RchiOBHm_Chr7g0191251

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000392
Physical Location & Seq
Reverse (-)
10034828 .. 10035287
460 bp
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UTR
Exon/CDS
Intron
PRQ17089

Sequence Viewer

Length: 240 bp
ATGAAACAAGCTGAAGGAAGCATCTACATCTTCTCTTATCCACAAGGTCTTCAAAAACTTTTGGAGTTCATGAAGCAAAACTACCAAAGTCCTAAAATCTACATAACTGAAAATGGAATTACAGAGGCAAAGAACGTTACTCTCGGACTCGATGTAGTACTCAAGGATCCACATAGAATTGAATGCATTCTTCGACACTTGTACAGGATCAAAATGGCAATGAAGCAAGTCATCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

79

Amino Acids

9.27

Weight (kDa)

9.34

Isoelectric Point (pI)

57.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 9 - 76 1.1e-11 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 135
AclWI GGATC 3 cut(s) 161, 174, 215
AcuI CTGAAG 1 cut(s) 33
AfaI GTAC 2 cut(s) 159, 203
AgsI TTSAA 2 cut(s) 53, 182
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
AlwI GGATC 3 cut(s) 161, 174, 215
Asp700I GAANNNNTTC 1 cut(s) 186
BamHI GGATCC 1 cut(s) 166
BarI GAAGNNNNNNTAC 2 cut(s) 65, 97
BbsI GAAGAC 1 cut(s) 41
BmcAI AGTACT 1 cut(s) 159
BmiI GGNNCC 1 cut(s) 168
BmsI GCATC 1 cut(s) 30
BpiI GAAGAC 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 146
Bse3DI GCAATG 1 cut(s) 225
BseGI GGATG 1 cut(s) 231
BseMI GCAATG 1 cut(s) 225
BsmI GAATGC 2 cut(s) 186, 188
Bsp1407I TGTACA 1 cut(s) 201
Bsp143I GATC 2 cut(s) 166, 207
BspHI TCATGA 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 168
BspPI GGATC 3 cut(s) 161, 174, 215
BsrDI GCAATG 1 cut(s) 225
BsrGI TGTACA 1 cut(s) 201
BssMI GATC 2 cut(s) 166, 207
BstAUI TGTACA 1 cut(s) 201
BstF5I GGATG 1 cut(s) 231
BstKTI GATC 2 cut(s) 169, 210
BstMBI GATC 2 cut(s) 166, 207
BstV2I GAAGAC 1 cut(s) 41
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BtsCI GGATG 1 cut(s) 231
CciI TCATGA 1 cut(s) 69
Csp6I GTAC 2 cut(s) 158, 202
CviAII CATG 1 cut(s) 70
CviJI RGCY 1 cut(s) 11
CviKI_1 RGCY 1 cut(s) 11
CviQI GTAC 2 cut(s) 158, 202
DpnI GATC 2 cut(s) 168, 209
DpnII GATC 2 cut(s) 166, 207
Eco57I CTGAAG 1 cut(s) 33
EcoT22I ATGCAT 1 cut(s) 188
FaeI CATG 1 cut(s) 73
FaiI YATR 3 cut(s) 71, 104, 174
FatI CATG 1 cut(s) 69
FokI GGATG 1 cut(s) 218
Hin1II CATG 1 cut(s) 73
HinfI GANTC 1 cut(s) 147
Hpy188I TCNGA 1 cut(s) 146
Hpy188III TCNNGA 1 cut(s) 70
HpyAV CCTTC 1 cut(s) 8
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 1 cut(s) 186
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 1 cut(s) 73
Kzo9I GATC 2 cut(s) 166, 207
LpnPI CCDG 1 cut(s) 190
LweI GCATC 1 cut(s) 30
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 136
MalI GATC 2 cut(s) 168, 209
MboI GATC 2 cut(s) 166, 207
MboII GAAGA 3 cut(s) 22, 41, 182
MflI RGATCY 1 cut(s) 166
MluCI AATT 2 cut(s) 117, 177
MlyI GAGTC 1 cut(s) 141
MnlI CCTC 1 cut(s) 118
Mph1103I ATGCAT 1 cut(s) 188
MroXI GAANNNNTTC 1 cut(s) 186
Mva1269I GAATGC 2 cut(s) 186, 188
NdeII GATC 2 cut(s) 166, 207
NlaIII CATG 1 cut(s) 73
NlaIV GGNNCC 1 cut(s) 168
NsiI ATGCAT 1 cut(s) 188
PagI TCATGA 1 cut(s) 69
PctI GAATGC 2 cut(s) 186, 188
PdmI GAANNNNTTC 1 cut(s) 186
PleI GAGTC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 141
Psp1406I AACGTT 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 168
PsuI RGATCY 1 cut(s) 166
RsaI GTAC 2 cut(s) 159, 203
RsaNI GTAC 2 cut(s) 158, 202
Sau3AI GATC 2 cut(s) 166, 207
ScaI AGTACT 1 cut(s) 159
SchI GAGTC 1 cut(s) 141
SetI ASST 3 cut(s) 13, 49, 138
SfaNI GCATC 1 cut(s) 30
SgeI CNNG 8 cut(s) 20, 56, 82, 155, 161, 175, 211, 217
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 2 cut(s) 117, 177
TaiI ACGT 1 cut(s) 138
TaqI TCGA 2 cut(s) 150, 193
TasI AATT 2 cut(s) 117, 177
TatI WGTACW 2 cut(s) 157, 201
TspDTI ATGAA 4 cut(s) 17, 58, 86, 236
XmnI GAANNNNTTC 1 cut(s) 186
ZrmI AGTACT 1 cut(s) 159
Zsp2I ATGCAT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.