Rh3AG198700

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Forward (+)
19451338 .. 19454462
3125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG198700.1

Sequence Viewer

Length: 1230 bp
ATGGAGTTTTCACCAACATGGTTAAGGATTTCACAGAGGATGATGTGTGCTATTGCTTTCATTGCCTGTTTTTCACCAGTTACGGTGAATGCTAAGATAAAGTTCCAGGCATTGCACATCAATATATCAAACCCTAAAGAATTAAAAGTGAAGTGGTCCGACTTCCCCAATGATTTTGCATTTGGAGTCAGCACTGCTGCTGCACAGATTGAAGGATCAACAAATAAAGCAGGACGAGGACCAAGTGTTTGGGACGAGTTTGTTAAGACATTCCCAGAACGCATTGCAGACCATTCTACCATGTCTACCGCAATCGACTCATACAAGCGATACAAGGAAGATGTGAAGGCAGTGAAAGCCCTTGGAGTTGATTCTTATAGATTTTCCATCTCTTGGACCAGGATTCTCCCCAAGGGAACCTTGAGTGGAGGAATAAACCAAGAGGGTATTGATCACTACAACAACTTGATTGATGAACTAATCAAGAATGGTTCCTATGTTGAGCCTTATTCAAATTCATCTGAGGACAAAGCTGCAGCAAAAAGAATTTTGGACTTTGAACTTGGATGGTTCATGGAACCAATAGTATATGGACATTATCCAAAGAGTATGAGGCGCTTGGTCAGGAAAAGGCTACCCCGTTTCACCAAAGAAGAGAAGAAATTGATTAAAGGATCCTTTGATTTCATTGGCATCAACTATTATACCTCGAGATATGGTAGAAACATTCCAGCACGTCTAGATATGCCAAACTTCTATCGCTATGATCCTCTAGCGTCATCAGAGCGCAAGAATGTAAATGGAGTCCCAATTGGTCCTCAGGCTGATGGTAGCATGTTCATCTTGTCTTATCCACAAGGTCTCAAGAAACTTTTGAAGTTCATGAAGCGAAAATACCAGAGCCCTAAGATCTACATTTCCGAAAATGGAATTACAGAGGCAAAGGACGATAAGCGTGGACTTGATGTAGCACTGAAGGATCCACATAGAATTGAATGTATTCTTCGGCATTTGTACATGATCAAGCAGGCCATAAAGAAGGGTGTGAACGTCAAAGGATATTTCCACTGGGCTTTATTTGACGATTTTGAGTGGGGGGAAGGCTATATCCCAAGGTACGGGCTTTATTATGTCGACTACAATGACAATCTCAAGCGCATTCCTAAGGAATCTGCAAAGTGGCTCCCTAAATTCCTAAAAGGCGAAGATGCGATACATGTCAAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

409

Amino Acids

47.14

Weight (kDa)

9.51

Isoelectric Point (pI)

