Rh1CG344200

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000392
Physical Location & Seq
Reverse (-)
62209400 .. 62213181
3782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG344200.1

Sequence Viewer

Length: 681 bp
ATGGAACCAATAGTATTTGGAGATTATCCAAAGATTATGAGAGATTTGGTCAAGGAAAGGCTACCCCTTTTCACCGAAGAAGAGAAAAAATTGATTAAGGGATCCTTCGATTTCATTGGCATCAACTATTATACCACGAGATATGGTAAAAACGTTCCAGCAAGTCAAGCTGAACCATTGAGTTATCACAATGACGTCTTGGCTACATCAACTGAAACAAATGCAAATGGAGTCTTAATTGGTCCTCATGCTGATGGAAGCATCTACATCTTCTCTTATCCACAAGGTCTTCAGAAACTTTTGGAGTTCATGAAGCAAAACTACCAAAGTCCTAAAATCTACATTTCTGAAAATGGAATTACAGAAGAAAAGGACGATAATCTTGGACTCGATGTAGCAGTCAAGGATCCACATAGAATTGAATGCATTCTTCGACACTTGTACCGGATCAGGATGGCAATGAACAGGAATGGGGTGAATGTCAAAGGATATTTCCACTGGGCTCTATTCGATGACTTTGAGTGGGGGGAAGGCTATAGTTCGGACTTTACTATGTCGACTACAAAGACAATCTCAAGCGCATTCCTAAAGAATCTGCTAAGTGGCTACCAAATTTCTTGGTTAGGATGTCATATATGTACGTATAAGCTTAGACATAAGCTCTACATGGTTGTACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

226

Amino Acids

26.05

Weight (kDa)

6.65

Isoelectric Point (pI)

