Rmu_co8005672.1_g000001

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8005672.1
OG0000392
Physical Location & Seq
Reverse (-)
1 .. 263
263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8005672.1_g000001.1.cds

Sequence Viewer

Length: 240 bp
atggcttcatcaacagagttttcctatgttctcattgtggtttttgcgatggcttccatagcctgctggcctgtcgaggctaatttggaaggcgtggttccaactgcggagtatttgacagtaggcggattgactttcggattgaatttaagcagtccatcatatctcgaagaactgaatgttacgaaatcagacttcccaactgatttcgcttttggagttggtacctctgctggacag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

80

Amino Acids

8.42

Weight (kDa)

4.05

Isoelectric Point (pI)

43.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 224
AccB1I GGYRCC 1 cut(s) 224
AciI CCGC 2 cut(s) 107, 126
AcsI RAATTY 1 cut(s) 145
AfaI GTAC 1 cut(s) 226
AgsI TTSAA 1 cut(s) 145
AoxI GGCC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 145
Asp718I GGTACC 1 cut(s) 224
BanI GGYRCC 1 cut(s) 224
BccI CCATC 2 cut(s) 43, 166
BmiI GGNNCC 2 cut(s) 99, 226
BshFI GGCC 1 cut(s) 70
BshNI GGYRCC 1 cut(s) 224
BsnI GGCC 1 cut(s) 70
BspACI CCGC 2 cut(s) 107, 126
BspANI GGCC 1 cut(s) 70
BspLI GGNNCC 2 cut(s) 99, 226
BspT107I GGYRCC 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 121
BstC8I GCNNGC 2 cut(s) 64, 68
BstMWI GCNNNNNNNGC 1 cut(s) 59
BsuRI GGCC 1 cut(s) 70
BtgZI GCGATG 1 cut(s) 62
Cac8I GCNNGC 2 cut(s) 64, 68
Csp6I GTAC 1 cut(s) 225
CviJI RGCY 5 cut(s) 5, 53, 62, 70, 80
CviKI_1 RGCY 5 cut(s) 5, 53, 62, 70, 80
CviQI GTAC 1 cut(s) 225
EciI GGCGGA 1 cut(s) 141
FaiI YATR 3 cut(s) 27, 59, 163
HaeIII GGCC 1 cut(s) 70
Hpy188I TCNGA 2 cut(s) 140, 193
Hpy188III TCNNGA 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 121
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
KpnI GGTACC 1 cut(s) 228
LpnPI CCDG 4 cut(s) 52, 76, 84, 219
MaeIII GTNAC 1 cut(s) 181
MboII GAAGA 1 cut(s) 182
MluCI AATT 2 cut(s) 82, 145
MmeI TCCRAC 1 cut(s) 125
MnlI CCTC 2 cut(s) 70, 238
MseI TTAA 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 59
NlaIV GGNNCC 2 cut(s) 99, 226
PspN4I GGNNCC 2 cut(s) 99, 226
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
SaqAI TTAA 1 cut(s) 149
SetI ASST 1 cut(s) 230
SgeI CNNG 6 cut(s) 75, 79, 83, 88, 106, 179
Sse9I AATT 2 cut(s) 82, 145
SsiI CCGC 2 cut(s) 107, 126
TaaI ACNGT 1 cut(s) 121
TaqI TCGA 2 cut(s) 75, 168
TasI AATT 2 cut(s) 82, 145
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
XapI RAATTY 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.