40.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 54 - 164 1.8e-41 Glycosyl hydrolase family 1
Glyco_hydro_1 PF00232 164 - 400 3.6e-61 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 393
AccI GTMKAC 2 cut(s) 305, 1134
AciI CCGC 1 cut(s) 309
AclWI GGATC 6 cut(s) 223, 669, 682, 761, 974, 987
AcsI RAATTY 3 cut(s) 514, 546, 1190
AcuI CTGAAG 1 cut(s) 995
AfaI GTAC 2 cut(s) 1016, 1118
AfiI CCNNNNNNNGG 2 cut(s) 393, 1118
AflIII ACRYGT 1 cut(s) 1216
AgsI TTSAA 5 cut(s) 212, 513, 560, 877, 995
AjiI CACGTC 1 cut(s) 737
AjnI CCWGG 2 cut(s) 105, 398
AluBI AGCT 2 cut(s) 533, 1226
AluI AGCT 2 cut(s) 533, 1226
Alw26I GTCTC 1 cut(s) 866
AlwI GGATC 6 cut(s) 223, 669, 682, 761, 974, 987
Ama87I CYCGRG 1 cut(s) 709
AoxI GGCC 1 cut(s) 1029
ApeKI GCWGC 4 cut(s) 197, 200, 533, 536
ApoI RAATTY 3 cut(s) 514, 546, 1190
ArsI GACNNNNNNTTYG 2 cut(s) 231, 263
Asp700I GAANNNNTTC 1 cut(s) 999
AspLEI GCGC 3 cut(s) 618, 789, 1158
AspS9I GGNCC 4 cut(s) 156, 239, 396, 815
AsuHPI GGTGA 4 cut(s) 3, 66, 97, 637
AvaI CYCGRG 1 cut(s) 709
AvaII GGWCC 4 cut(s) 156, 239, 396, 815
AxyI CCTNAGG 2 cut(s) 819, 1164
BamHI GGATCC 2 cut(s) 674, 979
BanII GRGCYC 1 cut(s) 905
BarI GAAGNNNNNNTAC 4 cut(s) 878, 910, 1197, 1229
BbvI GCAGC 4 cut(s) 184, 187, 520, 548
BccI CCATC 3 cut(s) 395, 561, 821
BciT130I CCWGG 2 cut(s) 107, 400
BclI TGATCA 2 cut(s) 451, 1020
BcoDI GTCTC 1 cut(s) 866
BfaI CTAG 2 cut(s) 740, 773
BfmI CTRYAG 1 cut(s) 534
BfoI RGCGCY 1 cut(s) 619
BglII AGATCT 1 cut(s) 909
BisI GCNGC 4 cut(s) 198, 201, 534, 537
BlsI GCNGC 4 cut(s) 199, 202, 535, 538
Bme1390I CCNGG 2 cut(s) 107, 400
Bme18I GGWCC 4 cut(s) 156, 239, 396, 815
BmeT110I CYCGRG 1 cut(s) 709
BmgBI CACGTC 1 cut(s) 737
BmgT120I GGNCC 4 cut(s) 156, 239, 396, 815
BmiI GGNNCC 6 cut(s) 418, 493, 579, 676, 981, 1184
BmrFI CCNGG 2 cut(s) 107, 400
BmrI ACTGGG 1 cut(s) 1078
BmsI GCATC 2 cut(s) 702, 1198
BmuI ACTGGG 1 cut(s) 1078
BpuEI CTTGAG 3 cut(s) 442, 848, 1136
BsaI GGTCTC 1 cut(s) 866
BsaJI CCNNGG 3 cut(s) 361, 411, 1112
Bsc4I CCNNNNNNNGG 2 cut(s) 393, 1118
Bse1I ACTGG 2 cut(s) 77, 1073
Bse21I CCTNAGG 2 cut(s) 819, 1164
Bse3DI GCAATG 3 cut(s) 60, 110, 282
BseBI CCWGG 2 cut(s) 107, 400
BseDI CCNNGG 3 cut(s) 361, 411, 1112
BseGI GGATG 2 cut(s) 45, 572
BseLI CCNNNNNNNGG 2 cut(s) 393, 1118
BseMI GCAATG 3 cut(s) 60, 110, 282
BseMII CTCAG 2 cut(s) 513, 833
BseNI ACTGG 2 cut(s) 77, 1073
BseXI GCAGC 4 cut(s) 184, 187, 520, 548
BsgI GTGCAG 1 cut(s) 186
BshFI GGCC 1 cut(s) 1031
BsiHKCI CYCGRG 1 cut(s) 709
