pycom06g13390

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
18414267 .. 18416007
1741 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g13390.6

Sequence Viewer

Length: 747 bp
ATGGAGTTCTTACCTCTAAGGTTGAGGATTGTACAAGGGATGTGTGCCATTGCTTTTATTATTGCCTCTTTGTCACAAGCTGAGGTGAATGCTGAGAGCAAGTTTCAGCCATTGCAAAATGCATCAAACCCTCAAGAACTAAAAGTGAAGAGGTCCGACTTCCCTATTGATTTTGTGTTCGGAGTGACTACTGCTGCTGCACAAATGGAAGGATCTGCAAAAGAAGCAGGAAGAGGACCAAGTGTCTGGGACTACTACATTGAGAAATTCCCAGGGCGGATTGTAGACCACACGAACATGTTTACCGCCATCGACTCATACAAGCGATACAAGGAAGAAGTGAAGAATCTCAAGGACCTTGGAGTTGATTCTCACAGATTTTCCATCTCTTGGACCAGGATTCTTCCTAAGGGAACCTTGAGTGGTGGAGTAAACCAAGAGGGTATCAATCACTACAACAACTTCATCAACGAACTAATCAAGAATGACATCACACCATTTGTGACCATAATGCACTTTGATCCACCGCAAGCTTTGACAGACAAGTATGGCGGCATCCTCAATCGCTCCTTCGTGAAAGATTTCAAGGATTACAGTGAACTTTGTTTTAAACTTTTTGGAGATAGGGTGAAAAATTGGTTTACAATCAACGAGCCGTGGATCATGGCGAAAATGGGGTACGACAAAGGTGTTGGTGCCAGGCAGGTGTTCTGTTCAAACTGTATTTCCATGCAAAAATGGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

249

Amino Acids

28.38

Weight (kDa)

8.57

Isoelectric Point (pI)

