Rorug06G0506000

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000392
Physical Location & Seq
Reverse (-)
62147546 .. 62148666
1121 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0506000.1

Sequence Viewer

Length: 855 bp
ATGGAGACGAATAAAGCTAAAGCCTCTATCTCCTTCTTCCTTCTCATGATGTTGTTAATAAGCTCTTGTTCGGCTTTCAACATCACCAAGCTCCTCGAAAAGGAAGACGATTTCAGCAACTTCAACCAGCAGCTCTCCCAGACCAAAATCGCCGACCAGATCAACAAGCGGAGCACCATCACCGTCCTCGCCGTGGACAACAGCGCAATAGGCGGCCTAGGTGACGACAGCTCCGTAACGAAGGCGATCATGAGCGTCCACGTCATCCTCGACTACTACGACAAGGAGAAGCTGACCAAGCATGCAAAGACCAACAAGAGCGCCATGCTGACGACGCTGTACCAGACCTCCGGGTTGGCTAAGAACCAACAGGGCTTCCTCCGAGTAGCAGCCGACGACGGTGAGATTACTTTCGGGTCGGCAAGCAAGGGTGGACAAATGAACTCCAAGCTGGTCAAGTCTGTGACAGCTCAGCCCTTCAACATTTCCGTGCTTCAGGTTAGTTCCATCATAGAGGTTCCCGACATTAATGCTAATCCTTCCCCCGAAAAGGCTCCTGCACCGAAGAGGGGGAAGCCTCCGAGTTCGTCCGACGACGCCGACAGTCCCTCCGACGACGACGCTGACAGTCCCTCCGACGACACAGCCGACAGTCCCGGGGACGACTCGGACTCTGAGGCTCCCAGTCCGTCGAAGCACCATACACCACCCAAGCCTAAGGATGATACGTCAGATTCGCCATCGTCGAGTCCAGCGCCTGCGCCAGGTAAGAGTGATGCACGCGCCACCGCTGCGGAGATGGGCGTTGGGGTTGTTGCTATGGGGTTAGTTTCGGTGTTAGTTGCCTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

284

Amino Acids

29.86

Weight (kDa)

4.86

Isoelectric Point (pI)