BslFI GGGAC 2 cut(s) 266, 791
BslI CCNNNNNNNGG 2 cut(s) 393, 1118
BsmAI GTCTC 1 cut(s) 866
BsmFI GGGAC 2 cut(s) 266, 791
BsmI GAATGC 2 cut(s) 94, 1158
BsnI GGCC 1 cut(s) 1031
Bso31I GGTCTC 1 cut(s) 866
BsoBI CYCGRG 1 cut(s) 709
Bsp1286I GDGCHC 1 cut(s) 905
Bsp1407I TGTACA 1 cut(s) 1014
Bsp143I GATC 7 cut(s) 215, 451, 674, 766, 909, 979, 1020
BspACI CCGC 1 cut(s) 309
BspANI GGCC 1 cut(s) 1031
BspCNI CTCAG 2 cut(s) 514, 832
BspHI TCATGA 1 cut(s) 882
BspLI GGNNCC 6 cut(s) 418, 493, 579, 676, 981, 1184
BspMAI CTGCAG 1 cut(s) 538
BspPI GGATC 6 cut(s) 223, 669, 682, 761, 974, 987
BspTNI GGTCTC 1 cut(s) 866
BsrDI GCAATG 3 cut(s) 60, 110, 282
BsrGI TGTACA 1 cut(s) 1014
BsrI ACTGG 2 cut(s) 77, 1073
BssECI CCNNGG 3 cut(s) 361, 411, 1112
BssMI GATC 7 cut(s) 215, 451, 674, 766, 909, 979, 1020
BssT1I CCWWGG 3 cut(s) 361, 411, 1112
Bst2UI CCWGG 2 cut(s) 107, 400
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 648
BstAUI TGTACA 1 cut(s) 1014
BstC8I GCNNGC 1 cut(s) 1029
BstDEI CTNAG 6 cut(s) 93, 522, 819, 906, 1164, 1227
BstF5I GGATG 2 cut(s) 45, 572
BstH2I RGCGCY 1 cut(s) 619
BstHHI GCGC 3 cut(s) 618, 789, 1158
BstKTI GATC 7 cut(s) 218, 454, 677, 769, 912, 982, 1023
BstMAI GTCTC 1 cut(s) 866
BstMBI GATC 7 cut(s) 215, 451, 674, 766, 909, 979, 1020
BstMWI GCNNNNNNNGC 2 cut(s) 62, 356
BstNI CCWGG 2 cut(s) 107, 400
BstNSI RCATGY 2 cut(s) 838, 1220
BstSCI CCNGG 2 cut(s) 105, 398
BstSFI CTRYAG 1 cut(s) 534
BstV1I GCAGC 4 cut(s) 184, 187, 520, 548
BstX2I RGATCY 3 cut(s) 674, 909, 979
BstXI CCANNNNNNTGG 1 cut(s) 249
BstYI RGATCY 3 cut(s) 674, 909, 979
Bsu36I CCTNAGG 2 cut(s) 819, 1164
BsuRI GGCC 1 cut(s) 1031
BtrI CACGTC 1 cut(s) 737
BtsCI GGATG 2 cut(s) 45, 572
BtsI GCAGTG 2 cut(s) 192, 357
BtsIMutI CAGTG 4 cut(s) 192, 357, 971, 1066
Cac8I GCNNGC 1 cut(s) 1029
CciI TCATGA 1 cut(s) 882
CfoI GCGC 3 cut(s) 618, 789, 1158
Cfr13I GGNCC 4 cut(s) 156, 239, 396, 815
CseI GACGC 1 cut(s) 765
Csp6I GTAC 2 cut(s) 1015, 1117
CviAII CATG 7 cut(s) 18, 301, 574, 835, 883, 1018, 1217
CviQI GTAC 2 cut(s) 1015, 1117
DdeI CTNAG 6 cut(s) 93, 522, 819, 906, 1164, 1227
DpnI GATC 7 cut(s) 217, 453, 676, 768, 911, 981, 1022
DpnII GATC 7 cut(s) 215, 451, 674, 766, 909, 979, 1020
Eam1104I CTCTTC 1 cut(s) 648
EarI CTCTTC 1 cut(s) 648
Eco130I CCWWGG 3 cut(s) 361, 411, 1112
Eco24I GRGCYC 1 cut(s) 905
Eco31I GGTCTC 1 cut(s) 866
Eco47I GGWCC 4 cut(s) 156, 239, 396, 815
Eco57I CTGAAG 1 cut(s) 995
Eco81I CCTNAGG 2 cut(s) 819, 1164
Eco88I CYCGRG 1 cut(s) 709
