Rorug03G0295600

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
30467806 .. 30471731
3926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0295600.1

Sequence Viewer

Length: 1134 bp
ATGCAACATCACAGAGCTTATGGACACCAGGTTTTGCCAGTTTTCTATGATGTGGATCCAAAGGATGTGAGGAATCAGAGTGGGAGTTTTGCAAAAGCATTTGCCAAACATGTACTCGAGCAAAAAATGGATAAGGTGGAGGAGTGGCGAAGAGCACTCGGCGATGTTGCAGACATGGGAGGGATGGTTTTAGGAGATCAGTATGAGTCACAGTTCATCCAACATATTGTTCATGAAACTCTGAAAATGCTGAATGACTCGTTATTTAAAGGTTGTTCCAATATTGTTGGAATGCCCTACCGTGTGCAAAAGCTGAATAGATGGCTGAAAGATGGATCAAATGATGTTGATGTGGCTGTGATATGTGGCATTGGTGGAATTGGAAAGACCACAGTTGCCCGAGTTGCTTATAACCTAAACTTTTACAGATTTCAAGGTAGCAGCTTTCTTGAAGATATAGGAGGAACTTTAGAAGAAGACGATGGTGTTCTTGACCTCCAAAAAAAACTTCTTTCAGATATCCAAAGGGGTGAAGAGACAGAAGCCATAGACATTAGCAGCCCAAATGAAGGAAGAAGCAAGATCAAACACGCTGTGTGTTGCAAAAGAGTTCTTATTGTTTTTGATGATGTGTCCCACTCTAACCAATTCAATGAAATTCTTGGAAAACGCAGATGGTACTGTCCAGGAAGTAAACTTATCATTACAACTAAAGATAAACATTTGCTGAAAAATCAAGAAATTCCTCATGCAGTATTTGAGGTTGAAAAATTTGATGAGCATGAATCACTTGAGCTTTTTTGCTTGCGTGCCTTTGGAGAAGCCCATCCTTTTGAAGGTTTCCAGGAGATATCAAGACTTGCGGTACAATTATCCGGAGGGCTGCCATTAGCACTTCATGTTTTGGCAGCATGCCTGTCTAGAAAAAGTGTAGATCTATGGCAAAAAACATTACAGAAACGCAATCCTGCTCATGATGGCGGAATCCAAAATATTCAAGTCAAGATCAGTGGTGGCCAATGGATAACCAAGATATTTCTCATTTTCTCTTTCTGTCTCCTCTTTTCTACTATACTCAATAAATGGAAAACTGCTTTAGGCCCAGTTTGGTATTATTGCTGTGAGAAAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

377

Amino Acids

42.73

Weight (kDa)

7.21

Isoelectric Point (pI)