56.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 783
AciI CCGC 4 cut(s) 169, 213, 789, 794
AcuI CTGAAG 1 cut(s) 479
AcyI GRCGYC 1 cut(s) 597
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 5 cut(s) 100, 193, 550, 569, 764
AgsI TTSAA 3 cut(s) 79, 124, 481
AjiI CACGTC 1 cut(s) 262
AjnI CCWGG 1 cut(s) 763
AluBI AGCT 8 cut(s) 17, 63, 91, 133, 231, 292, 451, 470
AluI AGCT 8 cut(s) 17, 63, 91, 133, 231, 292, 451, 470
Alw21I GWGCWC 1 cut(s) 176
AlwNI CAGNNNCTG 1 cut(s) 758
Ama87I CYCGRG 1 cut(s) 656
AoxI GGCC 1 cut(s) 214
ApeKI GCWGC 3 cut(s) 130, 389, 791
AseI ATTAAT 1 cut(s) 528
AspA2I CCTAGG 1 cut(s) 217
AspLEI GCGC 5 cut(s) 206, 323, 757, 763, 785
AsuC2I CCSGG 3 cut(s) 352, 657, 658
AsuHPI GGTGA 4 cut(s) 76, 172, 233, 413
AvaI CYCGRG 1 cut(s) 656
AvrII CCTAGG 1 cut(s) 217
AxyI CCTNAGG 1 cut(s) 717
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 176
BbvI GCAGC 3 cut(s) 142, 401, 778
BccI CCATC 4 cut(s) 185, 515, 748, 793
BceAI ACGGC 1 cut(s) 176
BcgI CGANNNNNNTGC 2 cut(s) 512, 546
BciT130I CCWGG 1 cut(s) 765
BcnI CCSGG 3 cut(s) 352, 657, 658
BfaI CTAG 1 cut(s) 218
BfoI RGCGCY 2 cut(s) 324, 758
BisI GCNGC 4 cut(s) 131, 214, 390, 792
BlnI CCTAGG 1 cut(s) 217
BlpI GCTNAGC 1 cut(s) 471
BlsI GCNGC 4 cut(s) 132, 215, 391, 793
Bme1390I CCNGG 4 cut(s) 352, 657, 658, 765
BmeT110I CYCGRG 1 cut(s) 656
BmgBI CACGTC 1 cut(s) 262
BmiI GGNNCC 3 cut(s) 519, 555, 681
BmrFI CCNGG 4 cut(s) 352, 657, 658, 765
BmrI ACTGGG 1 cut(s) 678
BmsI GCATC 1 cut(s) 766
BmuI ACTGGG 1 cut(s) 678
BpiI GAAGAC 1 cut(s) 111
Bpu1102I GCTNAGC 1 cut(s) 471
BpuMI CCSGG 3 cut(s) 352, 657, 658
BsaHI GRCGYC 1 cut(s) 597
BsaJI CCNNGG 4 cut(s) 192, 217, 656, 657
BsaXI ACNNNNNCTCC 8 cut(s) 215, 245, 332, 362, 593, 617, 623, 647
Bsc4I CCNNNNNNNGG 5 cut(s) 100, 193, 550, 569, 764
Bse1I ACTGG 1 cut(s) 684
Bse21I CCTNAGG 1 cut(s) 717
BseBI CCWGG 1 cut(s) 765
BseDI CCNNGG 4 cut(s) 192, 217, 656, 657
BseGI GGATG 2 cut(s) 264, 727
BseLI CCNNNNNNNGG 5 cut(s) 100, 193, 550, 569, 764
BseMII CTCAG 2 cut(s) 485, 666
BseNI ACTGG 1 cut(s) 684
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 3 cut(s) 142, 401, 778
BsgI GTGCAG 1 cut(s) 543
Bsh1236I CGCG 1 cut(s) 783
BshFI GGCC 1 cut(s) 216
BsiHKAI GWGCWC 1 cut(s) 176
BsiHKCI CYCGRG 1 cut(s) 656
BsiSI CCGG 2 cut(s) 351, 657
BslFI GGGAC 4 cut(s) 591, 615, 639, 674
BslI CCNNNNNNNGG 5 cut(s) 100, 193, 550, 569, 764
BsmFI GGGAC 4 cut(s) 591, 615, 639, 674
BsnI GGCC 1 cut(s) 216
BsoBI CYCGRG 1 cut(s) 656
Bsp1286I GDGCHC 1 cut(s) 176
Bsp143I GATC 2 cut(s) 159, 246
Bsp1720I GCTNAGC 1 cut(s) 471
BspACI CCGC 4 cut(s) 169, 213, 789, 794
BspANI GGCC 1 cut(s) 216
BspCNI CTCAG 2 cut(s) 484, 667
BspFNI CGCG 1 cut(s) 783
BspHI TCATGA 2 cut(s) 45, 249