31.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 694
Acc36I ACCTGC 1 cut(s) 694
AccB1I GGYRCC 1 cut(s) 695
AccB7I CCANNNNNTGG 1 cut(s) 390
AccI GTMKAC 1 cut(s) 285
AciI CCGC 4 cut(s) 277, 306, 527, 552
AclWI GGATC 3 cut(s) 220, 515, 668
AcsI RAATTY 1 cut(s) 266
AfaI GTAC 2 cut(s) 33, 680
AfiI CCNNNNNNNGG 1 cut(s) 390
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 2 cut(s) 586, 717
AhdI GACNNNNNGTC 1 cut(s) 242
AjnI CCWGG 3 cut(s) 271, 395, 698
AluBI AGCT 2 cut(s) 80, 533
AluI AGCT 2 cut(s) 80, 533
AlwI GGATC 3 cut(s) 220, 515, 668
ApeKI GCWGC 2 cut(s) 194, 197
ApoI RAATTY 1 cut(s) 266
Asp700I GAANNNNTTC 1 cut(s) 581
AspS9I GGNCC 4 cut(s) 153, 236, 355, 393
AsuHPI GGTGA 2 cut(s) 97, 640
AvaII GGWCC 4 cut(s) 153, 236, 355, 393
AxyI CCTNAGG 1 cut(s) 408
BanI GGYRCC 1 cut(s) 695
BbvCI CCTCAGC 1 cut(s) 81
BbvI GCAGC 2 cut(s) 181, 184
BccI CCATC 2 cut(s) 317, 392
BceAI ACGGC 1 cut(s) 640
BciT130I CCWGG 3 cut(s) 273, 397, 700
BfuAI ACCTGC 1 cut(s) 694
BisI GCNGC 3 cut(s) 195, 198, 553
BlsI GCNGC 3 cut(s) 196, 199, 554
Bme1390I CCNGG 3 cut(s) 273, 397, 700
Bme18I GGWCC 4 cut(s) 153, 236, 355, 393
BmeRI GACNNNNNGTC 1 cut(s) 242
BmgT120I GGNCC 4 cut(s) 153, 236, 355, 393
BmiI GGNNCC 2 cut(s) 415, 697
BmrFI CCNGG 3 cut(s) 273, 397, 700
BmsI GCATC 2 cut(s) 131, 564
Bpu10I CCTNAGC 1 cut(s) 81
BpuEI CTTGAG 3 cut(s) 117, 335, 439
BsaJI CCNNGG 4 cut(s) 271, 272, 358, 656
BsaXI ACNNNNNCTCC 2 cut(s) 612, 642
Bsc4I CCNNNNNNNGG 1 cut(s) 390
Bse21I CCTNAGG 1 cut(s) 408
Bse3DI GCAATG 2 cut(s) 48, 110
BseBI CCWGG 3 cut(s) 273, 397, 700
BseDI CCNNGG 4 cut(s) 271, 272, 358, 656
BseGI GGATG 2 cut(s) 45, 555
BseLI CCNNNNNNNGG 1 cut(s) 390
BseMI GCAATG 2 cut(s) 48, 110
BseMII CTCAG 2 cut(s) 72, 84
BseXI GCAGC 2 cut(s) 181, 184
BsgI GTGCAG 1 cut(s) 183
BshNI GGYRCC 1 cut(s) 695
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 1 cut(s) 390
BsmFI GGGAC 1 cut(s) 263
BsmI GAATGC 1 cut(s) 94
Bsp1407I TGTACA 1 cut(s) 31
Bsp143I GATC 3 cut(s) 212, 520, 660
BspACI CCGC 4 cut(s) 277, 306, 527, 552
BspCNI CTCAG 2 cut(s) 73, 85
BspLI GGNNCC 2 cut(s) 415, 697
BspMI ACCTGC 1 cut(s) 694
BspPI GGATC 3 cut(s) 220, 515, 668
BspT107I GGYRCC 1 cut(s) 695
BsrDI GCAATG 2 cut(s) 48, 110
BsrGI TGTACA 1 cut(s) 31
BssECI CCNNGG 4 cut(s) 271, 272, 358, 656
BssMI GATC 3 cut(s) 212, 520, 660
BssT1I CCWWGG 1 cut(s) 358
Bst2UI CCWGG 3 cut(s) 273, 397, 700
Bst4CI ACNGT 2 cut(s) 596, 722
Bst6I CTCTTC 2 cut(s) 143, 226
BstAUI TGTACA 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 531
BstDEI CTNAG 4 cut(s) 17, 81, 93, 408
BstDSI CCRYGG 1 cut(s) 656
BstF5I GGATG 2 cut(s) 45, 555
BstKTI GATC 3 cut(s) 215, 523, 663
BstMBI GATC 3 cut(s) 212, 520, 660
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstNI CCWGG 3 cut(s) 273, 397, 700
BstNSI RCATGY 1 cut(s) 301
BstSCI CCNGG 3 cut(s) 271, 395, 698
BstV1I GCAGC 2 cut(s) 181, 184
BstX2I RGATCY 1 cut(s) 212
BstXI CCANNNNNNTGG 1 cut(s) 246
BstYI RGATCY 1 cut(s) 212
Bsu36I CCTNAGG 1 cut(s) 408
BtgI CCRYGG 1 cut(s) 656
BtsCI GGATG 2 cut(s) 45, 555
BtsIMutI CAGTG 1 cut(s) 601
BveI ACCTGC 1 cut(s) 694
Cac8I GCNNGC 1 cut(s) 531
Cfr13I GGNCC 4 cut(s) 153, 236, 355, 393
Csp6I GTAC 2 cut(s) 32, 679
CspCI CAANNNNNGTGG 1 cut(s) 722
CviAII CATG 3 cut(s) 298, 664, 730
CviJI RGCY 4 cut(s) 80, 109, 533, 655
CviKI_1 RGCY 4 cut(s) 80, 109, 533, 655
CviQI GTAC 2 cut(s) 32, 679
DdeI CTNAG 4 cut(s) 17, 81, 93, 408
DpnI GATC 3 cut(s) 214, 522, 662
DpnII GATC 3 cut(s) 212, 520, 660
DraI TTTAAA 1 cut(s) 610
DriI GACNNNNNGTC 1 cut(s) 242
Eam1104I CTCTTC 2 cut(s) 143, 226
Eam1105I GACNNNNNGTC 1 cut(s) 242
EarI CTCTTC 2 cut(s) 143, 226
EciI GGCGGA 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 358
Eco47I GGWCC 4 cut(s) 153, 236, 355, 393
Eco81I CCTNAGG 1 cut(s) 408
