Rh7CG117600

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Reverse (-)
9006679 .. 9009374
2696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG117600.1

Sequence Viewer

Length: 684 bp
ATGGCTTCATCAACAGAGTTTTCCTATGCTCTCATTGTGGTCTTTGCGATGGCTTCCATAGCCTGCTGGCCTGTCGAGGCTAATTTGGACGGCGTGGTTCCAACTGCGGAGAATTTGACAATAGGCGGATTGACTTTCGGATTGAATTTAAGCAGTCCTTCATATCTCGAAGAACTGAATGTTACGAAATCAGACTTCCCAACTGATTTCGCTTTTGGAGTTGGTACCTCTGCTGGACAGGTTGAAGGGGCAGCGAGAGAATTTGGGAGAGGACCAAGTACATGGGATCATCGCGTTGATACACTCCCTGATGGAAGCTTAAGTGGCGGAATTAACCAGCAGGGTGTTGATCACTATAACAGTTTGATTGACGAATTGATCAAAAATGGACTTAGTACTGAAAGAAATGACGCGCTTGGACTTGCTGATCAATTGAAGGATCCGGAAAGAATTGCGTACATTGTTCGTCATTTGTATCGTCTCAATAAGGCAATCAAGAATGGAGTAAATGTGAAAGGGTACTTCTGCTGGGCGCTATTCGACGATTTTGAATGGGGCATGGGATTTCTGGATAGATTTGGTCTATACCATATCGATTTGATTCACAATTACAAACGCATGCCTAAGCTTTCTGCTACATGGTTCAAAGCTTTCCTTCAAAGCAATGTGAACCGAGCTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

227

Amino Acids

25.1

Weight (kDa)

5.19

Isoelectric Point (pI)

