Rroxscaffold_3G00264450

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000392
Physical Location & Seq
Forward (+)
58104596 .. 58106194
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00264450.1

Sequence Viewer

Length: 990 bp
ATGGGTTTGCATTTGCTTGGTAGAGTTCGGAACTTATCTGTTTCCTATTCAAGCATCCACCCTTTTGTGACACTGTTACACTATGACTTGCCACAAGCCTTGCAAAAGAAGCACGGAGGCTACTTAAGTCGCACATTTGTGAATGATTTTCAAGAATATAGCGAACTTTGCTTCAAAACATTTGGAGACAGATTTAAACATTGGTTCACAATAAATGATCCAATTATTCATGCAACTTTCGGGCATGAACTTGGGATCGCTCCACCAGGGAGGTGTTTATTCACTGCCAGACCATGTACATCGGGTGGTAATTCATTCACAGAACCTTACATTGTAGCTCAAAACCTTATTCTTGCTCACGCCTCCGCGGTTAAGCTCTACCGAGAAAAATACCAGGCACAACAAAATGGTGAGATTGGGATGGTCCTTGGTACCTATTATTATAAGCCCTATTCAGAATCACCGGAAGCTAAAGCTGCTACACAAAGACTTATTGATTTCCAGCTAGGATGGTTTATGGAACCATTTGTGTATGGAGAATATCCAAAAAGTATGAAAGAGTTGGTGAAGGAAAGGCTGTCTACTTTTTCTGCAGAAAAGACTTTGATCAAGGGAAGTTATGATTTTGTTGGAATCAATTACCATAAATCATTTTATGGTAAAAATAAGCAGTTATCTCCAACTGAAGTGCCGCGCTATTCTCTGGATGTAGCAGCTGATAAATTAGAGGTGAACAATGGGGTTGCTCTTGGCCTGGACCTTGGACATTGGCCAGAAGGGCTGGAGAAACTGATGCTGTATATAAAGCAAAATTATCAAAACCCAAAAATCTACATCACTGAAAATGGAACTCCTGAGCTAAGGAATGACAACGTTCCACTAGCTGAACGACCAAACGACCCATATCGACTCTCCTATGTGCTTCGCCATTTATATCATCTCAATAAGGCAATTAAGAGTGAAGTAAACATCAAAGGGCCGGGTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

329

Amino Acids

37.58

Weight (kDa)

8.82

Isoelectric Point (pI)

