Rroxscaffold_3G00264440

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000392
Physical Location & Seq
Forward (+)
58082379 .. 58082891
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00264440.1

Sequence Viewer

Length: 402 bp
ATGCAGGACAGTGAAGGGCACTGGCCGGAAGGGCTGCAGAAACTGATGGAGTATATAAAGGAAAAATATCAAAATCCAAAAATCTACATCTCCGAAAATGGACTTTTTACAATAAGGAACGATGAACTTGCACTTGCTGATCAATTGAAGGACCCAGAACGAATTTCATTTATTGTTCGTCATTTGTATCGTCTCAACAAAGCAATTAAGAACGGGGTAAACGTGAAAGGCTACTTCTACTGGTCTCTCTTCGATGACTTTGAATGGGGAATGGGGTTTTTGCATAGGTATGGGCTATACTATATCGATTTCGATCACAATAACAGGCGCATCTCCAAGCAGTCTGCTGAGTGGTTCAAAGCTTTCCTTCAAAGTGATCATGTGACTCGAGCTAGCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

133

Amino Acids

15.98

Weight (kDa)

6.97

Isoelectric Point (pI)

30.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 8 - 125 3.2e-35 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 23
AcsI RAATTY 1 cut(s) 162
AgsI TTSAA 4 cut(s) 148, 263, 358, 371
AluBI AGCT 3 cut(s) 362, 392, 399
AluI AGCT 3 cut(s) 362, 392, 399
Alw26I GTCTC 2 cut(s) 197, 249
AlwNI CAGNNNCTG 1 cut(s) 43
Ama87I CYCGRG 1 cut(s) 387
AoxI GGCC 1 cut(s) 23
ApeKI GCWGC 2 cut(s) 34, 396
ApoI RAATTY 1 cut(s) 162
AspLEI GCGC 1 cut(s) 330
AspS9I GGNCC 1 cut(s) 151
AsuNHI GCTAGC 1 cut(s) 392
AvaI CYCGRG 1 cut(s) 387
AvaII GGWCC 1 cut(s) 151
BaeGI GKGCMC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 21
BccI CCATC 1 cut(s) 40
BcgI CGANNNNNNTGC 2 cut(s) 110, 144
BclI TGATCA 2 cut(s) 139, 376
BcoDI GTCTC 2 cut(s) 197, 249
BfaI CTAG 1 cut(s) 393
BfmI CTRYAG 1 cut(s) 35
BglI GCCNNNNNGGC 1 cut(s) 31
BisI GCNGC 2 cut(s) 35, 397
BlsI GCNGC 2 cut(s) 36, 398
Bme18I GGWCC 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 387
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 1 cut(s) 153
BmsI GCATC 1 cut(s) 339
BmtI GCTAGC 1 cut(s) 396
Bsa29I ATCGAT 1 cut(s) 306
BsaBI GATNNNNATC 1 cut(s) 312
BsaI GGTCTC 1 cut(s) 249
Bse1I ACTGG 2 cut(s) 26, 245
Bse8I GATNNNNATC 1 cut(s) 312
BseCI ATCGAT 1 cut(s) 306
BseJI GATNNNNATC 1 cut(s) 312
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 2 cut(s) 26, 245
BseSI GKGCMC 1 cut(s) 21
BseXI GCAGC 1 cut(s) 21
BshFI GGCC 1 cut(s) 25
BshVI ATCGAT 1 cut(s) 306
BsiHKCI CYCGRG 1 cut(s) 387
BsiSI CCGG 1 cut(s) 26
BsmAI GTCTC 2 cut(s) 197, 249
BsmBI CGTCTC 1 cut(s) 197
BsnI GGCC 1 cut(s) 25
Bso31I GGTCTC 1 cut(s) 249
BsoBI CYCGRG 1 cut(s) 387
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 3 cut(s) 139, 313, 376
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 340
BspDI ATCGAT 1 cut(s) 306
BspLI GGNNCC 1 cut(s) 153
BspMAI CTGCAG 1 cut(s) 39
BspOI GCTAGC 1 cut(s) 396
BspTNI GGTCTC 1 cut(s) 249
BsrI ACTGG 2 cut(s) 26, 245
BssMI GATC 3 cut(s) 139, 313, 376
Bst4CI ACNGT 1 cut(s) 11
Bst6I CTCTTC 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 394
BstDEI CTNAG 1 cut(s) 348
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 3 cut(s) 142, 316, 379
BstMAI GTCTC 2 cut(s) 197, 249
BstMBI GATC 3 cut(s) 139, 313, 376
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstSFI CTRYAG 1 cut(s) 35
BstSLI GKGCMC 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 21
Bsu15I ATCGAT 1 cut(s) 306
BsuRI GGCC 1 cut(s) 25
BsuTUI ATCGAT 1 cut(s) 306
BtsIMutI CAGTG 2 cut(s) 16, 19
Cac8I GCNNGC 1 cut(s) 394
CaiI CAGNNNCTG 1 cut(s) 43
CfoI GCGC 1 cut(s) 330
Cfr13I GGNCC 1 cut(s) 151
ClaI ATCGAT 1 cut(s) 306
CviAII CATG 1 cut(s) 380
CviJI RGCY 7 cut(s) 25, 34, 231, 295, 362, 392, 399
