Rorug05G0298500

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000392
Physical Location & Seq
Reverse (-)
34533066 .. 34535882
2817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0298500.1

Sequence Viewer

Length: 714 bp
ATGGATTCATCAAGAAAAGCCAAGTCCCAGTACCCAATTCAAGATCCACTCTTTCCAAGCCAGCATAGTCGAGAAAATGTAAGGAAACCTCTGGGAATTTATCATTGTGCAGTGGAGGGGAATGCTCTTAAGGCAATTGAACTGATAGAACAGCTGGCGAATGACTTACGGGAGAAAAATAAAGACTTGCATTTTGATCTTCTCAGCCTTCACTTTGTTGAACTTGGAACACGATCGGCTCTTTATTCTAATGACCGAGAGTCGATTACGGTTTCTGTGGAAGAAGTGACACCTAGATCTGTAGGTGCTCTTATAGCACTTTATGAGAGAGCGGTTGGGATTTATGCCTCACTTGTCAACATTAATGCTTACCATCAACCTGTCAATGTATATGGGTCGGATATAGTCATTTTTCAAATCTGCATGTTTTTCTTGGTGCTTACTTTGGACCTATCATTGCTTGGAAAGGATAGTTCAGATGAGTTGCTGCAAATGGTGCCACCTAAAAACTTAACACTATCTTTCTCATCGGAGAGTTCCGTTGAAGAACTTGAGAGAGAAAGCATTGCAGATGCTATTACAATATTGACTACATGGTTTCTTCATGATTCTTACAGCAGTTATGACTCGTGCAGGCTCAAGAATCTAACAGTTACCGGCACTATGTGGCTTCAACAACCGAACGAGATGGTGGGGCAAATGCAAGGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

237

Amino Acids

26.68

Weight (kDa)

