Rh7CG122200

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000392
Physical Location & Seq
Reverse (-)
9411908 .. 9441096
29189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG122200.1

Sequence Viewer

Length: 510 bp
ATGTATCTAGATCATCTTGTTGGAGCTTGTCTGCTGTATGCTGAGAGCTTGCAGGCCAATGCATCAGACCCTGAAGAATTGAGCGTGAAGTGGACCGACTTCCCTAATGATTTTGTTTTTGGAGTCGGCACTTCCGCTGCTCAGATTGAAGGATCAGCAAAAGAAGCAGGAAAAGGACCAAGTGTTTGGGACAAGATTGTTGAGGTCCGTGAGAGGATTATGGATAAATCTAACATGTTTACAAGCATCGATTCATACAAGCGATACAAGGAAGATGTGAAGTTAGTGGAAAAAAAAAAAACCTTGGAGTTGATTCTTATAGATTTTTTATCTCCTGGACAAGGATTCTTCCAAGCCAAACAAGGTGGACAAATTGGATGGTGTCTTGTAGCTCAGTATGTTGAGCCTTATTCAGATACAACAGAAGACAAAGCTGCAGCAAAAAGAATGTTAGACTTCGAACTTGGATGGTTAGCGATATCCACTTTGAATCCAAGTTTACTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

169

Amino Acids

18.83

Weight (kDa)

4.78

Isoelectric Point (pI)

