Rmu_sc0000526.1_g000002

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000526.1
OG0000392
Physical Location & Seq
Reverse (-)
2785 .. 4190
1406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000526.1_g000002.1.cds

Sequence Viewer

Length: 921 bp
atgggttatgatcttgctgttgctccaccaggcaggtgttcagtacaactaccaaaaagcaagattggatgcaaagttggtaattcatctaccgaaccttacattgtgacccataaccttatcctctctcatgctactgttgttaagctctatagagagaactttcaggcaaaacaaggtggacaaattggatggtctcatgtaggtcagtatgttgagccttattcagatacagaagaagacaaagctgcagcaaaaagaattttagactttgaacttggatggttcatggaaccaatagtattcggagattacccaaagattatgagagatttggtcaaggaaaggctaccccttttcactgaagaagagaaaaaattgatcaagggatccttcgatttcattggcatcaactattataccacgagatatggtaaaaacgttccagcaagtcaagctgaaccattgagttatcacaatgacgctttggctacatctactgaaacaaatgcaaatggagtcttaattggtcctcttgctaatggaagcgtctacatcttctcttatccacaaggtcttcagaaacttttggagttcatgaagcaaaactaccaaagccctaaaatctacatttccgaaaatggaattacagaagaaaaggacgataatcttggactcgatgtagcagtcaaggatccacatagaattgaatgcattcttcgacacttgtacaggatcaagatggcaatgaagaatggggtgaatgtcaaaggatatttccactggactccattcgatgactttgagtggggggaaggctatcttccaaggagcggactttactatgtcgactacaaagacaatctcaagcgcattcctaaagaatctgctaagtggctaccaaatttcttaaagggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

306

Amino Acids

34.89

Weight (kDa)

