Rh7CG116400

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000392
Physical Location & Seq
Forward (+)
8966374 .. 8969556
3183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG116400.1

Sequence Viewer

Length: 687 bp
ATGGGCTTAGCTCTTCACCCTCGAACTCGTGCTGTGAATGCTGAGACCAACTTTCACATGAATGCATCAAACCCTGAAGAATTGAACGTGAAGTGGACTGAATTCCCTAATGATTTTGTTTTTGGAGTCAGCACTGCTGCTACACAGATTGAAGGATCGGCAAAAGAAGCAGGAAAAGGACCAAGTGTTTGGGACAAGTTTGTTGAGATCCCTGCAAGTCAAGCTGAACCATTGAGTTATCACAATGACGCTTTGGCTACATCTACTGAAACAAATGCAAATGGAGTCTTAATTGGTCCTCTTGCTGATGGAAGCATCTACATCTTCTCTTATCCACAAGGTCTTCAGAAACTTTTGGAGTTCATGAAGCAAAACTACCAAAGTCCTAAAATCTACATTTCCGAAAATGGAATTACAGAAAAAAAGGACGATAATCTTGGACTCGATGTAGCAGTCAAGGATCCACATAGAATTGAGTGCATTCTTCGACACTTGTACAGGATCAAGATGGCAATGAAGAATGGGGTGAATGTCAAAGGATATTTCCACTGGGCTCCATTCGATGACTTTGAGTGGGGCGAAGGCTATCTTGCAAGGTTCGGACTTTACTATGTCGACTACAAAGACAATCTCAAGCGCATTCCTAAAGAATCTGCTAAGTGGCTACCAAATTTCTTAAAGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

228

Amino Acids

25.77

Weight (kDa)

6.09

Isoelectric Point (pI)