34.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 17 - 326 1.8e-70 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 444
Acc65I GGTACC 1 cut(s) 431
AccB1I GGYRCC 1 cut(s) 431
AccI GTMKAC 1 cut(s) 581
AccII CGCG 2 cut(s) 368, 694
AciI CCGC 3 cut(s) 366, 368, 692
AclI AACGTT 1 cut(s) 873
AclWI GGATC 2 cut(s) 212, 263
AcoI YGGCCR 1 cut(s) 770
AcuI CTGAAG 1 cut(s) 705
AfaI GTAC 3 cut(s) 298, 433, 985
AflII CTTAAG 1 cut(s) 124
AgsI TTSAA 3 cut(s) 51, 152, 175
AjnI CCWGG 3 cut(s) 265, 393, 753
AleI CACNNNNGTG 1 cut(s) 137
AluBI AGCT 8 cut(s) 338, 376, 470, 476, 505, 716, 859, 884
AluI AGCT 8 cut(s) 338, 376, 470, 476, 505, 716, 859, 884
Alw26I GTCTC 1 cut(s) 180
AlwI GGATC 2 cut(s) 212, 263
AoxI GGCC 3 cut(s) 751, 770, 977
ApeKI GCWGC 2 cut(s) 476, 713
Asp718I GGTACC 1 cut(s) 431
AspLEI GCGC 1 cut(s) 696
AspS9I GGNCC 3 cut(s) 424, 757, 977
AsuC2I CCSGG 1 cut(s) 981
AsuHPI GGTGA 4 cut(s) 422, 453, 577, 742
AvaII GGWCC 2 cut(s) 424, 757
BalI TGGCCA 1 cut(s) 772
BanI GGYRCC 1 cut(s) 431
BbvI GCAGC 2 cut(s) 463, 725
BccI CCATC 2 cut(s) 415, 504
BciT130I CCWGG 3 cut(s) 267, 395, 755
BclI TGATCA 1 cut(s) 606
BcnI CCSGG 1 cut(s) 981
BcoDI GTCTC 1 cut(s) 180
BfaI CTAG 2 cut(s) 506, 881
BfmI CTRYAG 1 cut(s) 591
BfrI CTTAAG 1 cut(s) 124
BglI GCCNNNNNGGC 1 cut(s) 778
BisI GCNGC 3 cut(s) 477, 692, 714
BlsI GCNGC 3 cut(s) 478, 693, 715
Bme1390I CCNGG 4 cut(s) 267, 395, 755, 981
Bme18I GGWCC 2 cut(s) 424, 757
BmgT120I GGNCC 3 cut(s) 424, 757, 977
BmiI GGNNCC 2 cut(s) 433, 522
BmrFI CCNGG 4 cut(s) 267, 395, 755, 981
BmsI GCATC 2 cut(s) 63, 783
BpmI CTGGAG 1 cut(s) 803
Bpu10I CCTNAGC 2 cut(s) 855, 860
BpuMI CCSGG 1 cut(s) 981
BsaJI CCNNGG 4 cut(s) 266, 366, 427, 760
BsaWI WCCGGW 1 cut(s) 463
BseBI CCWGG 3 cut(s) 267, 395, 755
BseDI CCNNGG 4 cut(s) 266, 366, 427, 760
BseGI GGATG 4 cut(s) 54, 426, 515, 712
BseMII CTCAG 1 cut(s) 846
BseXI GCAGC 2 cut(s) 463, 725
Bsh1236I CGCG 2 cut(s) 368, 694
BshFI GGCC 3 cut(s) 753, 772, 979
BshNI GGYRCC 1 cut(s) 431
BsiSI CCGG 2 cut(s) 464, 980
BsmAI GTCTC 1 cut(s) 180
BsnI GGCC 3 cut(s) 753, 772, 979
Bsp1407I TGTACA 1 cut(s) 296
Bsp143I GATC 3 cut(s) 217, 255, 606
BspACI CCGC 3 cut(s) 366, 368, 692
BspANI GGCC 3 cut(s) 753, 772, 979
BspCNI CTCAG 1 cut(s) 847
BspFNI CGCG 2 cut(s) 368, 694
BspLI GGNNCC 2 cut(s) 433, 522
BspMAI CTGCAG 1 cut(s) 595
BspPI GGATC 2 cut(s) 212, 263
BspT107I GGYRCC 1 cut(s) 431
BspTI CTTAAG 1 cut(s) 124
BsrGI TGTACA 1 cut(s) 296
BssECI CCNNGG 4 cut(s) 266, 366, 427, 760
BssMI GATC 3 cut(s) 217, 255, 606
BssT1I CCWWGG 2 cut(s) 427, 760
Bst2UI CCWGG 3 cut(s) 267, 395, 755
Bst4CI ACNGT 1 cut(s) 75
