAC 1 cut(s) 619
TspDTI ATGAA 3 cut(s) 144, 375, 393
TspRI CASTG 1 cut(s) 49
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 3 cut(s) 48, 276, 399
XspI CTAG 3 cut(s) 243, 626, 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.