41.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 2 - 185 2.8e-39 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 198
AccI GTMKAC 1 cut(s) 557
AclI AACGTT 1 cut(s) 153
AclWI GGATC 5 cut(s) 96, 109, 401, 414, 455
AcsI RAATTY 1 cut(s) 612
AcuI CTGAAG 1 cut(s) 275
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 3 cut(s) 443, 640, 675
AgsI TTSAA 1 cut(s) 422
AluBI AGCT 3 cut(s) 170, 649, 661
AluI AGCT 3 cut(s) 170, 649, 661
AlwI GGATC 5 cut(s) 96, 109, 401, 414, 455
ApoI RAATTY 1 cut(s) 612
Asp700I GAANNNNTTC 1 cut(s) 426
AspLEI GCGC 1 cut(s) 581
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 2 cut(s) 64, 487
AvaII GGWCC 1 cut(s) 242
BaeI ACNNNNGTAYC 2 cut(s) 425, 458
BamHI GGATCC 2 cut(s) 101, 406
BanII GRGCYC 1 cut(s) 505
BarI GAAGNNNNNNTAC 2 cut(s) 305, 337
BauI CACGAG 1 cut(s) 136
BbsI GAAGAC 1 cut(s) 281
BccI CCATC 2 cut(s) 248, 448
BfmI CTRYAG 1 cut(s) 535
Bme18I GGWCC 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 3 cut(s) 6, 103, 408
BmrI ACTGGG 1 cut(s) 508
BmsI GCATC 2 cut(s) 129, 270
BmuI ACTGGG 1 cut(s) 508
BpiI GAAGAC 1 cut(s) 281
BpuEI CTTGAG 1 cut(s) 559
BsaAI YACGTR 1 cut(s) 642
BsaHI GRCGYC 1 cut(s) 195
BsaWI WCCGGW 1 cut(s) 444
Bse1I ACTGG 1 cut(s) 503
Bse3DI GCAATG 1 cut(s) 465
BseGI GGATG 2 cut(s) 459, 632
BseMI GCAATG 1 cut(s) 465
BseNI ACTGG 1 cut(s) 503
BsiSI CCGG 1 cut(s) 445
BsmI GAATGC 3 cut(s) 426, 428, 581
Bsp1286I GDGCHC 1 cut(s) 505
Bsp143I GATC 3 cut(s) 101, 406, 447
BspHI TCATGA 1 cut(s) 309
BspLI GGNNCC 3 cut(s) 6, 103, 408
BspPI GGATC 5 cut(s) 96, 109, 401, 414, 455
BsrDI GCAATG 1 cut(s) 465
BsrI ACTGG 1 cut(s) 503
BssMI GATC 3 cut(s) 101, 406, 447
BssNI GRCGYC 1 cut(s) 195
BssSI CACGAG 1 cut(s) 136
Bst2BI CACGAG 1 cut(s) 136
Bst6I CTCTTC 1 cut(s) 75
BstACI GRCGYC 1 cut(s) 195
BstBAI YACGTR 1 cut(s) 642
BstDEI CTNAG 2 cut(s) 599, 650
BstF5I GGATG 2 cut(s) 459, 632
BstHHI GCGC 1 cut(s) 581
BstKTI GATC 3 cut(s) 104, 409, 450
BstMBI GATC 3 cut(s) 101, 406, 447
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstSFI CTRYAG 1 cut(s) 535
BstSNI TACGTA 1 cut(s) 642
BstV2I GAAGAC 1 cut(s) 281
BstX2I RGATCY 2 cut(s) 101, 406
BstYI RGATCY 2 cut(s) 101, 406
BtsCI GGATG 2 cut(s) 459, 632
BtsIMutI CAGTG 1 cut(s) 496
CciI TCATGA 1 cut(s) 309
CfoI GCGC 1 cut(s) 581
Cfr13I GGNCC 1 cut(s) 242
Csp6I GTAC 3 cut(s) 442, 639, 674
CviAII CATG 3 cut(s) 248, 310, 667
CviJI RGCY 8 cut(s) 61, 170, 203, 503, 534, 606, 649, 661
CviKI_1 RGCY 8 cut(s) 61, 170, 203, 503, 534, 606, 649, 661
CviQI GTAC 3 cut(s) 442, 639, 674
DdeI CTNAG 2 cut(s) 599, 650
DpnI GATC 3 cut(s) 103, 408, 449
DpnII GATC 3 cut(s) 101, 406, 447
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Eco105I TACGTA 1 cut(s) 642
Eco24I GRGCYC 1 cut(s) 505
Eco47I GGWCC 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 275
EcoT22I ATGCAT 1 cut(s) 428
EcoT38I GRGCYC 1 cut(s) 505
FaeI CATG 3 cut(s) 251, 313, 670
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FatI CATG 3 cut(s) 247, 309, 666
FblI GTMKAC 1 cut(s) 557