7.05

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 24
Acc36I ACCTGC 1 cut(s) 24
AccBSI CCGCTC 1 cut(s) 834
AccI GTMKAC 2 cut(s) 552, 849
AciI CCGC 1 cut(s) 834
AclI AACGTT 1 cut(s) 441
AclWI GGATC 5 cut(s) 384, 397, 689, 702, 743
AcsI RAATTY 2 cut(s) 261, 904
AcuI CTGAAG 2 cut(s) 384, 563
AfaI GTAC 2 cut(s) 45, 731
AfiI CCNNNNNNNGG 1 cut(s) 833
AgsI TTSAA 2 cut(s) 275, 710
AjnI CCWGG 1 cut(s) 28
AluBI AGCT 3 cut(s) 148, 248, 458
AluI AGCT 3 cut(s) 148, 248, 458
Alw26I GTCTC 1 cut(s) 201
AlwI GGATC 5 cut(s) 384, 397, 689, 702, 743
ApeKI GCWGC 2 cut(s) 248, 251
ApoI RAATTY 2 cut(s) 261, 904
Asp700I GAANNNNTTC 1 cut(s) 714
AspLEI GCGC 1 cut(s) 873
AspS9I GGNCC 1 cut(s) 530
AsuHPI GGTGA 1 cut(s) 772
AvaII GGWCC 1 cut(s) 530
BamHI GGATCC 2 cut(s) 389, 694
BarI GAAGNNNNNNTAC 2 cut(s) 593, 625
BauI CACGAG 1 cut(s) 424
BbsI GAAGAC 2 cut(s) 246, 569
BbvI GCAGC 2 cut(s) 235, 263
BccI CCATC 3 cut(s) 186, 276, 736
BciT130I CCWGG 1 cut(s) 30
BclI TGATCA 1 cut(s) 381
BcoDI GTCTC 1 cut(s) 201
BfmI CTRYAG 2 cut(s) 151, 249
BfuAI ACCTGC 1 cut(s) 24
BisI GCNGC 2 cut(s) 249, 252
BlsI GCNGC 2 cut(s) 250, 253
Bme1390I CCNGG 1 cut(s) 30
Bme18I GGWCC 1 cut(s) 530
BmgT120I GGNCC 1 cut(s) 530
BmiI GGNNCC 3 cut(s) 294, 391, 696
BmrFI CCNGG 1 cut(s) 30
BmsI GCATC 2 cut(s) 59, 417
BpiI GAAGAC 2 cut(s) 246, 569
BpuEI CTTGAG 1 cut(s) 851
BsaI GGTCTC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 827
Bsc4I CCNNNNNNNGG 1 cut(s) 833
Bse1I ACTGG 1 cut(s) 788
Bse3DI GCAATG 1 cut(s) 753
BseBI CCWGG 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 827
BseGI GGATG 3 cut(s) 74, 197, 287
BseLI CCNNNNNNNGG 1 cut(s) 833
BseMI GCAATG 1 cut(s) 753
BseNI ACTGG 1 cut(s) 788
BseXI GCAGC 2 cut(s) 235, 263
BslI CCNNNNNNNGG 1 cut(s) 833
BsmAI GTCTC 1 cut(s) 201
BsmI GAATGC 3 cut(s) 714, 716, 873
Bso31I GGTCTC 1 cut(s) 201
Bsp1407I TGTACA 1 cut(s) 729
Bsp143I GATC 5 cut(s) 10, 381, 389, 694, 735
BspACI CCGC 1 cut(s) 834
BspHI TCATGA 1 cut(s) 597
BspLI GGNNCC 3 cut(s) 294, 391, 696
BspMAI CTGCAG 1 cut(s) 253
BspMI ACCTGC 1 cut(s) 24
BspPI GGATC 5 cut(s) 384, 397, 689, 702, 743
BspTNI GGTCTC 1 cut(s) 201
BsrBI CCGCTC 1 cut(s) 834
BsrDI GCAATG 1 cut(s) 753
BsrGI TGTACA 1 cut(s) 729
BsrI ACTGG 1 cut(s) 788
BssECI CCNNGG 1 cut(s) 827
BssMI GATC 5 cut(s) 10, 381, 389, 694, 735
BssSI CACGAG 1 cut(s) 424
BssT1I CCWWGG 1 cut(s) 827
Bst2BI CACGAG 1 cut(s) 424
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 363
BstAUI TGTACA 1 cut(s) 729
BstDEI CTNAG 1 cut(s) 891
BstF5I GGATG 3 cut(s) 74, 197, 287
BstHHI GCGC 1 cut(s) 873
BstKTI GATC 5 cut(s) 13, 384, 392, 697, 738
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 5 cut(s) 10, 381, 389, 694, 735
BstMWI GCNNNNNNNGC 1 cut(s) 455
BstNI CCWGG 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 28
BstSFI CTRYAG 2 cut(s) 151, 249
BstV1I GCAGC 2 cut(s) 235, 263
BstV2I GAAGAC 2 cut(s) 246, 569
BstX2I RGATCY 2 cut(s) 389, 694
BstYI RGATCY 2 cut(s) 389, 694
BtsCI GGATG 3 cut(s) 74, 197, 287
BtsIMutI CAGTG 2 cut(s) 360, 781
BveI ACCTGC 1 cut(s) 24
CciI TCATGA 1 cut(s) 597
CfoI GCGC 1 cut(s) 873
Cfr13I GGNCC 1 cut(s) 530
CseI GACGC 2 cut(s) 491, 538
Csp6I GTAC 2 cut(s) 44, 730
CviAII CATG 4 cut(s) 131, 200, 289, 598
CviJI RGCY 9 cut(s) 148, 220, 248, 349, 458, 491, 618, 819, 898
CviKI_1 RGCY 9 cut(s) 148, 220, 248, 349, 458, 491, 618, 819, 898
CviQI GTAC 2 cut(s) 44, 730
DdeI CTNAG 1 cut(s) 891
DpnI GATC 5 cut(s) 12, 383, 391, 696, 737
DpnII GATC 5 cut(s) 10, 381, 389, 694, 735
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco130I CCWWGG 1 cut(s) 827
Eco31I GGTCTC 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 530
Eco57I CTGAAG 2 cut(s) 384, 563