30.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 34 - 76 7.8e-13 Glycosyl hydrolase family 1
Glyco_hydro_1 PF00232 107 - 225 9.2e-35 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 615
AclWI GGATC 5 cut(s) 163, 202, 455, 468, 509
AcsI RAATTY 2 cut(s) 101, 670
AcuI CTGAAG 2 cut(s) 96, 329
AfaI GTAC 1 cut(s) 497
AgsI TTSAA 2 cut(s) 85, 152
AluBI AGCT 2 cut(s) 11, 224
AluI AGCT 2 cut(s) 11, 224
Alw26I GTCTC 1 cut(s) 38
AlwI GGATC 5 cut(s) 163, 202, 455, 468, 509
ApeKI GCWGC 1 cut(s) 137
ApoI RAATTY 2 cut(s) 101, 670
ArsI GACNNNNNNTTYG 2 cut(s) 171, 203
AspLEI GCGC 1 cut(s) 639
AspS9I GGNCC 2 cut(s) 179, 296
AsuHPI GGTGA 2 cut(s) 8, 538
AvaII GGWCC 2 cut(s) 179, 296
BamHI GGATCC 1 cut(s) 460
BanII GRGCYC 1 cut(s) 556
BarI GAAGNNNNNNTAC 2 cut(s) 359, 391
BauI CACGAG 1 cut(s) 27
BbsI GAAGAC 1 cut(s) 335
BbvI GCAGC 1 cut(s) 124
BccI CCATC 2 cut(s) 302, 502
BcoDI GTCTC 1 cut(s) 38
BisI GCNGC 1 cut(s) 138
BlpI GCTNAGC 1 cut(s) 7
BlsI GCNGC 1 cut(s) 139
Bme18I GGWCC 2 cut(s) 179, 296
BmgT120I GGNCC 2 cut(s) 179, 296
BmiI GGNNCC 2 cut(s) 462, 555
BmrI ACTGGG 1 cut(s) 559
BmsI GCATC 2 cut(s) 74, 324
BmuI ACTGGG 1 cut(s) 559
BpiI GAAGAC 1 cut(s) 335
Bpu1102I GCTNAGC 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 617
BsaI GGTCTC 1 cut(s) 38
Bse1I ACTGG 1 cut(s) 554
Bse3DI GCAATG 1 cut(s) 519
BseMI GCAATG 1 cut(s) 519
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 554
BseXI GCAGC 1 cut(s) 124
BslFI GGGAC 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 38
BsmFI GGGAC 1 cut(s) 206
BsmI GAATGC 4 cut(s) 43, 67, 480, 639
Bso31I GGTCTC 1 cut(s) 38
Bsp1286I GDGCHC 1 cut(s) 556
Bsp1407I TGTACA 1 cut(s) 495
Bsp143I GATC 4 cut(s) 155, 207, 460, 501
Bsp1720I GCTNAGC 1 cut(s) 7
BspCNI CTCAG 1 cut(s) 34
BspHI TCATGA 1 cut(s) 363
BspLI GGNNCC 2 cut(s) 462, 555
BspPI GGATC 5 cut(s) 163, 202, 455, 468, 509
BspQI GCTCTTC 1 cut(s) 18
BspTNI GGTCTC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 519
BsrGI TGTACA 1 cut(s) 495
BsrI ACTGG 1 cut(s) 554
BssMI GATC 4 cut(s) 155, 207, 460, 501
BssSI CACGAG 1 cut(s) 27
Bst2BI CACGAG 1 cut(s) 27
Bst6I CTCTTC 1 cut(s) 18
BstAUI TGTACA 1 cut(s) 495
BstDEI CTNAG 3 cut(s) 7, 42, 657
BstHHI GCGC 1 cut(s) 639
BstKTI GATC 4 cut(s) 158, 210, 463, 504
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 4 cut(s) 155, 207, 460, 501
BstMWI GCNNNNNNNGC 3 cut(s) 38, 167, 221
BstV1I GCAGC 1 cut(s) 124
BstV2I GAAGAC 1 cut(s) 335
BstX2I RGATCY 2 cut(s) 207, 460
BstXI CCANNNNNNTGG 1 cut(s) 189
BstYI RGATCY 2 cut(s) 207, 460
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 2 cut(s) 132, 547
CciI TCATGA 1 cut(s) 363
CfoI GCGC 1 cut(s) 639
Cfr13I GGNCC 2 cut(s) 179, 296
CseI GACGC 1 cut(s) 257
Csp6I GTAC 1 cut(s) 496
CviAII CATG 2 cut(s) 58, 364
CviJI RGCY 7 cut(s) 6, 11, 224, 257, 554, 585, 664
CviKI_1 RGCY 7 cut(s) 6, 11, 224, 257, 554, 585, 664
CviQI GTAC 1 cut(s) 496
DdeI CTNAG 3 cut(s) 7, 42, 657
DpnI GATC 4 cut(s) 157, 209, 462, 503
DpnII GATC 4 cut(s) 155, 207, 460, 501
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 556
Eco31I GGTCTC 1 cut(s) 38
Eco47I GGWCC 2 cut(s) 179, 296
Eco57I CTGAAG 2 cut(s) 96, 329
EcoRI GAATTC 1 cut(s) 101
EcoT22I ATGCAT 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 556