5.05

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 496
AccBSI CCGCTC 1 cut(s) 332
AciI CCGC 1 cut(s) 332
AclWI GGATC 1 cut(s) 38
AcsI RAATTY 1 cut(s) 96
AdeI CACNNNGTG 1 cut(s) 666
AfaI GTAC 1 cut(s) 32
AflII CTTAAG 1 cut(s) 128
AgsI TTSAA 6 cut(s) 41, 140, 221, 416, 545, 674
AhdI GACNNNNNGTC 1 cut(s) 259
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw21I GWGCWC 1 cut(s) 310
AlwI GGATC 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 487
ApoI RAATTY 1 cut(s) 96
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
AseI ATTAAT 1 cut(s) 363
AspS9I GGNCC 1 cut(s) 448
AvaII GGWCC 1 cut(s) 448
BanI GGYRCC 1 cut(s) 496
BauI CACGAG 1 cut(s) 628
Bbv12I GWGCWC 1 cut(s) 310
BbvI GCAGC 1 cut(s) 474
BccI CCATC 2 cut(s) 381, 682
BfaI CTAG 1 cut(s) 294
BfmI CTRYAG 1 cut(s) 300
BfrI CTTAAG 1 cut(s) 128
BglII AGATCT 1 cut(s) 296
BisI GCNGC 1 cut(s) 488
BlsI GCNGC 1 cut(s) 489
Bme18I GGWCC 1 cut(s) 448
BmeRI GACNNNNNGTC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 448
BmiI GGNNCC 1 cut(s) 498
BmrI ACTGGG 1 cut(s) 22
BmsI GCATC 1 cut(s) 562
BmuI ACTGGG 1 cut(s) 22
BpuEI CTTGAG 2 cut(s) 572, 623
Bse118I RCCGGY 1 cut(s) 656
Bse1I ACTGG 1 cut(s) 28
Bse3DI GCAATG 2 cut(s) 455, 564
BseMI GCAATG 2 cut(s) 455, 564
BseMII CTCAG 1 cut(s) 217
BseNI ACTGG 1 cut(s) 28
BseXI GCAGC 1 cut(s) 474
BsgI GTGCAG 2 cut(s) 129, 652
Bsh1285I CGRYCG 1 cut(s) 236
BshNI GGYRCC 1 cut(s) 496
BsiEI CGRYCG 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 310
BsiSI CCGG 1 cut(s) 657
BslFI GGGAC 1 cut(s) 10
BsmFI GGGAC 1 cut(s) 10
BsmI GAATGC 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 310
Bsp143I GATC 4 cut(s) 43, 196, 233, 296
BspACI CCGC 1 cut(s) 332
BspCNI CTCAG 1 cut(s) 216
BspHI TCATGA 1 cut(s) 604
BspLI GGNNCC 1 cut(s) 498
BspPI GGATC 1 cut(s) 38
BspT107I GGYRCC 1 cut(s) 496
BspTI CTTAAG 1 cut(s) 128
BsrBI CCGCTC 1 cut(s) 332
BsrDI GCAATG 2 cut(s) 455, 564
BsrFI RCCGGY 1 cut(s) 656
BsrI ACTGG 1 cut(s) 28
BssAI RCCGGY 1 cut(s) 656
BssMI GATC 4 cut(s) 43, 196, 233, 296
BssSI CACGAG 1 cut(s) 628
Bst2BI CACGAG 1 cut(s) 628
Bst4CI ACNGT 2 cut(s) 271, 652
BstAFI CTTAAG 1 cut(s) 128
BstAPI GCANNNNNTGC 1 cut(s) 496
BstC8I GCNNGC 3 cut(s) 62, 156, 635
BstDEI CTNAG 1 cut(s) 203
BstKTI GATC 4 cut(s) 46, 199, 236, 299
BstMBI GATC 4 cut(s) 43, 196, 233, 296
BstMCI CGRYCG 1 cut(s) 236
BstMWI GCNNNNNNNGC 3 cut(s) 131, 314, 496
BstNSI RCATGY 1 cut(s) 427
BstSFI CTRYAG 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 474
BstX2I RGATCY 2 cut(s) 43, 296
BstYI RGATCY 2 cut(s) 43, 296
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 3 cut(s) 62, 156, 635
CciI TCATGA 1 cut(s) 604
Cfr10I RCCGGY 1 cut(s) 656
Cfr13I GGNCC 1 cut(s) 448
Csp6I GTAC 1 cut(s) 31
CviAII CATG 3 cut(s) 424, 594, 605
CviJI RGCY 7 cut(s) 20, 60, 154, 207, 239, 637, 670
CviKI_1 RGCY 7 cut(s) 20, 60, 154, 207, 239, 637, 670
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 1 cut(s) 203
DpnI GATC 4 cut(s) 45, 198, 235, 298
DpnII GATC 4 cut(s) 43, 196, 233, 296
DraIII CACNNNGTG 1 cut(s) 666
DriI GACNNNNNGTC 1 cut(s) 259
Eam1105I GACNNNNNGTC 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 448
FaeI CATG 3 cut(s) 427, 597, 608
