MD06G1146100.v1.1

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000392
Physical Location & Seq
Forward (+)
28850286 .. 28851034
749 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1146100.v1.1.491

Sequence Viewer

Length: 360 bp
ATGGCTCGTGGTCTCATTGCCATTTGTCTCATCACTTTGCTAGCCTGTTCATCTGTGGAAGGTCGAGGCCTAGAACTAGCACATTTAAATGGAGCTGAACATCAGTCCGTGGGGGATCATGTTCACGGAGTTGTAGAAAATGTGACAGTGGGTGGATTCAACCTTCAGTTAAATTTAAGCAACCCTAAACTTGTTGAAGAACTGAAAATTAAACGATCAGACTTTCCATCCGATTTTATGTTTGGAGCCGCCACTTCTGCTGCACAGAGCGAAGGGTCAGCCAAAGAAGGAGGGAGAGGACCAAGTGGTTGGGATCATCGCATGGAAACACTCCAAGGTTTACATAACCTTAACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

120

Amino Acids

12.65

Weight (kDa)

6.03

Isoelectric Point (pI)

39.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 73 - 110 4.3e-09 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 249
AclWI GGATC 2 cut(s) 123, 321
AcsI RAATTY 1 cut(s) 172
AcuI CTGAAG 1 cut(s) 149
AgsI TTSAA 2 cut(s) 160, 197
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Alw26I GTCTC 2 cut(s) 17, 32
AlwI GGATC 2 cut(s) 123, 321
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 1 cut(s) 260
ApoI RAATTY 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 299
AsuNHI GCTAGC 1 cut(s) 40
AvaII GGWCC 1 cut(s) 299
BauI CACGAG 1 cut(s) 6
BbvI GCAGC 1 cut(s) 247
BccI CCATC 1 cut(s) 235
BcoDI GTCTC 2 cut(s) 17, 32
BfaI CTAG 3 cut(s) 41, 71, 77
BisI GCNGC 2 cut(s) 249, 261
BlsI GCNGC 2 cut(s) 250, 262
Bme18I GGWCC 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 299
BmiI GGNNCC 1 cut(s) 247
BmtI GCTAGC 1 cut(s) 44
BsaI GGTCTC 1 cut(s) 17
BsaJI CCNNGG 2 cut(s) 108, 334
Bse3DI GCAATG 1 cut(s) 15
BseDI CCNNGG 2 cut(s) 108, 334
BseGI GGATG 1 cut(s) 227
BseMI GCAATG 1 cut(s) 15
BseXI GCAGC 1 cut(s) 247
BsgI GTGCAG 1 cut(s) 246
BshFI GGCC 1 cut(s) 69
BsmAI GTCTC 2 cut(s) 17, 32
BsnI GGCC 1 cut(s) 69
Bso31I GGTCTC 1 cut(s) 17
Bsp143I GATC 3 cut(s) 115, 215, 313
BspACI CCGC 1 cut(s) 249
BspANI GGCC 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 247
BspOI GCTAGC 1 cut(s) 44
BspPI GGATC 2 cut(s) 123, 321
BspTNI GGTCTC 1 cut(s) 17
BsrDI GCAATG 1 cut(s) 15
BssECI CCNNGG 2 cut(s) 108, 334
BssMI GATC 3 cut(s) 115, 215, 313
BssSI CACGAG 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 334
Bst2BI CACGAG 1 cut(s) 6
Bst4CI ACNGT 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 42
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 227
BstKTI GATC 3 cut(s) 118, 218, 316
BstMAI GTCTC 2 cut(s) 17, 32
BstMBI GATC 3 cut(s) 115, 215, 313
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstV1I GCAGC 1 cut(s) 247
BstXI CCANNNNNNTGG 1 cut(s) 309
BsuRI GGCC 1 cut(s) 69
BtgI CCRYGG 1 cut(s) 108
BtgZI GCGATG 1 cut(s) 302
BtsCI GGATG 1 cut(s) 227
BtsIMutI CAGTG 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 299