BstAFI CTTAAG 1 cut(s) 124
BstAUI TGTACA 1 cut(s) 296
BstDEI CTNAG 3 cut(s) 855, 860, 987
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 4 cut(s) 54, 426, 515, 712
BstFNI CGCG 2 cut(s) 368, 694
BstHHI GCGC 1 cut(s) 696
BstKTI GATC 3 cut(s) 220, 258, 609
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 3 cut(s) 217, 255, 606
BstMWI GCNNNNNNNGC 4 cut(s) 109, 168, 476, 778
BstNI CCWGG 3 cut(s) 267, 395, 755
BstSCI CCNGG 4 cut(s) 265, 393, 753, 979
BstSFI CTRYAG 1 cut(s) 591
BstUI CGCG 2 cut(s) 368, 694
BstV1I GCAGC 2 cut(s) 463, 725
BsuRI GGCC 3 cut(s) 753, 772, 979
BtgI CCRYGG 1 cut(s) 366
BtsCI GGATG 4 cut(s) 54, 426, 515, 712
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 3 cut(s) 71, 282, 837
CfoI GCGC 1 cut(s) 696
Cfr13I GGNCC 3 cut(s) 424, 757, 977
Cfr42I CCGCGG 1 cut(s) 369
Csp6I GTAC 3 cut(s) 297, 432, 984
CspCI CAANNNNNGTGG 2 cut(s) 81, 116
CviAII CATG 3 cut(s) 230, 245, 294
CviQI GTAC 3 cut(s) 297, 432, 984
DdeI CTNAG 3 cut(s) 855, 860, 987
DpnI GATC 3 cut(s) 219, 257, 608
DpnII GATC 3 cut(s) 217, 255, 606
DraI TTTAAA 1 cut(s) 196
EaeI YGGCCR 1 cut(s) 770
Eco130I CCWWGG 2 cut(s) 427, 760
Eco47I GGWCC 2 cut(s) 424, 757
Eco57I CTGAAG 1 cut(s) 705
EcoRII CCWGG 3 cut(s) 265, 393, 753
EcoT14I CCWWGG 2 cut(s) 427, 760
ErhI CCWWGG 2 cut(s) 427, 760
FaeI CATG 3 cut(s) 233, 248, 297
FatI CATG 3 cut(s) 229, 244, 293
FbaI TGATCA 1 cut(s) 606
FblI GTMKAC 1 cut(s) 581
Fnu4HI GCNGC 3 cut(s) 477, 692, 714
FokI GGATG 4 cut(s) 41, 433, 522, 719
Fsp4HI GCNGC 3 cut(s) 477, 692, 714
FspBI CTAG 2 cut(s) 506, 881
GlaI GCGC 1 cut(s) 695
GluI GCNGC 3 cut(s) 477, 692, 714
GsuI CTGGAG 1 cut(s) 803
HaeIII GGCC 3 cut(s) 753, 772, 979
HapII CCGG 2 cut(s) 464, 980
HhaI GCGC 1 cut(s) 696
Hin1II CATG 3 cut(s) 233, 248, 297
Hin6I GCGC 1 cut(s) 694
HinP1I GCGC 1 cut(s) 694
HinfI GANTC 3 cut(s) 458, 633, 909
HpaII CCGG 2 cut(s) 464, 980
HphI GGTGA 4 cut(s) 422, 453, 577, 742
Hpy166II GTNNAC 4 cut(s) 207, 582, 733, 967
Hpy188I TCNGA 2 cut(s) 30, 457
Hpy188III TCNNGA 3 cut(s) 152, 704, 854
Hpy8I GTNNAC 4 cut(s) 207, 582, 733, 967
HpyAV CCTTC 2 cut(s) 562, 770
HpyCH4III ACNGT 1 cut(s) 75
HpyCH4IV ACGT 1 cut(s) 873
HpyCH4V TGCA 4 cut(s) 10, 103, 233, 593
HpyF10VI GCNNNNNNNGC 4 cut(s) 109, 168, 476, 778
HpyF3I CTNAG 3 cut(s) 855, 860, 987
HpySE526I ACGT 1 cut(s) 873
Hsp92II CATG 3 cut(s) 233, 248, 297
HspAI GCGC 1 cut(s) 694
KpnI GGTACC 1 cut(s) 435
Ksp22I TGATCA 1 cut(s) 606
KspI CCGCGG 1 cut(s) 369
Kzo9I GATC 3 cut(s) 217, 255, 606
LmnI GCTCC 1 cut(s) 265
Lsp1109I GCAGC 2 cut(s) 463, 725
LweI GCATC 2 cut(s) 63, 783
MaeI CTAG 2 cut(s) 506, 881
MaeII ACGT 1 cut(s) 873