EcoRII CCWGG 2 cut(s) 105, 398
EcoT14I CCWWGG 3 cut(s) 361, 411, 1112
EcoT38I GRGCYC 1 cut(s) 905
ErhI CCWWGG 3 cut(s) 361, 411, 1112
FaeI CATG 7 cut(s) 21, 304, 577, 838, 886, 1021, 1220
FalI AAGNNNNNCTT 2 cut(s) 404, 436
FaqI GGGAC 2 cut(s) 266, 791
FatI CATG 7 cut(s) 17, 300, 573, 834, 882, 1017, 1216
FbaI TGATCA 2 cut(s) 451, 1020
FblI GTMKAC 2 cut(s) 305, 1134
Fnu4HI GCNGC 4 cut(s) 198, 201, 534, 537
FokI GGATG 2 cut(s) 52, 579
FriOI GRGCYC 1 cut(s) 905
Fsp4HI GCNGC 4 cut(s) 198, 201, 534, 537
FspBI CTAG 2 cut(s) 740, 773
GlaI GCGC 3 cut(s) 617, 788, 1157
GluI GCNGC 4 cut(s) 198, 201, 534, 537
HaeII RGCGCY 1 cut(s) 619
HaeIII GGCC 1 cut(s) 1031
HgaI GACGC 1 cut(s) 765
HhaI GCGC 3 cut(s) 618, 789, 1158
Hin1II CATG 7 cut(s) 21, 304, 577, 838, 886, 1021, 1220
Hin6I GCGC 3 cut(s) 616, 787, 1156
HinP1I GCGC 3 cut(s) 616, 787, 1156
HincII GTYRAC 1 cut(s) 1135
HindII GTYRAC 1 cut(s) 1135
HindIII AAGCTT 1 cut(s) 1224
HinfI GANTC 6 cut(s) 186, 317, 371, 403, 804, 1169
HphI GGTGA 4 cut(s) 3, 66, 97, 637
Hpy166II GTNNAC 4 cut(s) 306, 959, 1048, 1135
Hpy188I TCNGA 4 cut(s) 160, 523, 784, 922
Hpy188III TCNNGA 6 cut(s) 484, 625, 711, 740, 865, 883
Hpy8I GTNNAC 4 cut(s) 306, 959, 1048, 1135
HpyAV CCTTC 5 cut(s) 206, 340, 970, 1033, 1094
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 2 cut(s) 736, 1050
HpyCH4V TGCA 6 cut(s) 115, 179, 203, 287, 536, 1175
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 356
HpyF3I CTNAG 6 cut(s) 93, 522, 819, 906, 1164, 1227
HpySE526I ACGT 2 cut(s) 736, 1050
Hsp92II CATG 7 cut(s) 21, 304, 577, 838, 886, 1021, 1220
HspAI GCGC 3 cut(s) 616, 787, 1156
Ksp22I TGATCA 2 cut(s) 451, 1020
Kzo9I GATC 7 cut(s) 215, 451, 674, 766, 909, 979, 1020
LmnI GCTCC 1 cut(s) 1188
Lsp1109I GCAGC 4 cut(s) 184, 187, 520, 548
LweI GCATC 2 cut(s) 702, 1198
MaeI CTAG 2 cut(s) 740, 773
MaeII ACGT 2 cut(s) 736, 1050
MaeIII GTNAC 1 cut(s) 79
MalI GATC 7 cut(s) 217, 453, 676, 768, 911, 981, 1022
MboI GATC 7 cut(s) 215, 451, 674, 766, 909, 979, 1020
MboII GAAGA 5 cut(s) 350, 665, 670, 995, 1217
MfeI CAATTG 1 cut(s) 810
MflI RGATCY 3 cut(s) 674, 909, 979
MhlI GDGCHC 1 cut(s) 905
MluCI AATT 8 cut(s) 140, 514, 546, 662, 810, 930, 990, 1190
MlyI GAGTC 3 cut(s) 195, 311, 813
MmeI TCCRAC 1 cut(s) 183
MroXI GAANNNNTTC 1 cut(s) 999
MseI TTAA 4 cut(s) 23, 143, 264, 669
MslI CAYNNNNRTG 1 cut(s) 16
MspR9I CCNGG 2 cut(s) 107, 400
MunI CAATTG 1 cut(s) 810
Mva1269I GAATGC 2 cut(s) 94, 1158
MvaI CCWGG 2 cut(s) 107, 400