31.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 63 - 97 8.5e-08 Glycosyl hydrolase family 1
Glyco_hydro_1 PF00232 129 - 222 2.5e-23 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 224
AccB1I GGYRCC 1 cut(s) 224
AccII CGCG 2 cut(s) 294, 413
AccIII TCCGGA 1 cut(s) 442
AciI CCGC 3 cut(s) 107, 126, 327
AclWI GGATC 3 cut(s) 294, 434, 447
AcsI RAATTY 3 cut(s) 112, 145, 260
AfaI GTAC 5 cut(s) 226, 280, 397, 458, 521
AflII CTTAAG 1 cut(s) 319
AgsI TTSAA 6 cut(s) 145, 245, 436, 551, 646, 659
AluBI AGCT 5 cut(s) 318, 628, 650, 677, 681
AluI AGCT 5 cut(s) 318, 628, 650, 677, 681
Alw26I GTCTC 1 cut(s) 485
AlwI GGATC 3 cut(s) 294, 434, 447
Aor13HI TCCGGA 1 cut(s) 442
AoxI GGCC 1 cut(s) 68
ApeKI GCWGC 1 cut(s) 251
ApoI RAATTY 3 cut(s) 112, 145, 260
Asp718I GGTACC 1 cut(s) 224
AspLEI GCGC 2 cut(s) 415, 535
AspS9I GGNCC 1 cut(s) 272
AsuNHI GCTAGC 1 cut(s) 677
AvaII GGWCC 1 cut(s) 272
BamHI GGATCC 1 cut(s) 439
BanI GGYRCC 1 cut(s) 224
BbvI GCAGC 1 cut(s) 263
BccI CCATC 2 cut(s) 43, 305
BceAI ACGGC 1 cut(s) 106
BclI TGATCA 3 cut(s) 349, 378, 427
BcoDI GTCTC 1 cut(s) 485
BfaI CTAG 1 cut(s) 678
BfoI RGCGCY 1 cut(s) 536
BfrI CTTAAG 1 cut(s) 319
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
BmcAI AGTACT 1 cut(s) 397
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 3 cut(s) 99, 226, 441
BmtI GCTAGC 1 cut(s) 681
Bpu10I CCTNAGC 1 cut(s) 624
Bsa29I ATCGAT 1 cut(s) 594
BsaWI WCCGGW 1 cut(s) 442
BsaXI ACNNNNNCTCC 2 cut(s) 495, 525
Bse3DI GCAATG 1 cut(s) 670
BseAI TCCGGA 1 cut(s) 442
BseCI ATCGAT 1 cut(s) 594
BseMI GCAATG 1 cut(s) 670
BseXI GCAGC 1 cut(s) 263
BseYI CCCAGC 1 cut(s) 528
Bsh1236I CGCG 2 cut(s) 294, 413
BshFI GGCC 1 cut(s) 70
BshNI GGYRCC 1 cut(s) 224
BshVI ATCGAT 1 cut(s) 594
BsiSI CCGG 1 cut(s) 443
BsmAI GTCTC 1 cut(s) 485
BsmBI CGTCTC 1 cut(s) 485
BsnI GGCC 1 cut(s) 70
Bsp13I TCCGGA 1 cut(s) 442
Bsp143I GATC 5 cut(s) 286, 349, 378, 427, 439
BspACI CCGC 3 cut(s) 107, 126, 327
BspANI GGCC 1 cut(s) 70
BspDI ATCGAT 1 cut(s) 594
BspEI TCCGGA 1 cut(s) 442
BspFNI CGCG 2 cut(s) 294, 413
BspLI GGNNCC 3 cut(s) 99, 226, 441
BspOI GCTAGC 1 cut(s) 681
BspPI GGATC 3 cut(s) 294, 434, 447
BspT107I GGYRCC 1 cut(s) 224
BspTI CTTAAG 1 cut(s) 319
BsrDI GCAATG 1 cut(s) 670
BssMI GATC 5 cut(s) 286, 349, 378, 427, 439
Bst4CI ACNGT 1 cut(s) 362
BstAFI CTTAAG 1 cut(s) 319
BstC8I GCNNGC 4 cut(s) 64, 68, 620, 679
BstDEI CTNAG 2 cut(s) 392, 624
BstFNI CGCG 2 cut(s) 294, 413
BstH2I RGCGCY 1 cut(s) 536
BstHHI GCGC 2 cut(s) 415, 535
BstKTI GATC 5 cut(s) 289, 352, 381, 430, 442
BstMAI GTCTC 1 cut(s) 485
BstMBI GATC 5 cut(s) 286, 349, 378, 427, 439
BstMWI GCNNNNNNNGC 2 cut(s) 59, 324
BstNSI RCATGY 1 cut(s) 622
BstUI CGCG 2 cut(s) 294, 413
BstV1I GCAGC 1 cut(s) 263
BstX2I RGATCY 1 cut(s) 439
BstXI CCANNNNNNTGG 1 cut(s) 282
BstYI RGATCY 1 cut(s) 439
Bsu15I ATCGAT 1 cut(s) 594
BsuRI GGCC 1 cut(s) 70
BsuTUI ATCGAT 1 cut(s) 594
BtgZI GCGATG 2 cut(s) 62, 275
Cac8I GCNNGC 4 cut(s) 64, 68, 620, 679
CfoI GCGC 2 cut(s) 415, 535
Cfr13I GGNCC 1 cut(s) 272
ClaI ATCGAT 1 cut(s) 594
CseI GACGC 1 cut(s) 419
Csp6I GTAC 5 cut(s) 225, 279, 396, 457, 520
CviAII CATG 4 cut(s) 282, 559, 619, 639
CviQI GTAC 5 cut(s) 225, 279, 396, 457, 520
DdeI CTNAG 2 cut(s) 392, 624
DpnI GATC 5 cut(s) 288, 351, 380, 429, 441
