RchiOBHm_Chr7g0202591

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000392
Physical Location & Seq
Reverse (-)
20201210 .. 20202424
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18136

Sequence Viewer

Length: 645 bp
ATGAATGATTTTAAAGATTGCAATGAACTTTACTTTAAATTATTTGGAGATGGAGTTAAAAATTGGTTCACAGTCAATGAGCCATCAATTTTTGCTATTTATGGGCATGAAGTTGGGATTGCTCAGCCGAGGAAGTGTTCACTTCAGGATGATCCTTGTGTGTTTGGGCCTGAAGAGAAATATTTTGTCCCTATAGGTCCTTGCAAATTTAGTGCTAAACCGGTCACATTCTCATCCTACATCAGTAACTCATCGACAAAACCTTACATTGTAGCTCACAACCAAATTCTTGCTCATGCCACCACGACTAAACTTTACCAAGAAGAATACCAAGCAAAATATAAGGTTGAAATAGGAATCGTCCTTGTTTTGGAATTGCAGGAAGATAGAGTTGCAGCAGAACGACTTTTCGATTTCAACCTAGGATGGTTATGGAACCATTTGTGTATGGAGATTATCAATGAGTATGAAAGAGTTGGTAAAAGAAAGACTACCTACATCTTTTCCACAAGAGAAAAGTTCGATAAAGGGAAATCTAGATTTTGTTGGAATCGATCAGTTACTACACATCATATTATGCTAGACAGAGGGCCACCATTTAATGAATTGCAATACAGTTATGATGTATCAGCTGAAAATAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

214

Amino Acids

24.99

Weight (kDa)

6.6

Isoelectric Point (pI)