FaeI CATG 2 cut(s) 61, 367
FaiI YATR 4 cut(s) 59, 365, 468, 612
FalI AAGNNNNNCTT 2 cut(s) 573, 605
FaqI GGGAC 1 cut(s) 206
FatI CATG 2 cut(s) 57, 363
FblI GTMKAC 1 cut(s) 615
Fnu4HI GCNGC 1 cut(s) 138
FriOI GRGCYC 1 cut(s) 556
Fsp4HI GCNGC 1 cut(s) 138
GlaI GCGC 1 cut(s) 638
GluI GCNGC 1 cut(s) 138
HgaI GACGC 1 cut(s) 257
HhaI GCGC 1 cut(s) 639
Hin1II CATG 2 cut(s) 61, 367
Hin6I GCGC 1 cut(s) 637
HinP1I GCGC 1 cut(s) 637
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HinfI GANTC 4 cut(s) 126, 285, 441, 650
HphI GGTGA 2 cut(s) 8, 538
Hpy166II GTNNAC 2 cut(s) 96, 616
Hpy188I TCNGA 3 cut(s) 348, 403, 602
Hpy188III TCNNGA 2 cut(s) 364, 505
Hpy8I GTNNAC 2 cut(s) 96, 616
HpyAV CCTTC 2 cut(s) 146, 575
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 5 cut(s) 65, 215, 278, 480, 593
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 167, 221
HpyF3I CTNAG 3 cut(s) 7, 42, 657
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 2 cut(s) 61, 367
HspAI GCGC 1 cut(s) 637
Kzo9I GATC 4 cut(s) 155, 207, 460, 501
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 1 cut(s) 559
LpnPI CCDG 5 cut(s) 87, 156, 225, 484, 535
Lsp1109I GCAGC 1 cut(s) 124
LweI GCATC 2 cut(s) 74, 324
MaeII ACGT 1 cut(s) 87
MalI GATC 4 cut(s) 157, 209, 462, 503
MboI GATC 4 cut(s) 155, 207, 460, 501
MboII GAAGA 6 cut(s) 5, 89, 316, 335, 476, 529
MflI RGATCY 2 cut(s) 207, 460
MhlI GDGCHC 1 cut(s) 556
MluCI AATT 6 cut(s) 80, 101, 291, 411, 471, 670
MlyI GAGTC 3 cut(s) 135, 294, 435
MnlI CCTC 2 cut(s) 30, 309
Mph1103I ATGCAT 1 cut(s) 67
MseI TTAA 2 cut(s) 290, 677
MslI CAYNNNNRTG 1 cut(s) 60
Mva1269I GAATGC 4 cut(s) 43, 67, 480, 639
MwoI GCNNNNNNNGC 3 cut(s) 38, 167, 221
NdeII GATC 4 cut(s) 155, 207, 460, 501
NlaIII CATG 2 cut(s) 61, 367
NlaIV GGNNCC 2 cut(s) 462, 555
NsiI ATGCAT 1 cut(s) 67
PagI TCATGA 1 cut(s) 363
PciSI GCTCTTC 1 cut(s) 18
PctI GAATGC 4 cut(s) 43, 67, 480, 639
PfeI GAWTC 1 cut(s) 650
PkrI GCNGC 1 cut(s) 139
PleI GAGTC 3 cut(s) 134, 293, 435
PpsI GAGTC 3 cut(s) 134, 293, 435
PspN4I GGNNCC 2 cut(s) 462, 555
PspPI GGNCC 2 cut(s) 179, 296
PsuI RGATCY 2 cut(s) 207, 460
RsaI GTAC 1 cut(s) 497
RsaNI GTAC 1 cut(s) 496
RseI CAYNNNNRTG 1 cut(s) 60
SalI GTCGAC 1 cut(s) 614
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 2 cut(s) 290, 677
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 4 cut(s) 155, 207, 460, 501
Sau96I GGNCC 2 cut(s) 179, 296
SchI GAGTC 3 cut(s) 135, 294, 435
SduI GDGCHC 1 cut(s) 556
SetI ASST 5 cut(s) 13, 90, 226, 343, 599
SfaNI GCATC 2 cut(s) 74, 324
SinI GGWCC 2 cut(s) 179, 296
SmiMI CAYNNNNRTG 1 cut(s) 60
SmlI CTYRAG 1 cut(s) 632
SmoI CTYRAG 1 cut(s) 632
Sse9I AATT 6 cut(s) 80, 101, 291, 411, 471, 670
TaiI ACGT 1 cut(s) 90
TaqI TCGA 5 cut(s) 22, 444, 487, 561, 615
TasI AATT 6 cut(s) 80, 101, 291, 411, 471, 670
TatI WGTACW 1 cut(s) 495
TfiI GAWTC 1 cut(s) 650
Tru1I TTAA 2 cut(s) 290, 677
Tru9I TTAA 2 cut(s) 290, 677
TscAI CASTG 2 cut(s) 139, 554
TseI GCWGC 1 cut(s) 137
TspDTI ATGAA 4 cut(s) 74, 352, 380, 530
TspRI CASTG 2 cut(s) 139, 554
VpaK11BI GGWCC 2 cut(s) 179, 296
XapI RAATTY 2 cut(s) 101, 670
XmiI GTMKAC 1 cut(s) 615
Zsp2I ATGCAT 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.