CviKI_1 RGCY 7 cut(s) 25, 34, 231, 295, 362, 392, 399
DdeI CTNAG 1 cut(s) 348
DpnI GATC 3 cut(s) 141, 315, 378
DpnII GATC 3 cut(s) 139, 313, 376
EaeI YGGCCR 1 cut(s) 23
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
Eco31I GGTCTC 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 151
Eco88I CYCGRG 1 cut(s) 387
EcoO109I RGGNCCY 1 cut(s) 151
Esp3I CGTCTC 1 cut(s) 197
FaeI CATG 1 cut(s) 383
FaiI YATR 7 cut(s) 54, 56, 285, 291, 298, 303, 381
FalI AAGNNNNNCTT 2 cut(s) 351, 383
FatI CATG 1 cut(s) 379
FbaI TGATCA 2 cut(s) 139, 376
Fnu4HI GCNGC 2 cut(s) 35, 397
Fsp4HI GCNGC 2 cut(s) 35, 397
FspBI CTAG 1 cut(s) 393
GlaI GCGC 1 cut(s) 329
GluI GCNGC 2 cut(s) 35, 397
HaeIII GGCC 1 cut(s) 25
HapII CCGG 1 cut(s) 26
HhaI GCGC 1 cut(s) 330
Hin1II CATG 1 cut(s) 383
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HindIII AAGCTT 1 cut(s) 360
HinfI GANTC 1 cut(s) 385
HpaII CCGG 1 cut(s) 26
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 1 cut(s) 94
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 4 cut(s) 8, 23, 142, 377
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 4 cut(s) 4, 37, 131, 283
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 1 cut(s) 348
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 1 cut(s) 383
HspAI GCGC 1 cut(s) 328
Ksp22I TGATCA 2 cut(s) 139, 376
Kzo9I GATC 3 cut(s) 139, 313, 376
LpnPI CCDG 5 cut(s) 7, 39, 168, 226, 310
Lsp1109I GCAGC 1 cut(s) 21
LweI GCATC 1 cut(s) 339
MaeI CTAG 1 cut(s) 393
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 382
MalI GATC 3 cut(s) 141, 315, 378
MboI GATC 3 cut(s) 139, 313, 376
MboII GAAGA 1 cut(s) 241
MfeI CAATTG 1 cut(s) 143
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 3 cut(s) 143, 162, 204
MlyI GAGTC 1 cut(s) 379
MseI TTAA 1 cut(s) 207
MslI CAYNNNNRTG 1 cut(s) 288
MspI CCGG 1 cut(s) 26
MunI CAATTG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeII GATC 3 cut(s) 139, 313, 376
NheI GCTAGC 1 cut(s) 392
NlaIII CATG 1 cut(s) 383
NlaIV GGNNCC 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 382
PaeR7I CTCGAG 1 cut(s) 387
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PkrI GCNGC 2 cut(s) 36, 398
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
PpuMI RGGWCCY 1 cut(s) 151
Psp5II RGGWCCY 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 1 cut(s) 151
PspPPI RGGWCCY 1 cut(s) 151
PspXI VCTCGAGB 1 cut(s) 387
PstI CTGCAG 1 cut(s) 39
PstNI CAGNNNCTG 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 288
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 2 cut(s) 35, 397
Sau3AI GATC 3 cut(s) 139, 313, 376
Sau96I GGNCC 1 cut(s) 151
SchI GAGTC 1 cut(s) 379
SduI GDGCHC 1 cut(s) 21
SetI ASST 5 cut(s) 225, 290, 364, 394, 401
SfaNI GCATC 1 cut(s) 339
SfcI CTRYAG 1 cut(s) 35
Sfr274I CTCGAG 1 cut(s) 387
SinI GGWCC 1 cut(s) 151
SlaI CTCGAG 1 cut(s) 387
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 387
SmoI CTYRAG 1 cut(s) 387
Sse9I AATT 3 cut(s) 143, 162, 204
SspMI CTAG 1 cut(s) 393
TaaI ACNGT 1 cut(s) 11
TaiI ACGT 1 cut(s) 225
TaqI TCGA 4 cut(s) 252, 306, 312, 388
TasI AATT 3 cut(s) 143, 162, 204
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 2 cut(s) 16, 26
TseFI GTSAC 1 cut(s) 382
TseI GCWGC 2 cut(s) 34, 396
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 2 cut(s) 138, 156
TspRI CASTG 2 cut(s) 16, 26
VpaK11BI GGWCC 1 cut(s) 151
XapI RAATTY 1 cut(s) 162
XhoI CTCGAG 1 cut(s) 387
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.