35.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 2 - 150 1.1e-13 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 146
AcsI RAATTY 2 cut(s) 206, 285
AcuI CTGAAG 2 cut(s) 128, 192
AfiI CCNNNNNNNGG 1 cut(s) 370
AgeI ACCGGT 1 cut(s) 220
AgsI TTSAA 2 cut(s) 350, 418
AluBI AGCT 2 cut(s) 275, 632
AluI AGCT 2 cut(s) 275, 632
AlwI GGATC 1 cut(s) 146
AoxI GGCC 2 cut(s) 167, 590
ApeKI GCWGC 1 cut(s) 395
ApoI RAATTY 2 cut(s) 206, 285
AsiGI ACCGGT 1 cut(s) 220
AspA2I CCTAGG 1 cut(s) 421
AspS9I GGNCC 3 cut(s) 167, 197, 590
AvaII GGWCC 1 cut(s) 197
AvrII CCTAGG 1 cut(s) 421
BbvI GCAGC 1 cut(s) 407
BccI CCATC 3 cut(s) 44, 91, 420
BfaI CTAG 3 cut(s) 422, 537, 581
BfmI CTRYAG 1 cut(s) 192
BisI GCNGC 1 cut(s) 396
BlnI CCTAGG 1 cut(s) 421
BlpI GCTNAGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 397
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 3 cut(s) 167, 197, 590
BmiI GGNNCC 1 cut(s) 437
Bpu1102I GCTNAGC 1 cut(s) 123
Bsa29I ATCGAT 1 cut(s) 553
BsaJI CCNNGG 2 cut(s) 128, 421
BsaWI WCCGGW 1 cut(s) 220
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bsc4I CCNNNNNNNGG 1 cut(s) 370
Bse118I RCCGGY 1 cut(s) 220
Bse3DI GCAATG 1 cut(s) 28
BseCI ATCGAT 1 cut(s) 553
BseDI CCNNGG 2 cut(s) 128, 421
BseGI GGATG 3 cut(s) 154, 233, 431
BseLI CCNNNNNNNGG 1 cut(s) 370
BseMI GCAATG 1 cut(s) 28
BseMII CTCAG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 407
BshFI GGCC 2 cut(s) 169, 592
BshTI ACCGGT 1 cut(s) 220
BshVI ATCGAT 1 cut(s) 553
BsiSI CCGG 1 cut(s) 221
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 370
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 2 cut(s) 169, 592
Bsp143I GATC 2 cut(s) 151, 554
Bsp1720I GCTNAGC 1 cut(s) 123
BspANI GGCC 2 cut(s) 169, 592
BspCNI CTCAG 1 cut(s) 136
BspDI ATCGAT 1 cut(s) 553
BspLI GGNNCC 1 cut(s) 437
BspPI GGATC 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 28
BsrFI RCCGGY 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 2 cut(s) 128, 421
BssMI GATC 2 cut(s) 151, 554
BssT1I CCWWGG 1 cut(s) 421
Bst4CI ACNGT 2 cut(s) 73, 617
Bst6I CTCTTC 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 3 cut(s) 154, 233, 431
BstKTI GATC 2 cut(s) 154, 557
BstMBI GATC 2 cut(s) 151, 554
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 407
Bsu15I ATCGAT 1 cut(s) 553
BsuRI GGCC 2 cut(s) 169, 592
BsuTUI ATCGAT 1 cut(s) 553
BtsCI GGATG 3 cut(s) 154, 233, 431
Cfr10I RCCGGY 1 cut(s) 220
Cfr13I GGNCC 3 cut(s) 167, 197, 590
ClaI ATCGAT 1 cut(s) 553
CspAI ACCGGT 1 cut(s) 220
CviAII CATG 2 cut(s) 107, 296
CviJI RGCY 6 cut(s) 82, 127, 169, 275, 592, 632
CviKI_1 RGCY 6 cut(s) 82, 127, 169, 275, 592, 632
DdeI CTNAG 1 cut(s) 123
DpnI GATC 2 cut(s) 153, 556
DpnII GATC 2 cut(s) 151, 554
DraI TTTAAA 2 cut(s) 13, 37
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 421
Eco47I GGWCC 1 cut(s) 197
Eco57I CTGAAG 2 cut(s) 128, 192
EcoO109I RGGNCCY 1 cut(s) 197
EcoT14I CCWWGG 1 cut(s) 421
ErhI CCWWGG 1 cut(s) 421
FaeI CATG 2 cut(s) 110, 299
FaqI GGGAC 1 cut(s) 173
FatI CATG 2 cut(s) 106, 295
Fnu4HI GCNGC 1 cut(s) 396
FokI GGATG 3 cut(s) 161, 220, 438
Fsp4HI GCNGC 1 cut(s) 396
FspBI CTAG 3 cut(s) 422, 537, 581
GluI GCNGC 1 cut(s) 396
HaeIII GGCC 2 cut(s) 169, 592
HapII CCGG 1 cut(s) 221
Hin1II CATG 2 cut(s) 110, 299
HinfI GANTC 2 cut(s) 357, 550
HpaII CCGG 1 cut(s) 221
Hpy166II GTNNAC 2 cut(s) 69, 140
Hpy188III TCNNGA 2 cut(s) 146, 537
Hpy8I GTNNAC 2 cut(s) 69, 140
HpyCH4III ACNGT 2 cut(s) 73, 617
HpyCH4V TGCA 5 cut(s) 21, 204, 379, 395, 610
HpyF3I CTNAG 1 cut(s) 123
Hsp92II CATG 2 cut(s) 110, 299
Kzo9I GATC 2 cut(s) 151, 554
LpnPI CCDG 4 cut(s) 131, 183, 234, 365
Lsp1109I GCAGC 1 cut(s) 407
MaeI CTAG 3 cut(s) 422, 537, 581
MaeIII GTNAC 3 cut(s) 223, 245, 559
MalI GATC 2 cut(s) 153, 556
MboI GATC 2 cut(s) 151, 554
MboII GAAGA 3 cut(s) 185, 335, 395
MluCI AATT 7 cut(s) 38, 61, 87, 206, 285, 374, 605
MmeI TCCRAC 1 cut(s) 527
MnlI CCTC 2 cut(s) 123, 581
MseI TTAA 4 cut(s) 12, 36, 57, 600
MspA1I CMGCKG 1 cut(s) 632
MspI CCGG 1 cut(s) 221
NdeII GATC 2 cut(s) 151, 554
NlaIII CATG 2 cut(s) 110, 299
NlaIV GGNNCC 1 cut(s) 437
NmeAIII GCCGAG 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 357, 550
PinAI ACCGGT 1 cut(s) 220
PkrI GCNGC 1 cut(s) 397
PpuMI RGGWCCY 1 cut(s) 197
Psp5II RGGWCCY 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 437
PspPI GGNCC 3 cut(s) 167, 197, 590
PspPPI RGGWCCY 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 632
SaqAI TTAA 4 cut(s) 12, 36, 57, 600
SatI GCNGC 1 cut(s) 396
Sau3AI GATC 2 cut(s) 151, 554
Sau96I GGNCC 3 cut(s) 167, 197, 590
SetI ASST 8 cut(s) 199, 265, 277, 348, 423, 497, 634, 644
SfcI CTRYAG 1 cut(s) 192
SinI GGWCC 1 cut(s) 197
Sse9I AATT 7 cut(s) 38, 61, 87, 206, 285, 374, 605
SspI AATATT 1 cut(s) 182
SspMI CTAG 3 cut(s) 422, 537, 581
StyI CCWWGG 1 cut(s) 421
TaaI ACNGT 2 cut(s) 73, 617
TaqI TCGA 4 cut(s) 254, 411, 522, 553
TasI AATT 7 cut(s) 38, 61, 87, 206, 285, 374, 605
TfiI GAWTC 2 cut(s) 357, 550
Tru1I TTAA 4 cut(s) 12, 36, 57, 600
Tru9I TTAA 4 cut(s) 12, 36, 57, 600
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 1 cut(s) 395
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 5 cut(s) 17, 39, 123, 483, 618
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 2 cut(s) 206, 285
XbaI TCTAGA 1 cut(s) 536
XmaJI CCTAGG 1 cut(s) 421
XspI CTAG 3 cut(s) 422, 537, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.