44.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 7 - 88 7.3e-16 TIR domain
NB-ARC PF00931 101 - 272 8e-17 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 411
AccIII TCCGGA 1 cut(s) 875
AciI CCGC 2 cut(s) 863, 981
AclWI GGATC 3 cut(s) 50, 63, 343
AcoI YGGCCR 1 cut(s) 1015
AcsI RAATTY 3 cut(s) 657, 741, 770
AdeI CACNNNGTG 1 cut(s) 595
AfaI GTAC 3 cut(s) 114, 680, 867
AfiI CCNNNNNNNGG 2 cut(s) 569, 836
AflIII ACRYGT 1 cut(s) 109
AgsI TTSAA 6 cut(s) 434, 452, 652, 767, 836, 998
AjnI CCWGG 3 cut(s) 27, 685, 843
AjuI GAANNNNNNNTTGG 4 cut(s) 213, 245, 492, 524
AluBI AGCT 4 cut(s) 17, 313, 444, 796
AluI AGCT 4 cut(s) 17, 313, 444, 796
Alw21I GWGCWC 1 cut(s) 157
Alw26I GTCTC 2 cut(s) 530, 1061
AlwI GGATC 3 cut(s) 50, 63, 343
Ama87I CYCGRG 2 cut(s) 116, 399
Aor13HI TCCGGA 1 cut(s) 875
AoxI GGCC 2 cut(s) 1015, 1099
ApeKI GCWGC 4 cut(s) 441, 558, 883, 908
ApoI RAATTY 3 cut(s) 657, 741, 770
AspS9I GGNCC 1 cut(s) 1100
AsuHPI GGTGA 1 cut(s) 542
AvaI CYCGRG 2 cut(s) 116, 399
BalI TGGCCA 1 cut(s) 1017
BamHI GGATCC 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 483
Bbv12I GWGCWC 1 cut(s) 157
BbvI GCAGC 4 cut(s) 453, 570, 870, 920
BccI CCATC 7 cut(s) 178, 315, 326, 476, 669, 834, 971
BciT130I CCWGG 3 cut(s) 29, 687, 845
BcoDI GTCTC 2 cut(s) 530, 1061
BfaI CTAG 1 cut(s) 921
BglII AGATCT 1 cut(s) 934
BisI GCNGC 4 cut(s) 442, 559, 884, 909
BlsI GCNGC 4 cut(s) 443, 560, 885, 910
Bme1390I CCNGG 3 cut(s) 29, 687, 845
BmeT110I CYCGRG 2 cut(s) 116, 399
BmgT120I GGNCC 1 cut(s) 1100
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 3 cut(s) 29, 687, 845
BmrI ACTGGG 1 cut(s) 1097
BmuI ACTGGG 1 cut(s) 1097
BpiI GAAGAC 1 cut(s) 483
BpuEI CTTGAG 1 cut(s) 812
BsaBI GATNNNNATC 1 cut(s) 54
BsaWI WCCGGW 1 cut(s) 875
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 2 cut(s) 569, 836
Bse1I ACTGG 2 cut(s) 38, 1103
Bse8I GATNNNNATC 1 cut(s) 54
BseAI TCCGGA 1 cut(s) 875
BseBI CCWGG 3 cut(s) 29, 687, 845
BseGI GGATG 4 cut(s) 70, 189, 216, 826
BseJI GATNNNNATC 1 cut(s) 54
BseLI CCNNNNNNNGG 2 cut(s) 569, 836
BseNI ACTGG 2 cut(s) 38, 1103
BseRI GAGGAG 2 cut(s) 155, 1049
BseXI GCAGC 4 cut(s) 453, 570, 870, 920
BshFI GGCC 2 cut(s) 1017, 1101
BsiHKAI GWGCWC 1 cut(s) 157
BsiHKCI CYCGRG 2 cut(s) 116, 399
BsiSI CCGG 1 cut(s) 876
BslFI GGGAC 1 cut(s) 619
BslI CCNNNNNNNGG 2 cut(s) 569, 836
BsmAI GTCTC 2 cut(s) 530, 1061
BsmFI GGGAC 1 cut(s) 619
BsmI GAATGC 1 cut(s) 297
BsnI GGCC 2 cut(s) 1017, 1101
BsoBI CYCGRG 2 cut(s) 116, 399
Bsp1286I GDGCHC 1 cut(s) 157
Bsp13I TCCGGA 1 cut(s) 875
Bsp143I GATC 6 cut(s) 55, 196, 335, 582, 934, 1005
BspACI CCGC 2 cut(s) 863, 981
BspANI GGCC 2 cut(s) 1017, 1101
BspEI TCCGGA 1 cut(s) 875
BspHI TCATGA 2 cut(s) 232, 973
BspLI GGNNCC 1 cut(s) 57
BspPI GGATC 3 cut(s) 50, 63, 343
BspQI GCTCTTC 1 cut(s) 145