MaeIII GTNAC 2 cut(s) 67, 75
MalI GATC 3 cut(s) 219, 257, 608
MboI GATC 3 cut(s) 217, 255, 606
MlsI TGGCCA 1 cut(s) 772
MluCI AATT 6 cut(s) 222, 310, 637, 722, 811, 951
MluNI TGGCCA 1 cut(s) 772
MlyI GAGTC 1 cut(s) 903
MmeI TCCRAC 2 cut(s) 610, 704
MnlI CCTC 4 cut(s) 110, 264, 373, 721
Mox20I TGGCCA 1 cut(s) 772
MscI TGGCCA 1 cut(s) 772
MseI TTAA 4 cut(s) 125, 195, 372, 954
MslI CAYNNNNRTG 1 cut(s) 137
Msp20I TGGCCA 1 cut(s) 772
MspA1I CMGCKG 2 cut(s) 368, 716
MspCI CTTAAG 1 cut(s) 124
MspI CCGG 2 cut(s) 464, 980
MspR9I CCNGG 4 cut(s) 267, 395, 755, 981
MvaI CCWGG 3 cut(s) 267, 395, 755
MvnI CGCG 2 cut(s) 368, 694
MwoI GCNNNNNNNGC 4 cut(s) 109, 168, 476, 778
NciI CCSGG 1 cut(s) 981
NdeII GATC 3 cut(s) 217, 255, 606
NlaIII CATG 3 cut(s) 233, 248, 297
NlaIV GGNNCC 2 cut(s) 433, 522
NmuCI GTSAC 1 cut(s) 67
OliI CACNNNNGTG 1 cut(s) 137
PfeI GAWTC 2 cut(s) 458, 633
PkrI GCNGC 3 cut(s) 478, 693, 715
PleI GAGTC 1 cut(s) 903
PpsI GAGTC 1 cut(s) 903
PsiI TTATAA 1 cut(s) 444
Psp1406I AACGTT 1 cut(s) 873
Psp6I CCWGG 3 cut(s) 265, 393, 753
PspGI CCWGG 3 cut(s) 265, 393, 753
PspN4I GGNNCC 2 cut(s) 433, 522
PspPI GGNCC 3 cut(s) 424, 757, 977
PstI CTGCAG 1 cut(s) 595
PvuII CAGCTG 1 cut(s) 716
RsaI GTAC 3 cut(s) 298, 433, 985
RsaNI GTAC 3 cut(s) 297, 432, 984
RseI CAYNNNNRTG 1 cut(s) 137
SacII CCGCGG 1 cut(s) 369
SaqAI TTAA 4 cut(s) 125, 195, 372, 954
SatI GCNGC 3 cut(s) 477, 692, 714
Sau3AI GATC 3 cut(s) 217, 255, 606
Sau96I GGNCC 3 cut(s) 424, 757, 977
SchI GAGTC 1 cut(s) 903
ScrFI CCNGG 4 cut(s) 267, 395, 755, 981
SfaNI GCATC 2 cut(s) 63, 783
SfcI CTRYAG 1 cut(s) 591
Sfr303I CCGCGG 1 cut(s) 369
SgrBI CCGCGG 1 cut(s) 369
SinI GGWCC 2 cut(s) 424, 757
SmiMI CAYNNNNRTG 1 cut(s) 137
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 6 cut(s) 222, 310, 637, 722, 811, 951
SsiI CCGC 3 cut(s) 366, 368, 692
SspMI CTAG 2 cut(s) 506, 881
StyD4I CCNGG 4 cut(s) 265, 393, 753, 979
StyI CCWWGG 2 cut(s) 427, 760
TaaI ACNGT 1 cut(s) 75
TaiI ACGT 1 cut(s) 876
TaqI TCGA 1 cut(s) 907
TasI AATT 6 cut(s) 222, 310, 637, 722, 811, 951
TatI WGTACW 1 cut(s) 296
TauI GCSGC 1 cut(s) 694
TfiI GAWTC 2 cut(s) 458, 633
Tru1I TTAA 4 cut(s) 125, 195, 372, 954
Tru9I TTAA 4 cut(s) 125, 195, 372, 954
TscAI CASTG 3 cut(s) 78, 289, 844
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 2 cut(s) 476, 713
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 4 cut(s) 218, 261, 303, 569
TspGWI ACGGA 1 cut(s) 129
TspRI CASTG 3 cut(s) 78, 289, 844
Vha464I CTTAAG 1 cut(s) 124
VpaK11BI GGWCC 2 cut(s) 424, 757
XmiI GTMKAC 1 cut(s) 581
XspI CTAG 2 cut(s) 506, 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.