pycom06g13520

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000392
Physical Location & Seq
Forward (+)
18506915 .. 18507823
909 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g13520.5

Sequence Viewer

Length: 474 bp
ATGGAGTTTGAGTTTTCCGCCCTTATTGCAATAAAATCTTCTAGACATCCTATTGCTTGCCAATATAAAAGGTGGCTATGGACATCTCAAATATCATCATCTTCTTCGTTGACAAAGATGGCTCGTGGTCTCATTGCCATTTGTCTCATCACTTTGCTAGCCTGTTCATCTGTGGAAGGTCGAGGCCTAGAACTAGCACATTTAAATGGAGCTGAACATCAGTCCGTGGGGGATCATGTTCACGGAGTTGTAGCAAATGTGACAGTGGGTGGGTTCAACTTTCAGTTAAATTTAAGCAACCCTAAACTTGTTGAAGAACTGAAAATTAAACGATCAGACTTTCCATCCGATTTTCTGTTTGGAGCCGCCACTTCTGCTGCACAGAGCGAAGGGTCAGCTAAAGAAGGAGGGAGAGGACCGAGTGGTTGGGATCATCGCATGGAAACACTCCCAGTCGGAATAATGATCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

158

Amino Acids

16.9

Weight (kDa)

7.01

Isoelectric Point (pI)