MwoI GCNNNNNNNGC 2 cut(s) 62, 356
NdeII GATC 7 cut(s) 215, 451, 674, 766, 909, 979, 1020
NlaIII CATG 7 cut(s) 21, 304, 577, 838, 886, 1021, 1220
NlaIV GGNNCC 6 cut(s) 418, 493, 579, 676, 981, 1184
NspI RCATGY 2 cut(s) 838, 1220
PaeR7I CTCGAG 1 cut(s) 709
PagI TCATGA 1 cut(s) 882
PciI ACATGT 1 cut(s) 1216
PctI GAATGC 2 cut(s) 94, 1158
PdmI GAANNNNTTC 1 cut(s) 999
PfeI GAWTC 3 cut(s) 371, 403, 1169
PflMI CCANNNNNTGG 1 cut(s) 393
PkrI GCNGC 4 cut(s) 199, 202, 535, 538
PleI GAGTC 3 cut(s) 194, 311, 812
PpsI GAGTC 3 cut(s) 194, 311, 812
PscI ACATGT 1 cut(s) 1216
Psp6I CCWGG 2 cut(s) 105, 398
PspGI CCWGG 2 cut(s) 105, 398
PspN4I GGNNCC 6 cut(s) 418, 493, 579, 676, 981, 1184
PspPI GGNCC 4 cut(s) 156, 239, 396, 815
PstI CTGCAG 1 cut(s) 538
PsuI RGATCY 3 cut(s) 674, 909, 979
RsaI GTAC 2 cut(s) 1016, 1118
RsaNI GTAC 2 cut(s) 1015, 1117
RseI CAYNNNNRTG 1 cut(s) 16
SalI GTCGAC 1 cut(s) 1133
SaqAI TTAA 4 cut(s) 23, 143, 264, 669
SatI GCNGC 4 cut(s) 198, 201, 534, 537
Sau3AI GATC 7 cut(s) 215, 451, 674, 766, 909, 979, 1020
Sau96I GGNCC 4 cut(s) 156, 239, 396, 815
SchI GAGTC 3 cut(s) 195, 311, 813
ScrFI CCNGG 2 cut(s) 107, 400
SduI GDGCHC 1 cut(s) 905
SetI ASST 8 cut(s) 422, 535, 710, 739, 862, 1053, 1118, 1228
SfaNI GCATC 2 cut(s) 702, 1198
SfcI CTRYAG 1 cut(s) 534
Sfr274I CTCGAG 1 cut(s) 709
SinI GGWCC 4 cut(s) 156, 239, 396, 815
SlaI CTCGAG 1 cut(s) 709
SmiMI CAYNNNNRTG 1 cut(s) 16
SmlI CTYRAG 4 cut(s) 421, 709, 863, 1151
SmoI CTYRAG 4 cut(s) 421, 709, 863, 1151
Sse9I AATT 8 cut(s) 140, 514, 546, 662, 810, 930, 990, 1190
SsiI CCGC 1 cut(s) 309
SspMI CTAG 2 cut(s) 740, 773
StyD4I CCNGG 2 cut(s) 105, 398
StyI CCWWGG 3 cut(s) 361, 411, 1112
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 2 cut(s) 739, 1053
TaqI TCGA 3 cut(s) 315, 710, 1134
TasI AATT 8 cut(s) 140, 514, 546, 662, 810, 930, 990, 1190
TatI WGTACW 1 cut(s) 1014
TfiI GAWTC 3 cut(s) 371, 403, 1169
Tru1I TTAA 4 cut(s) 23, 143, 264, 669
Tru9I TTAA 4 cut(s) 23, 143, 264, 669
TscAI CASTG 4 cut(s) 199, 357, 978, 1073
TseI GCWGC 4 cut(s) 197, 200, 533, 536
TspDTI ATGAA 8 cut(s) 49, 489, 507, 562, 676, 829, 871, 899
TspRI CASTG 4 cut(s) 199, 357, 978, 1073
Van91I CCANNNNNTGG 1 cut(s) 393
VpaK11BI GGWCC 4 cut(s) 156, 239, 396, 815
XapI RAATTY 3 cut(s) 514, 546, 1190
XbaI TCTAGA 1 cut(s) 739
XceI RCATGY 2 cut(s) 838, 1220
XhoI CTCGAG 1 cut(s) 709
XmiI GTMKAC 2 cut(s) 305, 1134
XmnI GAANNNNTTC 1 cut(s) 999
XspI CTAG 2 cut(s) 740, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.