BspLI GGNNCC 3 cut(s) 519, 555, 681
BsrI ACTGG 1 cut(s) 684
BssECI CCNNGG 4 cut(s) 192, 217, 656, 657
BssMI GATC 2 cut(s) 159, 246
BssNI GRCGYC 1 cut(s) 597
BssT1I CCWWGG 1 cut(s) 217
Bst2UI CCWGG 1 cut(s) 765
Bst4CI ACNGT 5 cut(s) 184, 401, 605, 629, 653
Bst6I CTCTTC 1 cut(s) 560
BstACI GRCGYC 1 cut(s) 597
BstC8I GCNNGC 4 cut(s) 303, 424, 759, 781
BstDEI CTNAG 4 cut(s) 360, 471, 675, 717
BstDSI CCRYGG 1 cut(s) 192
BstENI CCTNNNNNAGG 2 cut(s) 98, 762
BstF5I GGATG 2 cut(s) 264, 727
BstFNI CGCG 1 cut(s) 783
BstH2I RGCGCY 2 cut(s) 324, 758
BstHHI GCGC 5 cut(s) 206, 323, 757, 763, 785
BstKTI GATC 2 cut(s) 162, 249
BstMBI GATC 2 cut(s) 159, 246
BstMWI GCNNNNNNNGC 4 cut(s) 210, 298, 334, 791
BstNI CCWGG 1 cut(s) 765
BstNSI RCATGY 1 cut(s) 305
BstSCI CCNGG 4 cut(s) 350, 655, 656, 763
BstUI CGCG 1 cut(s) 783
BstV1I GCAGC 3 cut(s) 142, 401, 778
BstV2I GAAGAC 1 cut(s) 111
Bsu36I CCTNAGG 1 cut(s) 717
BsuRI GGCC 1 cut(s) 216
BtgI CCRYGG 1 cut(s) 192
BtrI CACGTC 1 cut(s) 262
BtsCI GGATG 2 cut(s) 264, 727
Cac8I GCNNGC 4 cut(s) 303, 424, 759, 781
CaiI CAGNNNCTG 1 cut(s) 758
CciI TCATGA 2 cut(s) 45, 249
CfoI GCGC 5 cut(s) 206, 323, 757, 763, 785
Cfr9I CCCGGG 1 cut(s) 656
CseI GACGC 4 cut(s) 244, 343, 605, 629
Csp6I GTAC 1 cut(s) 340
CviAII CATG 4 cut(s) 46, 250, 302, 325
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 4 cut(s) 360, 471, 675, 717
DpnI GATC 2 cut(s) 161, 248
DpnII GATC 2 cut(s) 159, 246
Eam1104I CTCTTC 1 cut(s) 560
EarI CTCTTC 1 cut(s) 560
Eco130I CCWWGG 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 479
Eco81I CCTNAGG 1 cut(s) 717
Eco88I CYCGRG 1 cut(s) 656
EcoNI CCTNNNNNAGG 2 cut(s) 98, 762
EcoRII CCWGG 1 cut(s) 763
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 4 cut(s) 49, 253, 305, 328
FaiI YATR 7 cut(s) 47, 251, 303, 326, 512, 702, 821
FaqI GGGAC 4 cut(s) 591, 615, 639, 674
FatI CATG 4 cut(s) 45, 249, 301, 324
Fnu4HI GCNGC 4 cut(s) 131, 214, 390, 792
FokI GGATG 2 cut(s) 251, 734
Fsp4HI GCNGC 4 cut(s) 131, 214, 390, 792
FspBI CTAG 1 cut(s) 218
GlaI GCGC 5 cut(s) 205, 322, 756, 762, 784
GluI GCNGC 4 cut(s) 131, 214, 390, 792
HaeII RGCGCY 2 cut(s) 324, 758
HaeIII GGCC 1 cut(s) 216
HapII CCGG 2 cut(s) 351, 657
HgaI GACGC 4 cut(s) 244, 343, 605, 629
HhaI GCGC 5 cut(s) 206, 323, 757, 763, 785
Hin1I GRCGYC 1 cut(s) 597
Hin1II CATG 4 cut(s) 49, 253, 305, 328
Hin6I GCGC 5 cut(s) 204, 321, 755, 761, 783
HinP1I GCGC 5 cut(s) 204, 321, 755, 761, 783
HinfI GANTC 4 cut(s) 665, 671, 734, 748
HpaII CCGG 2 cut(s) 351, 657
HphI GGTGA 4 cut(s) 76, 172, 233, 413
Hpy166II GTNNAC 3 cut(s) 196, 259, 434
Hpy188I TCNGA 8 cut(s) 383, 582, 592, 613, 637, 670, 676, 733
Hpy188III TCNNGA 3 cut(s) 46, 250, 521
Hpy8I GTNNAC 3 cut(s) 196, 259, 434
HpyAV CCTTC 5 cut(s) 43, 50, 235, 487, 549