EcoRII CCWGG 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 827
EcoT22I ATGCAT 1 cut(s) 716
ErhI CCWWGG 1 cut(s) 827
FaeI CATG 4 cut(s) 134, 203, 292, 601
FalI AAGNNNNNCTT 4 cut(s) 377, 409, 807, 839
FatI CATG 4 cut(s) 130, 199, 288, 597
FbaI TGATCA 1 cut(s) 381
FblI GTMKAC 2 cut(s) 552, 849
Fnu4HI GCNGC 2 cut(s) 249, 252
FokI GGATG 3 cut(s) 81, 204, 294
Fsp4HI GCNGC 2 cut(s) 249, 252
GlaI GCGC 1 cut(s) 872
GluI GCNGC 2 cut(s) 249, 252
HgaI GACGC 2 cut(s) 491, 538
HhaI GCGC 1 cut(s) 873
Hin1II CATG 4 cut(s) 134, 203, 292, 601
Hin6I GCGC 1 cut(s) 871
HinP1I GCGC 1 cut(s) 871
HincII GTYRAC 1 cut(s) 850
HindII GTYRAC 1 cut(s) 850
HinfI GANTC 4 cut(s) 519, 675, 787, 884
HphI GGTGA 1 cut(s) 772
Hpy166II GTNNAC 3 cut(s) 182, 553, 850
Hpy188I TCNGA 4 cut(s) 229, 308, 582, 637
Hpy188III TCNNGA 2 cut(s) 598, 739
Hpy8I GTNNAC 3 cut(s) 182, 553, 850
HpyAV CCTTC 2 cut(s) 403, 809
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 4 cut(s) 72, 251, 512, 714
HpyF10VI GCNNNNNNNGC 1 cut(s) 455
HpyF3I CTNAG 1 cut(s) 891
HpySE526I ACGT 1 cut(s) 441
Hsp92II CATG 4 cut(s) 134, 203, 292, 601
HspAI GCGC 1 cut(s) 871
Ksp22I TGATCA 1 cut(s) 381
Kzo9I GATC 5 cut(s) 10, 381, 389, 694, 735
LmnI GCTCC 2 cut(s) 28, 831
LpnPI CCDG 7 cut(s) 15, 19, 42, 152, 459, 718, 769
Lsp1109I GCAGC 2 cut(s) 235, 263
LweI GCATC 2 cut(s) 59, 417
MaeII ACGT 1 cut(s) 441
MaeIII GTNAC 1 cut(s) 106
MalI GATC 5 cut(s) 12, 383, 391, 696, 737
MbiI CCGCTC 1 cut(s) 834
MboI GATC 5 cut(s) 10, 381, 389, 694, 735
MflI RGATCY 2 cut(s) 389, 694
MluCI AATT 8 cut(s) 82, 186, 261, 377, 525, 645, 705, 904
MlyI GAGTC 3 cut(s) 528, 669, 781
MnlI CCTC 2 cut(s) 134, 543
Mph1103I ATGCAT 1 cut(s) 716
MroXI GAANNNNTTC 1 cut(s) 714
MseI TTAA 3 cut(s) 144, 524, 911
MspR9I CCNGG 1 cut(s) 30
Mva1269I GAATGC 3 cut(s) 714, 716, 873
MvaI CCWGG 1 cut(s) 30
MwoI GCNNNNNNNGC 1 cut(s) 455
NdeII GATC 5 cut(s) 10, 381, 389, 694, 735
NlaIII CATG 4 cut(s) 134, 203, 292, 601
NlaIV GGNNCC 3 cut(s) 294, 391, 696
NmuCI GTSAC 1 cut(s) 106
NsiI ATGCAT 1 cut(s) 716
PagI TCATGA 1 cut(s) 597
PaqCI CACCTGC 1 cut(s) 24
PctI GAATGC 3 cut(s) 714, 716, 873
PdmI GAANNNNTTC 1 cut(s) 714
PfeI GAWTC 1 cut(s) 884
PkrI GCNGC 2 cut(s) 250, 253
PleI GAGTC 3 cut(s) 527, 669, 781
PpsI GAGTC 3 cut(s) 527, 669, 781
Psp1406I AACGTT 1 cut(s) 441
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 3 cut(s) 294, 391, 696
PspPI GGNCC 1 cut(s) 530
PstI CTGCAG 1 cut(s) 253
PsuI RGATCY 2 cut(s) 389, 694
RsaI GTAC 2 cut(s) 45, 731
RsaNI GTAC 2 cut(s) 44, 730
SalI GTCGAC 1 cut(s) 848
SaqAI TTAA 3 cut(s) 144, 524, 911
SatI GCNGC 2 cut(s) 249, 252
Sau3AI GATC 5 cut(s) 10, 381, 389, 694, 735
Sau96I GGNCC 1 cut(s) 530
SchI GAGTC 3 cut(s) 528, 669, 781
ScrFI CCNGG 1 cut(s) 30
SfaNI GCATC 2 cut(s) 59, 417
SfcI CTRYAG 2 cut(s) 151, 249
SinI GGWCC 1 cut(s) 530
SmlI CTYRAG 1 cut(s) 866
SmoI CTYRAG 1 cut(s) 866
Sse9I AATT 8 cut(s) 82, 186, 261, 377, 525, 645, 705, 904
SsiI CCGC 1 cut(s) 834
StyD4I CCNGG 1 cut(s) 28
StyI CCWWGG 1 cut(s) 827
TaaI ACNGT 1 cut(s) 139
TaiI ACGT 1 cut(s) 444
TaqI TCGA 5 cut(s) 396, 678, 721, 795, 849
TasI AATT 8 cut(s) 82, 186, 261, 377, 525, 645, 705, 904
TatI WGTACW 2 cut(s) 43, 729
TfiI GAWTC 1 cut(s) 884
Tru1I TTAA 3 cut(s) 144, 524, 911
Tru9I TTAA 3 cut(s) 144, 524, 911
TscAI CASTG 2 cut(s) 367, 788
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 2 cut(s) 248, 251
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 6 cut(s) 75, 277, 391, 586, 614, 764
TspRI CASTG 2 cut(s) 367, 788
VpaK11BI GGWCC 1 cut(s) 530
XapI RAATTY 2 cut(s) 261, 904
XmiI GTMKAC 2 cut(s) 552, 849
XmnI GAANNNNTTC 1 cut(s) 714
Zsp2I ATGCAT 1 cut(s) 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.