EcoO109I RGGNCCY 1 cut(s) 355
EcoRII CCWGG 3 cut(s) 271, 395, 698
EcoT14I CCWWGG 1 cut(s) 358
EcoT22I ATGCAT 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 358
FaeI CATG 3 cut(s) 301, 667, 733
FaiI YATR 6 cut(s) 299, 319, 509, 549, 665, 731
FalI AAGNNNNNCTT 2 cut(s) 401, 433
FaqI GGGAC 1 cut(s) 263
FatI CATG 3 cut(s) 297, 663, 729
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 3 cut(s) 195, 198, 553
FokI GGATG 2 cut(s) 52, 542
Fsp4HI GCNGC 3 cut(s) 195, 198, 553
GluI GCNGC 3 cut(s) 195, 198, 553
Hin1II CATG 3 cut(s) 301, 667, 733
HindIII AAGCTT 1 cut(s) 531
HinfI GANTC 4 cut(s) 314, 346, 368, 400
HphI GGTGA 2 cut(s) 97, 640
Hpy166II GTNNAC 5 cut(s) 286, 303, 433, 599, 642
Hpy188I TCNGA 2 cut(s) 157, 182
Hpy188III TCNNGA 3 cut(s) 134, 481, 574
Hpy8I GTNNAC 5 cut(s) 286, 303, 433, 599, 642
HpyAV CCTTC 2 cut(s) 203, 580
HpyCH4III ACNGT 2 cut(s) 596, 722
HpyCH4V TGCA 6 cut(s) 115, 122, 200, 218, 514, 733
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 4 cut(s) 17, 81, 93, 408
Hsp92II CATG 3 cut(s) 301, 667, 733
Kzo9I GATC 3 cut(s) 212, 520, 660
LmnI GCTCC 1 cut(s) 572
LpnPI CCDG 9 cut(s) 213, 232, 258, 285, 382, 409, 685, 689, 712
Lsp1109I GCAGC 2 cut(s) 181, 184
LweI GCATC 2 cut(s) 131, 564
MaeIII GTNAC 3 cut(s) 72, 184, 502
MalI GATC 3 cut(s) 214, 522, 662
MboI GATC 3 cut(s) 212, 520, 660
MboII GAAGA 5 cut(s) 160, 243, 347, 355, 395
MflI RGATCY 1 cut(s) 212
MluCI AATT 2 cut(s) 266, 634
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 9 cut(s) 18, 24, 76, 76, 141, 144, 227, 433, 569
Mph1103I ATGCAT 1 cut(s) 124
MroXI GAANNNNTTC 1 cut(s) 581
MseI TTAA 1 cut(s) 609
MslI CAYNNNNRTG 1 cut(s) 296
MspR9I CCNGG 3 cut(s) 273, 397, 700
Mva1269I GAATGC 1 cut(s) 94
MvaI CCWGG 3 cut(s) 273, 397, 700
MwoI GCNNNNNNNGC 1 cut(s) 224
NdeII GATC 3 cut(s) 212, 520, 660
NlaIII CATG 3 cut(s) 301, 667, 733
NlaIV GGNNCC 2 cut(s) 415, 697
NmuCI GTSAC 3 cut(s) 72, 184, 502
NsiI ATGCAT 1 cut(s) 124
NspI RCATGY 1 cut(s) 301
PaqCI CACCTGC 1 cut(s) 694
PasI CCCWGGG 1 cut(s) 272
PciI ACATGT 1 cut(s) 297
PctI GAATGC 1 cut(s) 94
PdmI GAANNNNTTC 1 cut(s) 581
PfeI GAWTC 3 cut(s) 346, 368, 400
PflMI CCANNNNNTGG 1 cut(s) 390
PkrI GCNGC 3 cut(s) 196, 199, 554
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
PpuMI RGGWCCY 1 cut(s) 355
PscI ACATGT 1 cut(s) 297
Psp5II RGGWCCY 1 cut(s) 355
Psp6I CCWGG 3 cut(s) 271, 395, 698
PspGI CCWGG 3 cut(s) 271, 395, 698
PspN4I GGNNCC 2 cut(s) 415, 697
PspPI GGNCC 4 cut(s) 153, 236, 355, 393
PspPPI RGGWCCY 1 cut(s) 355
PsuI RGATCY 1 cut(s) 212
RsaI GTAC 2 cut(s) 33, 680
RsaNI GTAC 2 cut(s) 32, 679
RseI CAYNNNNRTG 1 cut(s) 296
SaqAI TTAA 1 cut(s) 609
SatI GCNGC 3 cut(s) 195, 198, 553
Sau3AI GATC 3 cut(s) 212, 520, 660
Sau96I GGNCC 4 cut(s) 153, 236, 355, 393
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 3 cut(s) 273, 397, 700
SfaNI GCATC 2 cut(s) 131, 564
SinI GGWCC 4 cut(s) 153, 236, 355, 393
SmiMI CAYNNNNRTG 1 cut(s) 296
SmlI CTYRAG 3 cut(s) 132, 350, 418
SmoI CTYRAG 3 cut(s) 132, 350, 418
Sse9I AATT 2 cut(s) 266, 634
SsiI CCGC 4 cut(s) 277, 306, 527, 552
StyD4I CCNGG 3 cut(s) 271, 395, 698
StyI CCWWGG 1 cut(s) 358
TaaI ACNGT 2 cut(s) 596, 722
TaqI TCGA 1 cut(s) 312
TasI AATT 2 cut(s) 266, 634
TatI WGTACW 1 cut(s) 31
TauI GCSGC 1 cut(s) 555
TfiI GAWTC 3 cut(s) 346, 368, 400
Tru1I TTAA 1 cut(s) 609
Tru9I TTAA 1 cut(s) 609
TscAI CASTG 1 cut(s) 601
TseFI GTSAC 3 cut(s) 72, 184, 502
TseI GCWGC 2 cut(s) 194, 197
Tsp45I GTSAC 3 cut(s) 72, 184, 502
TspDTI ATGAA 1 cut(s) 454
TspRI CASTG 1 cut(s) 601
Van91I CCANNNNNTGG 1 cut(s) 390
VpaK11BI GGWCC 4 cut(s) 153, 236, 355, 393
XapI RAATTY 1 cut(s) 266
XceI RCATGY 1 cut(s) 301
XmiI GTMKAC 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 581
Zsp2I ATGCAT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.