BsrI ACTGG 2 cut(s) 38, 1103
BssMI GATC 6 cut(s) 55, 196, 335, 582, 934, 1005
Bst2UI CCWGG 3 cut(s) 29, 687, 845
Bst4CI ACNGT 4 cut(s) 213, 302, 394, 683
Bst6I CTCTTC 2 cut(s) 145, 528
BstC8I GCNNGC 3 cut(s) 806, 810, 913
BstDEI CTNAG 1 cut(s) 1131
BstENI CCTNNNNNAGG 1 cut(s) 834
BstF5I GGATG 4 cut(s) 70, 189, 216, 826
BstKTI GATC 6 cut(s) 58, 199, 338, 585, 937, 1008
BstMAI GTCTC 2 cut(s) 530, 1061
BstMBI GATC 6 cut(s) 55, 196, 335, 582, 934, 1005
BstMWI GCNNNNNNNGC 1 cut(s) 404
BstNI CCWGG 3 cut(s) 29, 687, 845
BstNSI RCATGY 2 cut(s) 113, 915
BstSCI CCNGG 3 cut(s) 27, 685, 843
BstV1I GCAGC 4 cut(s) 453, 570, 870, 920
BstV2I GAAGAC 1 cut(s) 483
BstX2I RGATCY 2 cut(s) 55, 934
BstYI RGATCY 2 cut(s) 55, 934
BsuRI GGCC 2 cut(s) 1017, 1101
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 4 cut(s) 70, 189, 216, 826
BtsIMutI CAGTG 1 cut(s) 1015
Cac8I GCNNGC 3 cut(s) 806, 810, 913
CciI TCATGA 2 cut(s) 232, 973
Cfr13I GGNCC 1 cut(s) 1100
CsiI ACCWGGT 1 cut(s) 27
Csp6I GTAC 3 cut(s) 113, 679, 866
CspCI CAANNNNNGTGG 2 cut(s) 991, 1026
CviAII CATG 8 cut(s) 110, 175, 233, 749, 782, 899, 912, 974
CviQI GTAC 3 cut(s) 113, 679, 866
DdeI CTNAG 1 cut(s) 1131
DpnI GATC 6 cut(s) 57, 198, 337, 584, 936, 1007
DpnII GATC 6 cut(s) 55, 196, 335, 582, 934, 1005
DraI TTTAAA 1 cut(s) 268
DraIII CACNNNGTG 1 cut(s) 595
EaeI YGGCCR 1 cut(s) 1015
Eam1104I CTCTTC 2 cut(s) 145, 528
EarI CTCTTC 2 cut(s) 145, 528
EciI GGCGGA 1 cut(s) 996
Eco32I GATATC 2 cut(s) 520, 852
Eco88I CYCGRG 2 cut(s) 116, 399
EcoNI CCTNNNNNAGG 1 cut(s) 834
EcoRII CCWGG 3 cut(s) 27, 685, 843
EcoRV GATATC 2 cut(s) 520, 852
FaeI CATG 8 cut(s) 113, 178, 236, 752, 785, 902, 915, 977
FaqI GGGAC 1 cut(s) 619
FatI CATG 8 cut(s) 109, 174, 232, 748, 781, 898, 911, 973
Fnu4HI GCNGC 4 cut(s) 442, 559, 884, 909
FokI GGATG 4 cut(s) 77, 196, 203, 813
Fsp4HI GCNGC 4 cut(s) 442, 559, 884, 909
FspBI CTAG 1 cut(s) 921
GluI GCNGC 4 cut(s) 442, 559, 884, 909
HaeIII GGCC 2 cut(s) 1017, 1101
HapII CCGG 1 cut(s) 876
Hin1II CATG 8 cut(s) 113, 178, 236, 752, 785, 902, 915, 977
HinfI GANTC 5 cut(s) 73, 206, 257, 785, 984
HpaII CCGG 1 cut(s) 876
HphI GGTGA 1 cut(s) 542
Hpy166II GTNNAC 1 cut(s) 695
Hpy188I TCNGA 3 cut(s) 78, 243, 517
Hpy188III TCNNGA 9 cut(s) 233, 449, 491, 737, 855, 876, 921, 974, 1003
Hpy8I GTNNAC 1 cut(s) 695
HpyAV CCTTC 2 cut(s) 563, 830
HpyCH4III ACNGT 4 cut(s) 213, 302, 394, 683
HpyCH4V TGCA 6 cut(s) 4, 92, 170, 307, 603, 752
HpyF10VI GCNNNNNNNGC 1 cut(s) 404
HpyF3I CTNAG 1 cut(s) 1131
Hsp92II CATG 8 cut(s) 113, 178, 236, 752, 785, 902, 915, 977
Kpn2I TCCGGA 1 cut(s) 875
Kzo9I GATC 6 cut(s) 55, 196, 335, 582, 934, 1005
LguI GCTCTTC 1 cut(s) 145
Lsp1109I GCAGC 4 cut(s) 453, 570, 870, 920
MabI ACCWGGT 1 cut(s) 27
MaeI CTAG 1 cut(s) 921
MaeIII GTNAC 1 cut(s) 207
