Rroxscaffold_1G00024050

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000392
Physical Location & Seq
Reverse (-)
29772159 .. 29787007
14849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00024050.1

Sequence Viewer

Length: 309 bp
ATGGCTTTAATACCCTGCATGCCTATCGAGGCTACTACAAGTTTGAATGGTATGGTTTCAGTTGTGGCGAATATGACAATAGGCAGATTGACTTTCATATTGAATTTATTTAGTACTTCATTTCTCAAAGAAATGAATGTTATGAAATCGACATCCCAACTGAGTTTTCTTTTGGAGTGGCTACCTCTACTGCACCAGATTGAAGAGGCAGCCAAACAATTTGGGAGAGGAACAAGTACATGGGATCATCGCGTTGATATATACTCCCACGTAGTATTCAAAACAACGACAATTCTCTATAGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

102

Amino Acids

11.53

Weight (kDa)

6.82

Isoelectric Point (pI)

30.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 252
AclWI GGATC 1 cut(s) 252
AcsI RAATTY 1 cut(s) 103
AfaI GTAC 2 cut(s) 115, 238
AgsI TTSAA 4 cut(s) 46, 103, 203, 280
AjuI GAANNNNNNNTTGG 2 cut(s) 150, 182
AlwI GGATC 1 cut(s) 252
ApeKI GCWGC 1 cut(s) 209
ApoI RAATTY 1 cut(s) 103
BbvI GCAGC 1 cut(s) 221
BcgI CGANNNNNNTGC 2 cut(s) 7, 41
BfmI CTRYAG 1 cut(s) 298
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
BmcAI AGTACT 1 cut(s) 115
BsaAI YACGTR 1 cut(s) 271
BseGI GGATG 1 cut(s) 152
BseMII CTCAG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 221
BsgI GTGCAG 1 cut(s) 176
Bsh1236I CGCG 1 cut(s) 252
Bsp143I GATC 1 cut(s) 244
BspCNI CTCAG 1 cut(s) 153
BspFNI CGCG 1 cut(s) 252
BspPI GGATC 1 cut(s) 252
BssMI GATC 1 cut(s) 244
Bst6I CTCTTC 1 cut(s) 198
BstBAI YACGTR 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 20
BstDEI CTNAG 1 cut(s) 161
BstF5I GGATG 1 cut(s) 152
BstFNI CGCG 1 cut(s) 252
BstKTI GATC 1 cut(s) 247
BstMBI GATC 1 cut(s) 244
BstNSI RCATGY 1 cut(s) 22
BstSFI CTRYAG 1 cut(s) 298
BstUI CGCG 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 221
BtgZI GCGATG 1 cut(s) 233
BtsCI GGATG 1 cut(s) 152
Cac8I GCNNGC 1 cut(s) 20
Csp6I GTAC 2 cut(s) 114, 237
CviAII CATG 2 cut(s) 19, 240
CviJI RGCY 4 cut(s) 5, 32, 181, 212
CviKI_1 RGCY 4 cut(s) 5, 32, 181, 212
CviQI GTAC 2 cut(s) 114, 237
DdeI CTNAG 1 cut(s) 161
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
FaeI CATG 2 cut(s) 22, 243
FaiI YATR 9 cut(s) 20, 53, 74, 98, 143, 241, 260, 262, 300
FatI CATG 2 cut(s) 18, 239
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 1 cut(s) 139
Fsp4HI GCNGC 1 cut(s) 210
GluI GCNGC 1 cut(s) 210
Hin1II CATG 2 cut(s) 22, 243
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 2 cut(s) 18, 193
HpyF3I CTNAG 1 cut(s) 161
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 2 cut(s) 22, 243
Kzo9I GATC 1 cut(s) 244
LpnPI CCDG 2 cut(s) 28, 209
Lsp1109I GCAGC 1 cut(s) 221
MaeII ACGT 1 cut(s) 270
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 1 cut(s) 215
MfeI CAATTG 1 cut(s) 304
MluCI AATT 4 cut(s) 103, 218, 291, 304
MnlI CCTC 4 cut(s) 22, 195, 199, 221
MseI TTAA 1 cut(s) 8
MunI CAATTG 1 cut(s) 304
MvnI CGCG 1 cut(s) 252
NdeII GATC 1 cut(s) 244
NlaIII CATG 2 cut(s) 22, 243
NspI RCATGY 1 cut(s) 22
PaeI GCATGC 1 cut(s) 22
PkrI GCNGC 1 cut(s) 211
Ppu21I YACGTR 1 cut(s) 271
RsaI GTAC 2 cut(s) 115, 238
RsaNI GTAC 2 cut(s) 114, 237
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 1 cut(s) 244
ScaI AGTACT 1 cut(s) 115
SetI ASST 2 cut(s) 187, 273
SfcI CTRYAG 1 cut(s) 298
SgeI CNNG 9 cut(s) 27, 31, 40, 51, 208, 246, 252, 263, 281
SphI GCATGC 1 cut(s) 22
Sse9I AATT 4 cut(s) 103, 218, 291, 304
TaiI ACGT 1 cut(s) 273
TaqI TCGA 2 cut(s) 27, 149
TasI AATT 4 cut(s) 103, 218, 291, 304
TatI WGTACW 2 cut(s) 113, 236
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 4 cut(s) 85, 108, 149, 158
XapI RAATTY 1 cut(s) 103
XceI RCATGY 1 cut(s) 22
ZrmI AGTACT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.