46.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 18, 366
AclWI GGATC 2 cut(s) 240, 438
AcsI RAATTY 1 cut(s) 289
AgsI TTSAA 2 cut(s) 277, 314
AluBI AGCT 3 cut(s) 212, 398, 471
AluI AGCT 3 cut(s) 212, 398, 471
Alw26I GTCTC 2 cut(s) 134, 149
AlwI GGATC 2 cut(s) 240, 438
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 377
ApoI RAATTY 1 cut(s) 289
AspS9I GGNCC 1 cut(s) 416
AsuNHI GCTAGC 1 cut(s) 157
AvaII GGWCC 1 cut(s) 416
BauI CACGAG 1 cut(s) 123
BbvI GCAGC 1 cut(s) 364
BccI CCATC 2 cut(s) 112, 352
BclI TGATCA 1 cut(s) 465
BcoDI GTCTC 2 cut(s) 134, 149
BfaI CTAG 4 cut(s) 42, 158, 188, 194
BisI GCNGC 2 cut(s) 366, 378
BlsI GCNGC 2 cut(s) 367, 379
Bme18I GGWCC 1 cut(s) 416
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 1 cut(s) 364
BmrI ACTGGG 1 cut(s) 446
BmtI GCTAGC 1 cut(s) 161
BmuI ACTGGG 1 cut(s) 446
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 225
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 452
Bse3DI GCAATG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 2 cut(s) 46, 344
BseMI GCAATG 1 cut(s) 132
BseNI ACTGG 1 cut(s) 452
BseXI GCAGC 1 cut(s) 364
BsgI GTGCAG 1 cut(s) 363
BshFI GGCC 1 cut(s) 186
BsmAI GTCTC 2 cut(s) 134, 149
BsnI GGCC 1 cut(s) 186
Bso31I GGTCTC 1 cut(s) 134
Bsp143I GATC 4 cut(s) 232, 332, 430, 465
BspACI CCGC 2 cut(s) 18, 366
BspANI GGCC 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 364
BspOI GCTAGC 1 cut(s) 161
BspPI GGATC 2 cut(s) 240, 438
BspTNI GGTCTC 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 132
BsrI ACTGG 1 cut(s) 452
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 4 cut(s) 232, 332, 430, 465
BssSI CACGAG 1 cut(s) 123
Bst2BI CACGAG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 265
BstC8I GCNNGC 2 cut(s) 58, 159
BstDSI CCRYGG 1 cut(s) 225
BstF5I GGATG 2 cut(s) 46, 344
BstKTI GATC 4 cut(s) 235, 335, 433, 468
BstMAI GTCTC 2 cut(s) 134, 149
BstMBI GATC 4 cut(s) 232, 332, 430, 465
BstMWI GCNNNNNNNGC 2 cut(s) 26, 374
BstV1I GCAGC 1 cut(s) 364
BsuRI GGCC 1 cut(s) 186
BtgI CCRYGG 1 cut(s) 225
BtgZI GCGATG 1 cut(s) 419
BtsCI GGATG 2 cut(s) 46, 344
BtsIMutI CAGTG 1 cut(s) 270
Cac8I GCNNGC 2 cut(s) 58, 159
Cfr13I GGNCC 1 cut(s) 416
CviAII CATG 2 cut(s) 236, 439
CviJI RGCY 8 cut(s) 76, 122, 161, 186, 212, 365, 398, 471
CviKI_1 RGCY 8 cut(s) 76, 122, 161, 186, 212, 365, 398, 471
DpnI GATC 4 cut(s) 234, 334, 432, 467
DpnII GATC 4 cut(s) 232, 332, 430, 465
DraI TTTAAA 1 cut(s) 204
EciI GGCGGA 1 cut(s) 7
Eco147I AGGCCT 1 cut(s) 186
Eco31I GGTCTC 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 416
FaeI CATG 2 cut(s) 239, 442
FaiI YATR 4 cut(s) 66, 79, 237, 440
FatI CATG 2 cut(s) 235, 438
FbaI TGATCA 1 cut(s) 465
Fnu4HI GCNGC 2 cut(s) 366, 378
FokI GGATG 2 cut(s) 33, 331
Fsp4HI GCNGC 2 cut(s) 366, 378
FspBI CTAG 4 cut(s) 42, 158, 188, 194
GluI GCNGC 2 cut(s) 366, 378
HaeIII GGCC 1 cut(s) 186
Hin1II CATG 2 cut(s) 239, 442
HincII GTYRAC 1 cut(s) 111
HindII GTYRAC 1 cut(s) 111
Hpy166II GTNNAC 2 cut(s) 111, 241
Hpy188I TCNGA 3 cut(s) 337, 349, 458
Hpy188III TCNNGA 1 cut(s) 42
Hpy8I GTNNAC 2 cut(s) 111, 241
HpyAV CCTTC 3 cut(s) 170, 383, 398
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 2 cut(s) 29, 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 374
Hsp92II CATG 2 cut(s) 239, 442
Ksp22I TGATCA 1 cut(s) 465
Kzo9I GATC 4 cut(s) 232, 332, 430, 465
LmnI GCTCC 2 cut(s) 209, 362
LpnPI CCDG 2 cut(s) 175, 465
Lsp1109I GCAGC 1 cut(s) 364
MaeI CTAG 4 cut(s) 42, 158, 188, 194
MaeIII GTNAC 1 cut(s) 259
MalI GATC 4 cut(s) 234, 334, 432, 467
MboI GATC 4 cut(s) 232, 332, 430, 465
MboII GAAGA 4 cut(s) 30, 93, 96, 326
MluCI AATT 2 cut(s) 289, 324
MmeI TCCRAC 1 cut(s) 436
MnlI CCTC 3 cut(s) 176, 401, 407
MseI TTAA 4 cut(s) 203, 287, 293, 327
MslI CAYNNNNRTG 1 cut(s) 204
MwoI GCNNNNNNNGC 2 cut(s) 26, 374
NdeII GATC 4 cut(s) 232, 332, 430, 465
NheI GCTAGC 1 cut(s) 157
NlaIII CATG 2 cut(s) 239, 442
NlaIV GGNNCC 1 cut(s) 364
NmuCI GTSAC 1 cut(s) 259
PceI AGGCCT 1 cut(s) 186
PkrI GCNGC 2 cut(s) 367, 379
PspN4I GGNNCC 1 cut(s) 364
PspPI GGNCC 1 cut(s) 416
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 4 cut(s) 203, 287, 293, 327
SatI GCNGC 2 cut(s) 366, 378
Sau3AI GATC 4 cut(s) 232, 332, 430, 465
Sau96I GGNCC 1 cut(s) 416
SetI ASST 5 cut(s) 74, 181, 214, 400, 473
SinI GGWCC 1 cut(s) 416
SmiI ATTTAAAT 1 cut(s) 204
SmiMI CAYNNNNRTG 1 cut(s) 204
Sse9I AATT 2 cut(s) 289, 324
SseBI AGGCCT 1 cut(s) 186
SsiI CCGC 2 cut(s) 18, 366
SspMI CTAG 4 cut(s) 42, 158, 188, 194
StuI AGGCCT 1 cut(s) 186
SwaI ATTTAAAT 1 cut(s) 204
TaaI ACNGT 1 cut(s) 265
TaqI TCGA 1 cut(s) 181
TaqII GACCGA 1 cut(s) 433
TasI AATT 2 cut(s) 289, 324
TauI GCSGC 1 cut(s) 368
Tru1I TTAA 4 cut(s) 203, 287, 293, 327
Tru9I TTAA 4 cut(s) 203, 287, 293, 327
TscAI CASTG 1 cut(s) 270
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 1 cut(s) 377
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 1 cut(s) 156
TspGWI ACGGA 2 cut(s) 214, 258
TspRI CASTG 1 cut(s) 270
VpaK11BI GGWCC 1 cut(s) 416
XapI RAATTY 1 cut(s) 289
XbaI TCTAGA 1 cut(s) 41
XspI CTAG 4 cut(s) 42, 158, 188, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.