36.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 33 - 98 2.2e-18 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 135
AclWI GGATC 1 cut(s) 160
AcuI CTGAAG 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 341
AflIII ACRYGT 1 cut(s) 234
AgsI TTSAA 2 cut(s) 149, 490
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 4 cut(s) 26, 48, 392, 434
AluI AGCT 4 cut(s) 26, 48, 392, 434
AlwI GGATC 1 cut(s) 160
AlwNI CAGNNNCTG 1 cut(s) 71
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 3 cut(s) 137, 434, 437
ArsI GACNNNNNNTTYG 2 cut(s) 168, 200
AspS9I GGNCC 3 cut(s) 93, 176, 205
AsuII TTCGAA 1 cut(s) 459
AvaII GGWCC 3 cut(s) 93, 176, 205
BbsI GAAGAC 1 cut(s) 432
BbvI GCAGC 3 cut(s) 124, 421, 449
BccI CCATC 2 cut(s) 372, 462
BciT130I CCWGG 1 cut(s) 336
BfaI CTAG 1 cut(s) 8
BfmI CTRYAG 1 cut(s) 435
BisI GCNGC 3 cut(s) 138, 435, 438
BlsI GCNGC 3 cut(s) 139, 436, 439
Bme1390I CCNGG 1 cut(s) 336
Bme18I GGWCC 3 cut(s) 93, 176, 205
BmgT120I GGNCC 3 cut(s) 93, 176, 205
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 2 cut(s) 71, 255
BpiI GAAGAC 1 cut(s) 432
Bpu14I TTCGAA 1 cut(s) 459
Bsa29I ATCGAT 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 303
Bsc4I CCNNNNNNNGG 1 cut(s) 341
BseBI CCWGG 1 cut(s) 336
BseCI ATCGAT 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 2 cut(s) 383, 473
BseLI CCNNNNNNNGG 1 cut(s) 341
BseMII CTCAG 3 cut(s) 33, 155, 407
BseXI GCAGC 3 cut(s) 124, 421, 449
BshFI GGCC 1 cut(s) 56
BshVI ATCGAT 1 cut(s) 249
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 1 cut(s) 56
Bsp119I TTCGAA 1 cut(s) 459
Bsp143I GATC 2 cut(s) 10, 152
BspACI CCGC 1 cut(s) 135
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 3 cut(s) 34, 154, 406
BspDI ATCGAT 1 cut(s) 249
BspMAI CTGCAG 1 cut(s) 439
BspPI GGATC 1 cut(s) 160
BspT104I TTCGAA 1 cut(s) 459
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 2 cut(s) 10, 152
BssT1I CCWWGG 1 cut(s) 303
Bst2UI CCWGG 1 cut(s) 336
BstBI TTCGAA 1 cut(s) 459
BstC8I GCNNGC 2 cut(s) 50, 54
BstDEI CTNAG 3 cut(s) 42, 141, 393
BstENI CCTNNNNNAGG 1 cut(s) 339
BstF5I GGATG 2 cut(s) 383, 473
BstKTI GATC 2 cut(s) 13, 155
BstMBI GATC 2 cut(s) 10, 152
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNI CCWGG 1 cut(s) 336
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 334
BstSFI CTRYAG 1 cut(s) 435
BstV1I GCAGC 3 cut(s) 124, 421, 449
BstV2I GAAGAC 1 cut(s) 432
BstXI CCANNNNNNTGG 1 cut(s) 186
Bsu15I ATCGAT 1 cut(s) 249
BsuRI GGCC 1 cut(s) 56
BsuTUI ATCGAT 1 cut(s) 249
BtsCI GGATG 2 cut(s) 383, 473
Cac8I GCNNGC 2 cut(s) 50, 54
CaiI CAGNNNCTG 1 cut(s) 71
Cfr13I GGNCC 3 cut(s) 93, 176, 205
ClaI ATCGAT 1 cut(s) 249
CspCI CAANNNNNGTGG 2 cut(s) 346, 381
CviAII CATG 1 cut(s) 235
CviJI RGCY 7 cut(s) 26, 48, 56, 356, 392, 406, 434
CviKI_1 RGCY 7 cut(s) 26, 48, 56, 356, 392, 406, 434
DdeI CTNAG 3 cut(s) 42, 141, 393
DpnI GATC 2 cut(s) 12, 154
DpnII GATC 2 cut(s) 10, 152
Eco130I CCWWGG 1 cut(s) 303
Eco32I GATATC 1 cut(s) 480
Eco47I GGWCC 3 cut(s) 93, 176, 205
Eco57I CTGAAG 1 cut(s) 93
EcoNI CCTNNNNNAGG 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 334
EcoRV GATATC 1 cut(s) 480
EcoT14I CCWWGG 1 cut(s) 303
EcoT22I ATGCAT 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 1 cut(s) 238
FaiI YATR 6 cut(s) 39, 221, 236, 256, 320, 399
FaqI GGGAC 1 cut(s) 203
FatI CATG 1 cut(s) 234
Fnu4HI GCNGC 3 cut(s) 138, 435, 438
FokI GGATG 2 cut(s) 390, 480
Fsp4HI GCNGC 3 cut(s) 138, 435, 438
FspBI CTAG 1 cut(s) 8
GluI GCNGC 3 cut(s) 138, 435, 438
HaeIII GGCC 1 cut(s) 56
Hin1II CATG 1 cut(s) 238
HinfI GANTC 5 cut(s) 123, 251, 313, 345, 490
Hpy166II GTNNAC 4 cut(s) 93, 240, 368, 500
Hpy188I TCNGA 3 cut(s) 67, 144, 415
Hpy188III TCNNGA 1 cut(s) 8
Hpy8I GTNNAC 4 cut(s) 93, 240, 368, 500
HpyAV CCTTC 1 cut(s) 143
HpyCH4V TGCA 3 cut(s) 52, 62, 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 3 cut(s) 42, 141, 393
Hsp92II CATG 1 cut(s) 238
Kzo9I GATC 2 cut(s) 10, 152
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 5 cut(s) 38, 84, 153, 321, 348
Lsp1109I GCAGC 3 cut(s) 124, 421, 449
LweI GCATC 2 cut(s) 71, 255
MaeI CTAG 1 cut(s) 8
MalI GATC 2 cut(s) 12, 154
MboI GATC 2 cut(s) 10, 152
MboII GAAGA 4 cut(s) 86, 284, 340, 437
MluCI AATT 2 cut(s) 77, 372
MlyI GAGTC 1 cut(s) 132
MnlI CCTC 2 cut(s) 196, 207
Mph1103I ATGCAT 1 cut(s) 64
MspA1I CMGCKG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 336
MvaI CCWGG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeII GATC 2 cut(s) 10, 152
NlaIII CATG 1 cut(s) 238
NsiI ATGCAT 1 cut(s) 64
NspI RCATGY 1 cut(s) 238
NspV TTCGAA 1 cut(s) 459
PciI ACATGT 1 cut(s) 234
PfeI GAWTC 4 cut(s) 251, 313, 345, 490
PfoI TCCNGGA 1 cut(s) 334
PkrI GCNGC 3 cut(s) 139, 436, 439
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PscI ACATGT 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspPI GGNCC 3 cut(s) 93, 176, 205
PstI CTGCAG 1 cut(s) 439
PstNI CAGNNNCTG 1 cut(s) 71
SatI GCNGC 3 cut(s) 138, 435, 438
Sau3AI GATC 2 cut(s) 10, 152
Sau96I GGNCC 3 cut(s) 93, 176, 205
SchI GAGTC 1 cut(s) 132
ScrFI CCNGG 1 cut(s) 336
SetI ASST 7 cut(s) 28, 50, 207, 305, 367, 394, 436
SfaNI GCATC 2 cut(s) 71, 255
SfcI CTRYAG 1 cut(s) 435
SfuI TTCGAA 1 cut(s) 459
SinI GGWCC 3 cut(s) 93, 176, 205
Sse9I AATT 2 cut(s) 77, 372
SsiI CCGC 1 cut(s) 135
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 334
StyI CCWWGG 1 cut(s) 303
TaqI TCGA 2 cut(s) 249, 459
TaqII GACCGA 1 cut(s) 110
TasI AATT 2 cut(s) 77, 372
TfiI GAWTC 4 cut(s) 251, 313, 345, 490
TseI GCWGC 3 cut(s) 137, 434, 437
TspDTI ATGAA 1 cut(s) 243
TspGWI ACGGA 1 cut(s) 197
VpaK11BI GGWCC 3 cut(s) 93, 176, 205
XagI CCTNNNNNAGG 1 cut(s) 339
XbaI TCTAGA 1 cut(s) 7
XceI RCATGY 1 cut(s) 238
XspI CTAG 1 cut(s) 8
Zsp2I ATGCAT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.