FaqI GGGAC 1 cut(s) 10
FatI CATG 3 cut(s) 423, 593, 604
Fnu4HI GCNGC 1 cut(s) 488
Fsp4HI GCNGC 1 cut(s) 488
FspBI CTAG 1 cut(s) 294
GluI GCNGC 1 cut(s) 488
HapII CCGG 1 cut(s) 657
Hin1II CATG 3 cut(s) 427, 597, 608
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HinfI GANTC 5 cut(s) 5, 260, 608, 626, 643
HpaII CCGG 1 cut(s) 657
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 3 cut(s) 400, 478, 532
Hpy188III TCNNGA 5 cut(s) 12, 41, 71, 605, 640
Hpy8I GTNNAC 1 cut(s) 358
HpyAV CCTTC 1 cut(s) 218
HpyCH4III ACNGT 2 cut(s) 271, 652
HpyCH4V TGCA 7 cut(s) 110, 190, 423, 490, 569, 633, 703
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 314, 496
HpyF3I CTNAG 1 cut(s) 203
Hsp92II CATG 3 cut(s) 427, 597, 608
Kzo9I GATC 4 cut(s) 43, 196, 233, 296
LpnPI CCDG 7 cut(s) 41, 74, 77, 140, 393, 619, 670
Lsp1109I GCAGC 1 cut(s) 474
LweI GCATC 1 cut(s) 562
MaeI CTAG 1 cut(s) 294
MaeIII GTNAC 2 cut(s) 286, 652
MalI GATC 4 cut(s) 45, 198, 235, 298
MbiI CCGCTC 1 cut(s) 332
MboI GATC 4 cut(s) 43, 196, 233, 296
MboII GAAGA 4 cut(s) 191, 293, 557, 593
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 2 cut(s) 43, 296
MhlI GDGCHC 1 cut(s) 310
MluCI AATT 3 cut(s) 36, 96, 135
MlyI GAGTC 2 cut(s) 269, 620
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 3 cut(s) 99, 109, 358
MseI TTAA 3 cut(s) 129, 363, 512
MspA1I CMGCKG 1 cut(s) 154
MspCI CTTAAG 1 cut(s) 128
MspI CCGG 1 cut(s) 657
MunI CAATTG 1 cut(s) 135
Mva1269I GAATGC 1 cut(s) 127
MwoI GCNNNNNNNGC 3 cut(s) 131, 314, 496
NdeII GATC 4 cut(s) 43, 196, 233, 296
NlaIII CATG 3 cut(s) 427, 597, 608
NlaIV GGNNCC 1 cut(s) 498
NmuCI GTSAC 1 cut(s) 286
NspI RCATGY 1 cut(s) 427
PagI TCATGA 1 cut(s) 604
PctI GAATGC 1 cut(s) 127
PfeI GAWTC 3 cut(s) 5, 608, 643
PkrI GCNGC 1 cut(s) 489
Ple19I CGATCG 1 cut(s) 236
PleI GAGTC 2 cut(s) 268, 620
PpsI GAGTC 2 cut(s) 268, 620
PshBI ATTAAT 1 cut(s) 363
PspN4I GGNNCC 1 cut(s) 498
PspPI GGNCC 1 cut(s) 448
PsuI RGATCY 2 cut(s) 43, 296
PvuI CGATCG 1 cut(s) 236
PvuII CAGCTG 1 cut(s) 154
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SaqAI TTAA 3 cut(s) 129, 363, 512
SatI GCNGC 1 cut(s) 488
Sau3AI GATC 4 cut(s) 43, 196, 233, 296
Sau96I GGNCC 1 cut(s) 448
SchI GAGTC 2 cut(s) 269, 620
SduI GDGCHC 1 cut(s) 310
SetI ASST 7 cut(s) 91, 156, 295, 307, 382, 453, 505
SfaNI GCATC 1 cut(s) 562
SfcI CTRYAG 1 cut(s) 300
SinI GGWCC 1 cut(s) 448
SmlI CTYRAG 3 cut(s) 128, 551, 638
SmoI CTYRAG 3 cut(s) 128, 551, 638
Sse9I AATT 3 cut(s) 36, 96, 135
SsiI CCGC 1 cut(s) 332
SspI AATATT 1 cut(s) 585
SspMI CTAG 1 cut(s) 294
TaaI ACNGT 2 cut(s) 271, 652
TaqI TCGA 2 cut(s) 70, 263
TaqII GACCGA 1 cut(s) 270
TasI AATT 3 cut(s) 36, 96, 135
TfiI GAWTC 3 cut(s) 5, 608, 643
Tru1I TTAA 3 cut(s) 129, 363, 512
Tru9I TTAA 3 cut(s) 129, 363, 512
TscAI CASTG 1 cut(s) 117
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 1 cut(s) 487
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 1 cut(s) 593
TspGWI ACGGA 1 cut(s) 529
TspRI CASTG 1 cut(s) 117
Vha464I CTTAAG 1 cut(s) 128
VpaK11BI GGWCC 1 cut(s) 448
VspI ATTAAT 1 cut(s) 363
XapI RAATTY 1 cut(s) 96
XceI RCATGY 1 cut(s) 427
XspI CTAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.