FokI GGATG 2 cut(s) 466, 639
FriOI GRGCYC 1 cut(s) 505
GlaI GCGC 1 cut(s) 580
HapII CCGG 1 cut(s) 445
HhaI GCGC 1 cut(s) 581
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 3 cut(s) 251, 313, 670
Hin6I GCGC 1 cut(s) 579
HinP1I GCGC 1 cut(s) 579
HincII GTYRAC 1 cut(s) 558
HindII GTYRAC 1 cut(s) 558
HindIII AAGCTT 1 cut(s) 647
HinfI GANTC 3 cut(s) 231, 387, 592
HpaII CCGG 1 cut(s) 445
HphI GGTGA 2 cut(s) 64, 487
Hpy166II GTNNAC 1 cut(s) 558
Hpy188I TCNGA 3 cut(s) 294, 349, 544
Hpy188III TCNNGA 2 cut(s) 310, 451
Hpy8I GTNNAC 1 cut(s) 558
HpyAV CCTTC 2 cut(s) 115, 524
HpyCH4IV ACGT 3 cut(s) 153, 195, 641
HpyCH4V TGCA 2 cut(s) 224, 426
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 2 cut(s) 599, 650
HpySE526I ACGT 3 cut(s) 153, 195, 641
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 3 cut(s) 251, 313, 670
HspAI GCGC 1 cut(s) 579
Kzo9I GATC 3 cut(s) 101, 406, 447
LpnPI CCDG 5 cut(s) 171, 436, 451, 458, 484
LweI GCATC 2 cut(s) 129, 270
MaeII ACGT 3 cut(s) 153, 195, 641
MalI GATC 3 cut(s) 103, 408, 449
MboI GATC 3 cut(s) 101, 406, 447
MboII GAAGA 6 cut(s) 89, 92, 262, 281, 377, 422
MflI RGATCY 2 cut(s) 101, 406
MhlI GDGCHC 1 cut(s) 505
MluCI AATT 5 cut(s) 89, 237, 357, 417, 612
MlyI GAGTC 2 cut(s) 240, 381
MnlI CCTC 1 cut(s) 255
Mph1103I ATGCAT 1 cut(s) 428
MroXI GAANNNNTTC 1 cut(s) 426
MseI TTAA 2 cut(s) 96, 236
MslI CAYNNNNRTG 1 cut(s) 252
MspI CCGG 1 cut(s) 445
Mva1269I GAATGC 3 cut(s) 426, 428, 581
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeII GATC 3 cut(s) 101, 406, 447
NlaIII CATG 3 cut(s) 251, 313, 670
NlaIV GGNNCC 3 cut(s) 6, 103, 408
NsiI ATGCAT 1 cut(s) 428
PagI TCATGA 1 cut(s) 309
PctI GAATGC 3 cut(s) 426, 428, 581
PdmI GAANNNNTTC 1 cut(s) 426
PfeI GAWTC 1 cut(s) 592
PleI GAGTC 2 cut(s) 239, 381
PpsI GAGTC 2 cut(s) 239, 381
Ppu21I YACGTR 1 cut(s) 642
Psp1406I AACGTT 1 cut(s) 153
PspN4I GGNNCC 3 cut(s) 6, 103, 408
PspPI GGNCC 1 cut(s) 242
PsuI RGATCY 2 cut(s) 101, 406
RsaI GTAC 3 cut(s) 443, 640, 675
RsaNI GTAC 3 cut(s) 442, 639, 674
RseI CAYNNNNRTG 1 cut(s) 252
SalI GTCGAC 1 cut(s) 556
SaqAI TTAA 2 cut(s) 96, 236
Sau3AI GATC 3 cut(s) 101, 406, 447
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 2 cut(s) 240, 381
SduI GDGCHC 1 cut(s) 505
SetI ASST 7 cut(s) 156, 172, 198, 289, 644, 651, 663
SfaNI GCATC 2 cut(s) 129, 270
SfcI CTRYAG 1 cut(s) 535
SinI GGWCC 1 cut(s) 242
SmiMI CAYNNNNRTG 1 cut(s) 252
SmlI CTYRAG 1 cut(s) 574
SmoI CTYRAG 1 cut(s) 574
SnaBI TACGTA 1 cut(s) 642
Sse9I AATT 5 cut(s) 89, 237, 357, 417, 612
TaiI ACGT 3 cut(s) 156, 198, 644
TaqI TCGA 5 cut(s) 108, 390, 433, 510, 557
TasI AATT 5 cut(s) 89, 237, 357, 417, 612
TfiI GAWTC 1 cut(s) 592
Tru1I TTAA 2 cut(s) 96, 236
Tru9I TTAA 2 cut(s) 96, 236
TscAI CASTG 1 cut(s) 503
TspDTI ATGAA 4 cut(s) 103, 298, 326, 476
TspRI CASTG 1 cut(s) 503
VpaK11BI GGWCC 1 cut(s) 242
XapI RAATTY 1 cut(s) 612
XmiI GTMKAC 1 cut(s) 557
XmnI GAANNNNTTC 1 cut(s) 426
ZraI GACGTC 1 cut(s) 196
Zsp2I ATGCAT 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.