MalI GATC 6 cut(s) 57, 198, 337, 584, 936, 1007
MboI GATC 6 cut(s) 55, 196, 335, 582, 934, 1005
MboII GAAGA 6 cut(s) 162, 464, 485, 488, 545, 585
MflI RGATCY 2 cut(s) 55, 934
MhlI GDGCHC 1 cut(s) 157
MlsI TGGCCA 1 cut(s) 1017
MluCI AATT 6 cut(s) 378, 647, 657, 741, 770, 869
MluNI TGGCCA 1 cut(s) 1017
MlyI GAGTC 2 cut(s) 215, 251
MmeI TCCRAC 2 cut(s) 244, 268
MnlI CCTC 9 cut(s) 63, 133, 173, 455, 506, 754, 756, 872, 1070
Mox20I TGGCCA 1 cut(s) 1017
MroI TCCGGA 1 cut(s) 875
MscI TGGCCA 1 cut(s) 1017
MseI TTAA 1 cut(s) 267
Msp20I TGGCCA 1 cut(s) 1017
MspI CCGG 1 cut(s) 876
MspR9I CCNGG 3 cut(s) 29, 687, 845
Mva1269I GAATGC 1 cut(s) 297
MvaI CCWGG 3 cut(s) 29, 687, 845
MwoI GCNNNNNNNGC 1 cut(s) 404
NdeII GATC 6 cut(s) 55, 196, 335, 582, 934, 1005
NlaIII CATG 8 cut(s) 113, 178, 236, 752, 785, 902, 915, 977
NlaIV GGNNCC 1 cut(s) 57
NmeAIII GCCGAG 1 cut(s) 138
NmuCI GTSAC 1 cut(s) 207
NspI RCATGY 2 cut(s) 113, 915
PaeI GCATGC 1 cut(s) 915
PaeR7I CTCGAG 1 cut(s) 116
PagI TCATGA 2 cut(s) 232, 973
PciI ACATGT 1 cut(s) 109
PciSI GCTCTTC 1 cut(s) 145
PctI GAATGC 1 cut(s) 297
PfeI GAWTC 3 cut(s) 73, 785, 984
PfoI TCCNGGA 2 cut(s) 685, 843
PkrI GCNGC 4 cut(s) 443, 560, 885, 910
PleI GAGTC 2 cut(s) 214, 251
PpsI GAGTC 2 cut(s) 214, 251
PscI ACATGT 1 cut(s) 109
PsiI TTATAA 1 cut(s) 411
Psp6I CCWGG 3 cut(s) 27, 685, 843
PspGI CCWGG 3 cut(s) 27, 685, 843
PspN4I GGNNCC 1 cut(s) 57
PspPI GGNCC 1 cut(s) 1100
PspXI VCTCGAGB 1 cut(s) 116
PsuI RGATCY 2 cut(s) 55, 934
RsaI GTAC 3 cut(s) 114, 680, 867
RsaNI GTAC 3 cut(s) 113, 679, 866
SapI GCTCTTC 1 cut(s) 145
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 4 cut(s) 442, 559, 884, 909
Sau3AI GATC 6 cut(s) 55, 196, 335, 582, 934, 1005
Sau96I GGNCC 1 cut(s) 1100
SchI GAGTC 2 cut(s) 215, 251
ScrFI CCNGG 3 cut(s) 29, 687, 845
SduI GDGCHC 1 cut(s) 157
SexAI ACCWGGT 1 cut(s) 27
Sfr274I CTCGAG 1 cut(s) 116
SlaI CTCGAG 1 cut(s) 116
SmlI CTYRAG 2 cut(s) 116, 791
SmoI CTYRAG 2 cut(s) 116, 791
SphI GCATGC 1 cut(s) 915
Sse9I AATT 6 cut(s) 378, 647, 657, 741, 770, 869
SsiI CCGC 2 cut(s) 863, 981
SspI AATATT 2 cut(s) 283, 994
SspMI CTAG 1 cut(s) 921
StyD4I CCNGG 3 cut(s) 27, 685, 843
TaaI ACNGT 4 cut(s) 213, 302, 394, 683
TaqI TCGA 1 cut(s) 117
TasI AATT 6 cut(s) 378, 647, 657, 741, 770, 869
TatI WGTACW 1 cut(s) 112
TfiI GAWTC 3 cut(s) 73, 785, 984
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 1 cut(s) 1015
TseFI GTSAC 1 cut(s) 207
TseI GCWGC 4 cut(s) 441, 558, 883, 908
Tsp45I GTSAC 1 cut(s) 207
TspDTI ATGAA 7 cut(s) 205, 221, 249, 582, 669, 798, 887
TspRI CASTG 1 cut(s) 1015
XagI CCTNNNNNAGG 1 cut(s) 834
XapI RAATTY 3 cut(s) 657, 741, 770
XbaI TCTAGA 1 cut(s) 920
XceI RCATGY 2 cut(s) 113, 915
XhoI CTCGAG 1 cut(s) 116
XspI CTAG 1 cut(s) 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.