DpnII GATC 5 cut(s) 286, 349, 378, 427, 439
EciI GGCGGA 2 cut(s) 141, 342
Eco47I GGWCC 1 cut(s) 272
Esp3I CGTCTC 1 cut(s) 485
FaeI CATG 4 cut(s) 285, 562, 622, 642
FalI AAGNNNNNCTT 4 cut(s) 142, 174, 639, 671
FatI CATG 4 cut(s) 281, 558, 618, 638
FbaI TGATCA 3 cut(s) 349, 378, 427
Fnu4HI GCNGC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 1 cut(s) 678
GlaI GCGC 2 cut(s) 414, 534
GluI GCNGC 1 cut(s) 252
GsaI CCCAGC 1 cut(s) 532
HaeII RGCGCY 1 cut(s) 536
HaeIII GGCC 1 cut(s) 70
HapII CCGG 1 cut(s) 443
HgaI GACGC 1 cut(s) 419
HhaI GCGC 2 cut(s) 415, 535
Hin1II CATG 4 cut(s) 285, 562, 622, 642
Hin6I GCGC 2 cut(s) 413, 533
HinP1I GCGC 2 cut(s) 413, 533
HindIII AAGCTT 3 cut(s) 316, 626, 648
HinfI GANTC 1 cut(s) 601
HpaII CCGG 1 cut(s) 443
Hpy166II GTNNAC 1 cut(s) 670
Hpy188I TCNGA 2 cut(s) 140, 193
Hpy188III TCNNGA 4 cut(s) 167, 443, 496, 569
Hpy8I GTNNAC 1 cut(s) 670
Hpy99I CGWCG 1 cut(s) 545
HpyAV CCTTC 4 cut(s) 168, 239, 430, 665
HpyCH4III ACNGT 1 cut(s) 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 324
HpyF3I CTNAG 2 cut(s) 392, 624
Hsp92II CATG 4 cut(s) 285, 562, 622, 642
HspAI GCGC 2 cut(s) 413, 533
Kpn2I TCCGGA 1 cut(s) 442
KpnI GGTACC 1 cut(s) 228
Ksp22I TGATCA 3 cut(s) 349, 378, 427
Kzo9I GATC 5 cut(s) 286, 349, 378, 427, 439
Lsp1109I GCAGC 1 cut(s) 263
MaeI CTAG 1 cut(s) 678
MaeIII GTNAC 1 cut(s) 181
MalI GATC 5 cut(s) 288, 351, 380, 429, 441
MboI GATC 5 cut(s) 286, 349, 378, 427, 439
MboII GAAGA 1 cut(s) 182
MfeI CAATTG 1 cut(s) 431
MflI RGATCY 1 cut(s) 439
MluCI AATT 9 cut(s) 82, 112, 145, 260, 330, 374, 431, 450, 607
MmeI TCCRAC 1 cut(s) 125
MnlI CCTC 3 cut(s) 70, 238, 263
MroI TCCGGA 1 cut(s) 442
MseI TTAA 3 cut(s) 149, 320, 333
MspCI CTTAAG 1 cut(s) 319
MspI CCGG 1 cut(s) 443
MunI CAATTG 1 cut(s) 431
MvnI CGCG 2 cut(s) 294, 413
MwoI GCNNNNNNNGC 2 cut(s) 59, 324
NdeII GATC 5 cut(s) 286, 349, 378, 427, 439
NheI GCTAGC 1 cut(s) 677
NlaIII CATG 4 cut(s) 285, 562, 622, 642
NlaIV GGNNCC 3 cut(s) 99, 226, 441
NspI RCATGY 1 cut(s) 622
PaeI GCATGC 1 cut(s) 622
PfeI GAWTC 1 cut(s) 601
PkrI GCNGC 1 cut(s) 253
PspFI CCCAGC 1 cut(s) 528
PspN4I GGNNCC 3 cut(s) 99, 226, 441
PspPI GGNCC 1 cut(s) 272
PsuI RGATCY 1 cut(s) 439
RsaI GTAC 5 cut(s) 226, 280, 397, 458, 521
RsaNI GTAC 5 cut(s) 225, 279, 396, 457, 520
SaqAI TTAA 3 cut(s) 149, 320, 333
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 5 cut(s) 286, 349, 378, 427, 439
Sau96I GGNCC 1 cut(s) 272
ScaI AGTACT 1 cut(s) 397
SetI ASST 7 cut(s) 230, 243, 320, 630, 652, 679, 683
SinI GGWCC 1 cut(s) 272
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
SphI GCATGC 1 cut(s) 622
Sse9I AATT 9 cut(s) 82, 112, 145, 260, 330, 374, 431, 450, 607
SsiI CCGC 3 cut(s) 107, 126, 327
SspMI CTAG 1 cut(s) 678
TaaI ACNGT 1 cut(s) 362
TaqI TCGA 4 cut(s) 75, 168, 540, 594
TasI AATT 9 cut(s) 82, 112, 145, 260, 330, 374, 431, 450, 607
TatI WGTACW 2 cut(s) 278, 395
TfiI GAWTC 1 cut(s) 601
Tru1I TTAA 3 cut(s) 149, 320, 333
Tru9I TTAA 3 cut(s) 149, 320, 333
TseI GCWGC 1 cut(s) 251
TspDTI ATGAA 1 cut(s) 150
Vha464I CTTAAG 1 cut(s) 319
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 3 cut(s) 112, 145, 260
XceI RCATGY 1 cut(s) 622
XspI CTAG 1 cut(s) 678
ZrmI AGTACT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.