HpyCH4III ACNGT 5 cut(s) 184, 401, 605, 629, 653
HpyCH4IV ACGT 2 cut(s) 261, 728
HpyCH4V TGCA 3 cut(s) 305, 560, 779
HpyF10VI GCNNNNNNNGC 4 cut(s) 210, 298, 334, 791
HpyF3I CTNAG 4 cut(s) 360, 471, 675, 717
HpySE526I ACGT 2 cut(s) 261, 728
Hsp92I GRCGYC 1 cut(s) 597
Hsp92II CATG 4 cut(s) 49, 253, 305, 328
HspAI GCGC 5 cut(s) 204, 321, 755, 761, 783
Kzo9I GATC 2 cut(s) 159, 246
LmnI GCTCC 5 cut(s) 96, 171, 236, 559, 685
Lsp1109I GCAGC 3 cut(s) 142, 401, 778
LweI GCATC 1 cut(s) 766
MaeI CTAG 1 cut(s) 218
MaeII ACGT 2 cut(s) 261, 728
MaeIII GTNAC 3 cut(s) 221, 235, 463
MalI GATC 2 cut(s) 161, 248
MboI GATC 2 cut(s) 159, 246
MboII GAAGA 3 cut(s) 28, 116, 577
MhlI GDGCHC 1 cut(s) 176
MlyI GAGTC 3 cut(s) 659, 665, 757
MmeI TCCRAC 3 cut(s) 615, 636, 660
MseI TTAA 2 cut(s) 56, 528
MslI CAYNNNNRTG 1 cut(s) 488
MspA1I CMGCKG 1 cut(s) 791
MspI CCGG 2 cut(s) 351, 657
MspR9I CCNGG 4 cut(s) 352, 657, 658, 765
MvaI CCWGG 1 cut(s) 765
MvnI CGCG 1 cut(s) 783
MwoI GCNNNNNNNGC 4 cut(s) 210, 298, 334, 791
NciI CCSGG 3 cut(s) 352, 657, 658
NdeII GATC 2 cut(s) 159, 246
NlaIII CATG 4 cut(s) 49, 253, 305, 328
NlaIV GGNNCC 3 cut(s) 519, 555, 681
NmuCI GTSAC 2 cut(s) 221, 463
NspI RCATGY 1 cut(s) 305
PaeI GCATGC 1 cut(s) 305
PagI TCATGA 2 cut(s) 45, 249
PcsI WCGNNNNNNNCGW 5 cut(s) 231, 267, 276, 645, 743
PfeI GAWTC 1 cut(s) 734
PkrI GCNGC 4 cut(s) 132, 215, 391, 793
PleI GAGTC 3 cut(s) 659, 665, 756
PpsI GAGTC 3 cut(s) 659, 665, 756
PshBI ATTAAT 1 cut(s) 528
Psp6I CCWGG 1 cut(s) 763
PspGI CCWGG 1 cut(s) 763
PspN4I GGNNCC 3 cut(s) 519, 555, 681
PstNI CAGNNNCTG 1 cut(s) 758
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
RseI CAYNNNNRTG 1 cut(s) 488
SaqAI TTAA 2 cut(s) 56, 528
SatI GCNGC 4 cut(s) 131, 214, 390, 792
Sau3AI GATC 2 cut(s) 159, 246
SchI GAGTC 3 cut(s) 659, 665, 757
ScrFI CCNGG 4 cut(s) 352, 657, 658, 765
SduI GDGCHC 1 cut(s) 176
SfaNI GCATC 1 cut(s) 766
SmaI CCCGGG 1 cut(s) 658
SmiMI CAYNNNNRTG 1 cut(s) 488
SphI GCATGC 1 cut(s) 305
SsiI CCGC 4 cut(s) 169, 213, 789, 794
SspMI CTAG 1 cut(s) 218
StyD4I CCNGG 4 cut(s) 350, 655, 656, 763
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 5 cut(s) 184, 401, 605, 629, 653
TaiI ACGT 2 cut(s) 264, 731
TaqI TCGA 4 cut(s) 96, 270, 692, 746
TauI GCSGC 1 cut(s) 216
TfiI GAWTC 1 cut(s) 734
Tru1I TTAA 2 cut(s) 56, 528
Tru9I TTAA 2 cut(s) 56, 528
TseFI GTSAC 2 cut(s) 221, 463
TseI GCWGC 3 cut(s) 130, 389, 791
Tsp45I GTSAC 2 cut(s) 221, 463
TspDTI ATGAA 1 cut(s) 455
TspGWI ACGGA 3 cut(s) 223, 478, 678
TspMI CCCGGG 1 cut(s) 656
VspI ATTAAT 1 cut(s) 528
XagI CCTNNNNNAGG 2 cut(s) 98, 762
XceI RCATGY 1 cut(s) 305
XmaI CCCGGG 1 cut(s) 656
XmaJI CCTAGG 1 cut(s) 217
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.