CviAII CATG 2 cut(s) 119, 322
CviJI RGCY 6 cut(s) 5, 44, 69, 95, 248, 281
CviKI_1 RGCY 6 cut(s) 5, 44, 69, 95, 248, 281
DpnI GATC 3 cut(s) 117, 217, 315
DpnII GATC 3 cut(s) 115, 215, 313
DraI TTTAAA 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 334
Eco147I AGGCCT 1 cut(s) 69
Eco31I GGTCTC 1 cut(s) 17
Eco47I GGWCC 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 334
ErhI CCWWGG 1 cut(s) 334
FaeI CATG 2 cut(s) 122, 325
FaiI YATR 4 cut(s) 120, 239, 323, 345
FatI CATG 2 cut(s) 118, 321
Fnu4HI GCNGC 2 cut(s) 249, 261
FokI GGATG 1 cut(s) 214
Fsp4HI GCNGC 2 cut(s) 249, 261
FspBI CTAG 3 cut(s) 41, 71, 77
GluI GCNGC 2 cut(s) 249, 261
HaeIII GGCC 1 cut(s) 69
Hin1II CATG 2 cut(s) 122, 325
HinfI GANTC 1 cut(s) 156
Hpy166II GTNNAC 2 cut(s) 124, 341
Hpy188I TCNGA 2 cut(s) 220, 232
Hpy8I GTNNAC 2 cut(s) 124, 341
HpyAV CCTTC 4 cut(s) 53, 173, 266, 281
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 1 cut(s) 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
Hsp92II CATG 2 cut(s) 122, 325
Kzo9I GATC 3 cut(s) 115, 215, 313
LmnI GCTCC 2 cut(s) 92, 245
LpnPI CCDG 1 cut(s) 58
Lsp1109I GCAGC 1 cut(s) 247
MaeI CTAG 3 cut(s) 41, 71, 77
MaeIII GTNAC 1 cut(s) 142
MalI GATC 3 cut(s) 117, 217, 315
MboI GATC 3 cut(s) 115, 215, 313
MboII GAAGA 1 cut(s) 209
MluCI AATT 2 cut(s) 172, 207
MnlI CCTC 3 cut(s) 59, 284, 290
MseI TTAA 5 cut(s) 86, 170, 176, 210, 351
MslI CAYNNNNRTG 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 257
NdeII GATC 3 cut(s) 115, 215, 313
NheI GCTAGC 1 cut(s) 40
NlaIII CATG 2 cut(s) 122, 325
NlaIV GGNNCC 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 142
PceI AGGCCT 1 cut(s) 69
PfeI GAWTC 1 cut(s) 156
PkrI GCNGC 2 cut(s) 250, 262
PspN4I GGNNCC 1 cut(s) 247
PspPI GGNCC 1 cut(s) 299
RseI CAYNNNNRTG 1 cut(s) 87
SaqAI TTAA 5 cut(s) 86, 170, 176, 210, 351
SatI GCNGC 2 cut(s) 249, 261
Sau3AI GATC 3 cut(s) 115, 215, 313
Sau96I GGNCC 1 cut(s) 299
SetI ASST 5 cut(s) 64, 97, 165, 340, 351
SinI GGWCC 1 cut(s) 299
SmiI ATTTAAAT 1 cut(s) 87
SmiMI CAYNNNNRTG 1 cut(s) 87
Sse9I AATT 2 cut(s) 172, 207
SseBI AGGCCT 1 cut(s) 69
SsiI CCGC 1 cut(s) 249
SspMI CTAG 3 cut(s) 41, 71, 77
StuI AGGCCT 1 cut(s) 69
StyI CCWWGG 1 cut(s) 334
SwaI ATTTAAAT 1 cut(s) 87
TaaI ACNGT 1 cut(s) 148
TaqI TCGA 1 cut(s) 64
TasI AATT 2 cut(s) 172, 207
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 5 cut(s) 86, 170, 176, 210, 351
Tru9I TTAA 5 cut(s) 86, 170, 176, 210, 351
TscAI CASTG 1 cut(s) 153
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 1 cut(s) 260
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 39
TspGWI ACGGA 2 cut(s) 97, 141
TspRI CASTG 1 cut(s) 153
VpaK11BI GGWCC 1 cut(s) 299
XapI RAATTY 1 cut(s) 172
XspI CTAG 3 cut(s) 41, 71, 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.